Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
06:01:46 (2288820): wrapper (7.7.26015): starting
06:01:46 (2288820): wrapper: running run_atlas (--nthreads 4)
[2026-01-13 06:01:46] Arguments: --nthreads 4
[2026-01-13 06:01:46] Threads: 4
[2026-01-13 06:01:46] Checking for CVMFS
[2026-01-13 06:01:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 06:01:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 06:01:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 06:01:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 06:01:47] 2.13.3.0 3346151 5934 51968 155075 2 57 33080365 33554432 0 130560 0 2824652 99.988 201708 219 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-01-13 06:01:47] CVMFS is ok
[2026-01-13 06:01:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 06:01:47] Checking for apptainer binary...
[2026-01-13 06:01:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 06:01:47] Running /usr/bin/apptainer --version
[2026-01-13 06:01:47] apptainer version 1.4.4
[2026-01-13 06:01:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 06:01:47] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-01-13 06:01:47] apptainer works
[2026-01-13 06:01:47] Set ATHENA_PROC_NUMBER=4
[2026-01-13 06:01:47] Set ATHENA_CORE_NUMBER=4
[2026-01-13 06:01:47] Starting ATLAS job with PandaID=6966967296
[2026-01-13 06:01:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 07:04:04]  *** The last 200 lines of the pilot log: ***
[2026-01-13 07:04:04]  status=None
[2026-01-13 07:04:04]  status_code=0
[2026-01-13 07:04:04]  storage_token=
[2026-01-13 07:04:04]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6966967296/log.48188640._000249.job.log.tgz.1
[2026-01-13 07:04:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5e/b0/log.48188640._000249.job.log.tgz.1
[2026-01-13 07:04:04]  workdir=None
[2026-01-13 07:04:04] ]
[2026-01-13 07:04:04] 2026-01-13 05:03:11,073 | INFO     | transferring file log.48188640._000249.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6966967296/log.48188640._000249.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-01-13 07:04:04] 2026-01-13 05:03:11,073 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6966967296/log.48188640._000249.job.log.tgz.1 /home/ek/BOINC/slots/1/log.48188640._000249.job
[2026-01-13 07:04:04] 2026-01-13 05:03:11,082 | INFO     | adding to output.list: log.48188640._000249.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5e/b0/log.48188640._000249.job.log.tg
[2026-01-13 07:04:04] 2026-01-13 05:03:11,083 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-13 07:04:04] 2026-01-13 05:03:11,083 | INFO     | summary of transferred files:
[2026-01-13 07:04:04] 2026-01-13 05:03:11,083 | INFO     |  -- lfn=log.48188640._000249.job.log.tgz.1, status_code=0, status=transferred
[2026-01-13 07:04:04] 2026-01-13 05:03:11,083 | INFO     | stage-out finished correctly
[2026-01-13 07:04:04] 2026-01-13 05:03:11,307 | INFO     | time since job start (3678s) is within the limit (349056.0s)
[2026-01-13 07:04:04] 2026-01-13 05:03:13,312 | INFO     | time since job start (3680s) is within the limit (349056.0s)
[2026-01-13 07:04:04] 2026-01-13 05:03:13,869 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-13 07:04:04] 2026-01-13 05:03:13,974 | WARNING  | process 2317996 can no longer be monitored (due to stat problems) - aborting
[2026-01-13 07:04:04] 2026-01-13 05:03:13,975 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6966967296/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 07:04:04] 2026-01-13 05:03:13,975 | INFO     | reaping zombies for max 20 seconds
[2026-01-13 07:04:04] 2026-01-13 05:03:13,984 | INFO     | checking for looping job (in state=finished)
[2026-01-13 07:04:04] 2026-01-13 05:03:13,984 | INFO     | using looping job limit: 7200 s
[2026-01-13 07:04:04] 2026-01-13 05:03:14,088 | INFO     | number of running child processes to parent process 2317996: 1
[2026-01-13 07:04:04] 2026-01-13 05:03:14,089 | INFO     | maximum number of monitored processes: 6
