Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
04:00:53 (3771788): wrapper (7.7.26015): starting
04:00:53 (3771788): wrapper: running run_atlas (--nthreads 4)
[2026-01-13 04:00:53] Arguments: --nthreads 4
[2026-01-13 04:00:53] Threads: 4
[2026-01-13 04:00:53] Checking for CVMFS
[2026-01-13 04:00:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 04:00:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 04:00:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 04:00:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 04:00:53] 2.13.3.0 3346151 5814 51464 155072 3 57 33060304 33554433 0 130560 0 2703814 99.988 197613 219 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-01-13 04:00:53] CVMFS is ok
[2026-01-13 04:00:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 04:00:53] Checking for apptainer binary...
[2026-01-13 04:00:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 04:00:53] Running /usr/bin/apptainer --version
[2026-01-13 04:00:53] apptainer version 1.4.4
[2026-01-13 04:00:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 04:00:53] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-01-13 04:00:53] apptainer works
[2026-01-13 04:00:53] Set ATHENA_PROC_NUMBER=4
[2026-01-13 04:00:53] Set ATHENA_CORE_NUMBER=4
[2026-01-13 04:00:53] Starting ATLAS job with PandaID=6966967064
[2026-01-13 04:00:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 05:01:20]  *** The last 200 lines of the pilot log: ***
[2026-01-13 05:01:20]  is_tar=False
[2026-01-13 05:01:20]  lfn=log.48188640._000017.job.log.tgz.1
[2026-01-13 05:01:20]  mtime=0
[2026-01-13 05:01:20]  protocol_id=None
[2026-01-13 05:01:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-13 05:01:20]  replicas=None
[2026-01-13 05:01:20]  scope=mc23_13p6TeV
[2026-01-13 05:01:20]  status=None
[2026-01-13 05:01:20]  status_code=0
[2026-01-13 05:01:20]  storage_token=
[2026-01-13 05:01:20]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6966967064/log.48188640._000017.job.log.tgz.1
[2026-01-13 05:01:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2a/69/log.48188640._000017.job.log.tgz.1
[2026-01-13 05:01:20]  workdir=None
[2026-01-13 05:01:20] ]
[2026-01-13 05:01:20] 2026-01-13 03:00:44,335 | INFO     | transferring file log.48188640._000017.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6966967064/log.48188640._000017.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-01-13 05:01:20] 2026-01-13 03:00:44,335 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6966967064/log.48188640._000017.job.log.tgz.1 /home/ek/BOINC/slots/1/log.48188640._000017.job
[2026-01-13 05:01:20] 2026-01-13 03:00:44,343 | INFO     | adding to output.list: log.48188640._000017.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2a/69/log.48188640._000017.job.log.tg
[2026-01-13 05:01:20] 2026-01-13 03:00:44,344 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-13 05:01:20] 2026-01-13 03:00:44,344 | INFO     | summary of transferred files:
[2026-01-13 05:01:20] 2026-01-13 03:00:44,344 | INFO     |  -- lfn=log.48188640._000017.job.log.tgz.1, status_code=0, status=transferred
[2026-01-13 05:01:20] 2026-01-13 03:00:44,344 | INFO     | stage-out finished correctly
[2026-01-13 05:01:20] 2026-01-13 03:00:44,447 | INFO     | monitor loop #274: job 0:6966967064 is in state 'finished'
[2026-01-13 05:01:20] 2026-01-13 03:00:44,447 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 05:01:20] 2026-01-13 03:00:45,472 | INFO     | time since job start (3586s) is within the limit (349056.0s)
[2026-01-13 05:01:20] 2026-01-13 03:00:45,488 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-13 05:01:20] 2026-01-13 03:00:46,164 | INFO     | job 6966967064 has state=finished
[2026-01-13 05:01:20] 2026-01-13 03:00:46,164 | INFO     | preparing for final server update for job 6966967064 in state='finished'
[2026-01-13 05:01:20] 2026-01-13 03:00:46,164 | INFO     | this job has now completed (state=finished)
[2026-01-13 05:01:20] 2026-01-13 03:00:46,164 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-13 05:01:20] 2026-01-13 03:00:46,164 | INFO     | log transfer has been attempted: DONE