[2026-01-13 07:04:04] 2026-01-13 05:03:14,421 | INFO     | PID=2296142 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 07:04:04] 2026-01-13 05:03:15,421 | INFO     | time since job start (3682s) is within the limit (349056.0s)
[2026-01-13 07:04:04] 2026-01-13 05:03:16,087 | INFO     | job 6966967296 has state=finished
[2026-01-13 07:04:04] 2026-01-13 05:03:16,087 | INFO     | preparing for final server update for job 6966967296 in state='finished'
[2026-01-13 07:04:04] 2026-01-13 05:03:16,592 | INFO     | monitor loop #280: job 0:6966967296 is in state 'finished'
[2026-01-13 07:04:04] 2026-01-13 05:03:16,592 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 07:04:04] 2026-01-13 05:03:16,963 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-13 07:04:04] 2026-01-13 05:03:16,963 | INFO     | this job has now completed (state=finished)
[2026-01-13 07:04:04] 2026-01-13 05:03:16,963 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-13 07:04:04] 2026-01-13 05:03:16,963 | INFO     | log transfer has been attempted: DONE
[2026-01-13 07:04:04] 2026-01-13 05:03:16,963 | INFO     | job 6966967296 has finished - writing final server update
[2026-01-13 07:04:04] 2026-01-13 05:03:16,963 | INFO     | total number of processed events: 400 (read)
[2026-01-13 07:04:04] 2026-01-13 05:03:16,963 | INFO     | executing command: lscpu
[2026-01-13 07:04:04] 2026-01-13 05:03:16,976 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-13 07:04:04] 2026-01-13 05:03:17,426 | INFO     | time since job start (3684s) is within the limit (349056.0s)
[2026-01-13 07:04:04] 2026-01-13 05:03:18,752 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-13 07:04:04] 2026-01-13 05:03:18,754 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 4157.3355
[2026-01-13 07:04:04] 2026-01-13 05:03:18,756 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6966967296/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 07:04:04] 2026-01-13 05:03:18,756 | INFO     | extracted standard info from prmon json
[2026-01-13 07:04:04] 2026-01-13 05:03:18,756 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 07:04:04] 2026-01-13 05:03:18,756 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 07:04:04] 2026-01-13 05:03:18,757 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 07:04:04] 2026-01-13 05:03:18,757 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 07:04:04] 2026-01-13 05:03:18,758 | INFO     | fitting pss+swap vs Time
[2026-01-13 07:04:04] 2026-01-13 05:03:18,758 | INFO     | sum of square deviations: 46147842.0
[2026-01-13 07:04:04] 2026-01-13 05:03:18,758 | INFO     | sum of deviations: -2635104962.0
[2026-01-13 07:04:04] 2026-01-13 05:03:18,758 | INFO     | mean x: 1768278822.0
[2026-01-13 07:04:04] 2026-01-13 05:03:18,758 | INFO     | mean y: 2388070.1886792453
[2026-01-13 07:04:04] 2026-01-13 05:03:18,758 | INFO     | intersect: 100973529863.81177
[2026-01-13 07:04:04] 2026-01-13 05:03:18,758 | INFO     | chi2: 0.08896118648015965
[2026-01-13 07:04:04] 2026-01-13 05:03:18,758 | INFO     | current memory leak: -57.10 B/s (using 53 data points, chi2=0.09)
[2026-01-13 07:04:04] 2026-01-13 05:03:18,758 | INFO     | could have reported an average CPU frequency of 4172 MHz (6 samples)
[2026-01-13 07:04:04] 2026-01-13 05:03:18,758 | INFO     | ..............................
[2026-01-13 07:04:04] 2026-01-13 05:03:18,758 | INFO     | . Timing measurements:
[2026-01-13 07:04:04] 2026-01-13 05:03:18,758 | INFO     | . get job = 0 s
[2026-01-13 07:04:04] 2026-01-13 05:03:18,758 | INFO     | . initial setup = 1 s
[2026-01-13 07:04:04] 2026-01-13 05:03:18,758 | INFO     | . payload setup = 2 s
[2026-01-13 07:04:04] 2026-01-13 05:03:18,758 | INFO     | . stage-in = 0 s
[2026-01-13 07:04:04] 2026-01-13 05:03:18,758 | INFO     | . payload execution = 3657 s
[2026-01-13 07:04:04] 2026-01-13 05:03:18,759 | INFO     | . stage-out = 0 s
[2026-01-13 07:04:04] 2026-01-13 05:03:18,759 | INFO     | . log creation = 0 s
[2026-01-13 07:04:04] 2026-01-13 05:03:18,759 | INFO     | ..............................
[2026-01-13 07:04:04] 2026-01-13 05:03:18,944 | INFO     | 
[2026-01-13 07:04:04] 2026-01-13 05:03:18,944 | INFO     | job summary report
[2026-01-13 07:04:04] 2026-01-13 05:03:18,944 | INFO     | --------------------------------------------------
[2026-01-13 07:04:04] 2026-01-13 05:03:18,944 | INFO     | PanDA job id: 6966967296
[2026-01-13 07:04:04] 2026-01-13 05:03:18,944 | INFO     | task id: 48188640
[2026-01-13 07:04:04] 2026-01-13 05:03:18,944 | INFO     | errors: (none)
[2026-01-13 07:04:04] 2026-01-13 05:03:18,944 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 07:04:04] 2026-01-13 05:03:18,944 | INFO     | pilot state: finished 
[2026-01-13 07:04:04] 2026-01-13 05:03:18,944 | INFO     | transexitcode: 0
[2026-01-13 07:04:04] 2026-01-13 05:03:18,944 | INFO     | exeerrorcode: 0
[2026-01-13 07:04:04] 2026-01-13 05:03:18,944 | INFO     | exeerrordiag: 
[2026-01-13 07:04:04] 2026-01-13 05:03:18,944 | INFO     | exitcode: 0
[2026-01-13 07:04:04] 2026-01-13 05:03:18,944 | INFO     | exitmsg: OK
[2026-01-13 07:04:04] 2026-01-13 05:03:18,944 | INFO     | cpuconsumptiontime: 13929 s
[2026-01-13 07:04:04] 2026-01-13 05:03:18,944 | INFO     | nevents: 400
[2026-01-13 07:04:04] 2026-01-13 05:03:18,944 | INFO     | neventsw: 0
[2026-01-13 07:04:04] 2026-01-13 05:03:18,945 | INFO     | pid: 2317996
[2026-01-13 07:04:04] 2026-01-13 05:03:18,945 | INFO     | pgrp: 2317996
[2026-01-13 07:04:04] 2026-01-13 05:03:18,945 | INFO     | corecount: 4
[2026-01-13 07:04:04] 2026-01-13 05:03:18,945 | INFO     | event service: False
[2026-01-13 07:04:04] 2026-01-13 05:03:18,945 | INFO     | sizes: {0: 2283314, 1: 2284056, 3: 2284432, 11: 2284460, 3664: 2310402, 3665: 2319400, 3668: 2319584, 3673: 2319778}
[2026-01-13 07:04:04] 2026-01-13 05:03:18,945 | INFO     | --------------------------------------------------
[2026-01-13 07:04:04] 2026-01-13 05:03:18,945 | INFO     | 
[2026-01-13 07:04:04] 2026-01-13 05:03:18,945 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2026-01-13 07:04:04] 2026-01-13 05:03:18,954 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,954 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,954 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,954 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,954 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,954 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,954 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,955 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,955 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,955 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,955 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,955 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,955 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,955 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,955 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,955 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,955 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,955 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 07:04:04] 2026-01-13 05:03:18,955 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,955 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 07:04:04] 2026-01-13 05:03:18,955 | INFO     | job 6966967296 has completed (purged errors)
[2026-01-13 07:04:04] 2026-01-13 05:03:18,955 | INFO     | overall cleanup function is called
[2026-01-13 07:04:04] 2026-01-13 05:03:19,961 | INFO     | --- collectZombieJob: --- 10, [2317996]
[2026-01-13 07:04:04] 2026-01-13 05:03:19,962 | INFO     | zombie collector waiting for pid 2317996
[2026-01-13 07:04:04] 2026-01-13 05:03:19,962 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 07:04:04] 2026-01-13 05:03:19,962 | INFO     | collected zombie processes
[2026-01-13 07:04:04] 2026-01-13 05:03:19,962 | INFO     | will attempt to kill all subprocesses of pid=2317996
[2026-01-13 07:04:04] 2026-01-13 05:03:20,065 | INFO     | process IDs to be killed: [2317996] (in reverse order)
[2026-01-13 07:04:04] 2026-01-13 05:03:20,098 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 07:04:04] 2026-01-13 05:03:20,099 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 07:04:04] 2026-01-13 05:03:20,102 | INFO     | did not find any defunct processes belonging to 2317996