[2026-01-13 05:01:20] 2026-01-13 03:00:46,164 | INFO     | job 6966967064 has finished - writing final server update
[2026-01-13 05:01:20] 2026-01-13 03:00:46,164 | INFO     | total number of processed events: 400 (read)
[2026-01-13 05:01:20] 2026-01-13 03:00:46,165 | INFO     | executing command: lscpu
[2026-01-13 05:01:20] 2026-01-13 03:00:46,179 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-13 05:01:20] 2026-01-13 03:00:46,950 | INFO     | monitor loop #275: job 0:6966967064 is in state 'finished'
[2026-01-13 05:01:20] 2026-01-13 03:00:46,950 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 05:01:20] 2026-01-13 03:00:47,478 | INFO     | time since job start (3588s) is within the limit (349056.0s)
[2026-01-13 05:01:20] 2026-01-13 03:00:49,077 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-13 05:01:20] 2026-01-13 03:00:49,079 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 4160.2865
[2026-01-13 05:01:20] 2026-01-13 03:00:49,081 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6966967064/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 05:01:20] 2026-01-13 03:00:49,082 | INFO     | extracted standard info from prmon json
[2026-01-13 05:01:20] 2026-01-13 03:00:49,082 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 05:01:20] 2026-01-13 03:00:49,082 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 05:01:20] 2026-01-13 03:00:49,082 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 05:01:20] 2026-01-13 03:00:49,082 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | fitting pss+swap vs Time
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | sum of square deviations: 43584073.0
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | sum of deviations: -4899515882.5
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | mean x: 1768271537.5
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | mean y: 2467637.326923077
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | intersect: 198783212212.39096
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | chi2: 0.10861714402393356
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | current memory leak: -112.42 B/s (using 52 data points, chi2=0.11)
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | could have reported an average CPU frequency of 4087 MHz (5 samples)
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | ..............................
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | . Timing measurements:
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | . get job = 0 s
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | . initial setup = 1 s
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | . payload setup = 2 s
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | . stage-in = 0 s
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | . payload execution = 3566 s
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | . stage-out = 0 s
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | . log creation = 0 s
[2026-01-13 05:01:20] 2026-01-13 03:00:49,083 | INFO     | ..............................
[2026-01-13 05:01:20] 2026-01-13 03:00:49,114 | INFO     | 
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | job summary report
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | --------------------------------------------------
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | PanDA job id: 6966967064
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | task id: 48188640
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | errors: (none)
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | pilot state: finished 
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | transexitcode: 0
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | exeerrorcode: 0
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | exeerrordiag: 
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | exitcode: 0
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | exitmsg: OK
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | cpuconsumptiontime: 13578 s
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | nevents: 400
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | neventsw: 0
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | pid: 3798391
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | pgrp: 3798391
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | corecount: 4
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | event service: False
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | sizes: {0: 2284136, 2: 2284398, 11: 2284426, 3572: 2310273, 3573: 2319271, 3574: 2319327, 3577: 2319681}
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | --------------------------------------------------
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | 
[2026-01-13 05:01:20] 2026-01-13 03:00:49,115 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 05:01:20] 2026-01-13 03:00:49,125 | INFO     | job 6966967064 has completed (purged errors)
[2026-01-13 05:01:20] 2026-01-13 03:00:49,126 | INFO     | overall cleanup function is called
[2026-01-13 05:01:20] 2026-01-13 03:00:50,132 | INFO     | --- collectZombieJob: --- 10, [3798391]
[2026-01-13 05:01:20] 2026-01-13 03:00:50,132 | INFO     | zombie collector waiting for pid 3798391
[2026-01-13 05:01:20] 2026-01-13 03:00:50,132 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 05:01:20] 2026-01-13 03:00:50,132 | INFO     | collected zombie processes
[2026-01-13 05:01:20] 2026-01-13 03:00:50,132 | INFO     | will attempt to kill all subprocesses of pid=3798391
[2026-01-13 05:01:20] 2026-01-13 03:00:50,235 | INFO     | process IDs to be killed: [3798391] (in reverse order)
[2026-01-13 05:01:20] 2026-01-13 03:00:50,267 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 05:01:20] 2026-01-13 03:00:50,267 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 05:01:20] 2026-01-13 03:00:50,270 | INFO     | did not find any defunct processes belonging to 3798391
[2026-01-13 05:01:20] 2026-01-13 03:00:50,272 | INFO     | did not find any defunct processes belonging to 3798391
[2026-01-13 05:01:20] 2026-01-13 03:00:50,272 | INFO     | ready for new job
[2026-01-13 05:01:20] 2026-01-13 03:00:50,272 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 05:01:20] 2026-01-13 03:00:50,273 | INFO     | ***************************************
[2026-01-13 05:01:20] 2026-01-13 03:00:50,273 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 05:01:20] 2026-01-13 03:00:50,273 | INFO     | ***************************************
[2026-01-13 05:01:20] 2026-01-13 03:00:50,273 | INFO     | 
[2026-01-13 05:01:20] 2026-01-13 03:00:50,274 | INFO     | architecture information:
[2026-01-13 05:01:20] 2026-01-13 03:00:50,274 | INFO     | executing command: cat /etc/os-release
[2026-01-13 05:01:20] 2026-01-13 03:00:50,279 | INFO     | cat /etc/os-release:
[2026-01-13 05:01:20] NAME="CentOS Linux"
[2026-01-13 05:01:20] VERSION="7 (Core)"
[2026-01-13 05:01:20] ID="centos"
[2026-01-13 05:01:20] ID_LIKE="rhel fedora"
[2026-01-13 05:01:20] VERSION_ID="7"
[2026-01-13 05:01:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 05:01:20] ANSI_COLOR="0;31"
[2026-01-13 05:01:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 05:01:20] HOME_URL="https://www.centos.org/"
[2026-01-13 05:01:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 05:01:20] 
[2026-01-13 05:01:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 05:01:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 05:01:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 05:01:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 05:01:20] 
[2026-01-13 05:01:20] 2026-01-13 03:00:50,279 | INFO     | ***************************************
[2026-01-13 05:01:20] 2026-01-13 03:00:50,782 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-01-13 05:01:20] 2026-01-13 03:00:50,788 | INFO     | sufficient remaining disk space (48311042048 B)
[2026-01-13 05:01:20] 2026-01-13 03:00:50,788 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 05:01:20] 2026-01-13 03:00:50,788 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 05:01:20] 2026-01-13 03:00:50,788 | INFO     | update_server=False