[2026-01-13 07:04:04] 2026-01-13 05:03:20,105 | INFO     | did not find any defunct processes belonging to 2317996
[2026-01-13 07:04:04] 2026-01-13 05:03:20,105 | INFO     | ready for new job
[2026-01-13 07:04:04] 2026-01-13 05:03:20,105 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 07:04:04] 2026-01-13 05:03:20,105 | INFO     | ***************************************
[2026-01-13 07:04:04] 2026-01-13 05:03:20,105 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 07:04:04] 2026-01-13 05:03:20,105 | INFO     | ***************************************
[2026-01-13 07:04:04] 2026-01-13 05:03:20,105 | INFO     | 
[2026-01-13 07:04:04] 2026-01-13 05:03:20,106 | INFO     | architecture information:
[2026-01-13 07:04:04] 2026-01-13 05:03:20,106 | INFO     | executing command: cat /etc/os-release
[2026-01-13 07:04:04] 2026-01-13 05:03:20,114 | INFO     | cat /etc/os-release:
[2026-01-13 07:04:04] NAME="CentOS Linux"
[2026-01-13 07:04:04] VERSION="7 (Core)"
[2026-01-13 07:04:04] ID="centos"
[2026-01-13 07:04:04] ID_LIKE="rhel fedora"
[2026-01-13 07:04:04] VERSION_ID="7"
[2026-01-13 07:04:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 07:04:04] ANSI_COLOR="0;31"
[2026-01-13 07:04:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 07:04:04] HOME_URL="https://www.centos.org/"
[2026-01-13 07:04:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 07:04:04] 
[2026-01-13 07:04:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 07:04:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 07:04:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 07:04:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 07:04:04] 
[2026-01-13 07:04:04] 2026-01-13 05:03:20,114 | INFO     | ***************************************
[2026-01-13 07:04:04] 2026-01-13 05:03:20,617 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-01-13 07:04:04] 2026-01-13 05:03:20,625 | INFO     | sufficient remaining disk space (48216670208 B)
[2026-01-13 07:04:04] 2026-01-13 05:03:20,625 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 07:04:04] 2026-01-13 05:03:20,625 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 07:04:04] 2026-01-13 05:03:20,625 | INFO     | update_server=False
[2026-01-13 07:04:04] 2026-01-13 05:03:20,625 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 07:04:04] 2026-01-13 05:03:20,625 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 07:04:04] 2026-01-13 05:03:20,626 | INFO     | aborting loop
[2026-01-13 07:04:04] 2026-01-13 05:03:20,626 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 07:04:04] 2026-01-13 05:03:20,626 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 07:04:04] 2026-01-13 05:03:20,881 | INFO     | all data control threads have been joined
[2026-01-13 07:04:04] 2026-01-13 05:03:21,175 | INFO     | all payload control threads have been joined
[2026-01-13 07:04:04] 2026-01-13 05:03:21,624 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 07:04:04] 2026-01-13 05:03:21,631 | INFO     | [job] retrieve thread has finished
[2026-01-13 07:04:04] 2026-01-13 05:03:21,631 | INFO     | [job] queue monitor thread has finished
[2026-01-13 07:04:04] 2026-01-13 05:03:21,631 | INFO     | [job] job monitor thread has finished
[2026-01-13 07:04:04] 2026-01-13 05:03:21,886 | INFO     | [data] control thread has finished
[2026-01-13 07:04:04] 2026-01-13 05:03:21,969 | INFO     | [payload] validate_post thread has finished
[2026-01-13 07:04:04] 2026-01-13 05:03:22,021 | INFO     | [data] copytool_in thread has finished
[2026-01-13 07:04:04] 2026-01-13 05:03:22,181 | INFO     | [payload] control thread has finished
[2026-01-13 07:04:04] 2026-01-13 05:03:22,276 | INFO     | all job control threads have been joined
[2026-01-13 07:04:04] 2026-01-13 05:03:22,653 | INFO     | [payload] failed_post thread has finished
[2026-01-13 07:04:04] 2026-01-13 05:03:22,743 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 07:04:04] 2026-01-13 05:03:22,748 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 07:04:04] 2026-01-13 05:03:23,078 | INFO     | [job] validate thread has finished
[2026-01-13 07:04:04] 2026-01-13 05:03:23,079 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 07:04:04] 2026-01-13 05:03:23,079 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 07:04:04] 2026-01-13 05:03:23,281 | INFO     | [job] control thread has finished
[2026-01-13