[2026-01-13 05:01:20] 2026-01-13 03:00:50,788 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 05:01:20] 2026-01-13 03:00:50,788 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 05:01:20] 2026-01-13 03:00:50,789 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 05:01:20] 2026-01-13 03:00:50,789 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 05:01:20] 2026-01-13 03:00:50,789 | INFO     | aborting loop
[2026-01-13 05:01:20] 2026-01-13 03:00:51,523 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 05:01:20] 2026-01-13 03:00:51,581 | INFO     | all data control threads have been joined
[2026-01-13 05:01:20] 2026-01-13 03:00:51,793 | INFO     | [job] retrieve thread has finished
[2026-01-13 05:01:20] 2026-01-13 03:00:51,794 | INFO     | [job] queue monitor thread has finished
[2026-01-13 05:01:20] 2026-01-13 03:00:51,794 | INFO     | [job] job monitor thread has finished
[2026-01-13 05:01:20] 2026-01-13 03:00:51,833 | INFO     | all payload control threads have been joined
[2026-01-13 05:01:20] 2026-01-13 03:00:51,983 | INFO     | [data] copytool_in thread has finished
[2026-01-13 05:01:20] 2026-01-13 03:00:52,174 | INFO     | [payload] failed_post thread has finished
[2026-01-13 05:01:20] 2026-01-13 03:00:52,251 | INFO     | all job control threads have been joined
[2026-01-13 05:01:20] 2026-01-13 03:00:52,578 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 05:01:20] 2026-01-13 03:00:52,587 | INFO     | [data] control thread has finished
[2026-01-13 05:01:20] 2026-01-13 03:00:52,794 | INFO     | [data] copytool_out thread has finished
[2026-01-13 05:01:20] 2026-01-13 03:00:52,838 | INFO     | [payload] control thread has finished
[2026-01-13 05:01:20] 2026-01-13 03:00:52,891 | INFO     | [job] validate thread has finished
[2026-01-13 05:01:20] 2026-01-13 03:00:52,966 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 05:01:20] 2026-01-13 03:00:53,051 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 05:01:20] 2026-01-13 03:00:53,108 | INFO     | [payload] validate_post thread has finished
[2026-01-13 05:01:20] 2026-01-13 03:00:53,256 | INFO     | [job] control thread has finished
[2026-01-13 05:01:20] 2026-01-13 03:00:55,528 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 05:01:20] 2026-01-13 03:00:57,065 [wrapper] supervise_pilot (15 min periods counter: 5)
[2026-01-13 05:01:20] 2026-01-13 03:01:01,816 | INFO     | job.realtimelogging is not enabled
[2026-01-13 05:01:20] 2026-01-13 03:01:02,821 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 05:01:20] 2026-01-13 03:01:04,783 | INFO     | [monitor] cgroup control has ended
[2026-01-13 05:01:20] 2026-01-13 03:01:05,788 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140253218678592)>', '<ExcThread(monitor, started 140252719064832)>']
[2026-01-13 05:01:20] 2026-01-13 03:01:10,813 | INFO     | all workflow threads have been joined
[2026-01-13 05:01:20] 2026-01-13 03:01:10,813 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 05:01:20] 2026-01-13 03:01:10,813 | INFO     | traces error code: 0
[2026-01-13 05:01:20] 2026-01-13 03:01:10,813 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 05:01:20] 2026-01-13 03:01:20,640 | INFO     | PID=3778905 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 05:01:20] 2026-01-13 03:01:20,640 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 05:01:20] 2026-01-13 03:01:20,640 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 05:01:20] 2026-01-13 03:01:20,640 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 05:01:20] 2026-01-13 03:01:20,640 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 05:01:20] 2026-01-13 03:01:20,640 | INFO     | [monitor] control thread has ended
[2026-01-13 05:01:20] 2026-01-13 03:01:20,686 [wrapper] ==== pilot stdout END ====
[2026-01-13 05:01:20] 2026-01-13 03:01:20,687 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 05:01:20] 2026-01-13 03:01:20,688 [wrapper] pilotpid: 3778905
[2026-01-13 05:01:20] 2026-01-13 03:01:20,690 [wrapper] Pilot exit status: 0
[2026-01-13 05:01:20] 2026-01-13 03:01:20,695 [wrapper] pandaids: 6966967064
[2026-01-13 05:01:20] 2026-01-13 03:01:20,716 [wrapper] cleanup supervisor_pilot 3019229 3778906
[2026-01-13 05:01:20] 2026-01-13 03:01:20,718 [wrapper] Test setup, not cleaning
[2026-01-13 05:01:20] 2026-01-13 03:01:20,719 [wrapper] apfmon messages muted
[2026-01-13 05:01:20] 2026-01-13 03:01:20,720 [wrapper] ==== wrapper stdout END ====
[2026-01-13 05:01:20] 2026-01-13 03:01:20,722 [wrapper] ==== wrapper stderr END ====
[2026-01-13 05:01:20]  *** Error codes and diagnostics ***
[2026-01-13 05:01:20]     "exeErrorCode": 0,
[2026-01-13 05:01:20]     "exeErrorDiag": "",
[2026-01-13 05:01:20]     "pilotErrorCode": 0,
[2026-01-13 05:01:20]     "pilotErrorDiag": "",
[2026-01-13 05:01:20]  *** Listing of results directory ***
[2026-01-13 05:01:20] total 492120
[2026-01-13 05:01:20] -rw-r--r-- 1 ek ek    579449 Jan 12 14:21 pilot3.tar.gz
[2026-01-13 05:01:20] -rwx------ 1 ek ek     36322 Jan 12 14:26 runpilot2-wrapper.sh
[2026-01-13 05:01:20] -rw-r--r-- 1 ek ek      5112 Jan 12 14:26 queuedata.json
[2026-01-13 05:01:20] -rw-rw-r-- 1 ek ek       100 Jan 13 04:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 05:01:20] -rwxr-xr-x 1 ek ek      7986 Jan 13 04:00 run_atlas
[2026-01-13 05:01:20] -rw-rw-r-- 1 ek ek       105 Jan 13 04:00 job.xml
[2026-01-13 05:01:20] -rw-r--r-- 2 ek ek 294685259 Jan 13 04:00 EVNT.48188638._000001.pool.root.1
[2026-01-13 05:01:20] drwxrwx--x 2 ek ek      4096 Jan 13 04:00 shared
[2026-01-13 05:01:20] -rw-r--r-- 2 ek ek    592423 Jan 13 04:00 input.tar.gz
[2026-01-13 05:01:20] -rw-r--r-- 2 ek ek     15847 Jan 13 04:00 start_atlas.sh
[2026-01-13 05:01:20] -rw-rw-r-- 1 ek ek         0 Jan 13 04:00 boinc_setup_complete
[2026-01-13 05:01:20] -rw-rw-r-- 1 ek ek      9841 Jan 13 04:00 init_data.xml
[2026-01-13 05:01:20] -rw-rw-r-- 1 ek ek         0 Jan 13 04:00 boinc_lockfile
[2026-01-13 05:01:20] -rw-rw-r-- 1 ek ek      2647 Jan 13 04:00 pandaJob.out
[2026-01-13 05:01:20] -rw------- 1 ek ek        50 Jan 13 04:00 setup.sh.local
[2026-01-13 05:01:20] -rw------- 1 ek ek    987763 Jan 13 04:00 agis_schedconf.cvmfs.json
[2026-01-13 05:01:20] -rw------- 1 ek ek   1516240 Jan 13 04:00 agis_ddmendpoints.agis.ALL.json
[2026-01-13 05:01:20] drwx------ 5 ek ek      4096 Jan 13 04:00 pilot3
[2026-01-13 05:01:20] -rw------- 1 ek ek 203687818 Jan 13 05:00 HITS.48188640._000017.pool.root.1
[2026-01-13 05:01:20] -rw------- 1 ek ek        95 Jan 13 05:00 pilot_heartbeat.json
[2026-01-13 05:01:20] -rw------- 1 ek ek      1035 Jan 13 05:00 memory_monitor_summary.json
[2026-01-13 05:01:20] -rw------- 1 ek ek    278534 Jan 13 05:00 log.48188640._000017.job.log.tgz.1
[2026-01-13 05:01:20] -rw-rw-r-- 1 ek ek       529 Jan 13 05:00 boinc_task_state.xml
[2026-01-13 05:01:20] -rw------- 1 ek ek      7777 Jan 13 05:00 heartbeat.json
[2026-01-13 05:01:20] -rw-rw-r-- 1 ek ek      8192 Jan 13 05:01 boinc_mmap_file
[2026-01-13 05:01:20] -rw-rw-r-- 1 ek ek        27 Jan 13 05:01 wrapper_checkpoint.txt
[2026-01-13 05:01:20] -rw------- 1 ek ek       747 Jan 13 05:01 pilotlog.txt
[2026-01-13 05:01:20] -rw------- 1 ek ek    539881 Jan 13 05:01 log.48188640._000017.job.log.1
[2026-01-13 05:01:20] -rw------- 1 ek ek       357 Jan 13 05:01 output.list
[2026-01-13 05:01:20] -rw-rw-r-- 1 ek ek       620 Jan 13 05:01 runtime_log
[2026-01-13 05:01:20] -rw------- 1 ek ek    839680 Jan 13 05:01 result.tar.gz
[2026-01-13 05:01:20] -rw-rw-r-- 1 ek ek      9502 Jan 13 05:01 runtime_log.err
[2026-01-13 05:01:20] -rw------- 1 ek ek       664 Jan 13 05:01 3hGNDmsAWz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmabnKDm5bdSCn.diag
[2026-01-13 05:01:20] -rw-rw-r-- 1 ek ek     21404 Jan 13 05:01 stderr.txt
[2026-01-13 05:01:20] HITS file was successfully produced:
[2026-01-13 05:01:20] -rw------- 1 ek ek 203687818 Jan 13 05:00 shared/HITS.pool.root.1
[2026-01-13 05:01:20]  *** Contents of shared directory: ***
[2026-01-13 05:01:20] total 488120
[2026-01-13 05:01:20] -rw-r--r-- 2 ek ek 294685259 Jan 13 04:00 ATLAS.root_0
[2026-01-13 05:01:20] -rw-r--r-- 2 ek ek    592423 Jan 13 04:00 input.tar.gz
[2026-01-13 05:01:20] -rw-r--r-- 2 ek ek     15847 Jan 13 04:00 start_atlas.sh
[2026-01-13 05:01:20] -rw------- 1 ek ek 203687818 Jan 13 05:00 HITS.pool.root.1
[2026-01-13 05:01:20] -rw------- 1 ek ek    839680 Jan 13 05:01 result.tar.gz
05:01:22 (3771788): run_atlas exited; CPU time 13612.477563
05:01:22 (3771788): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN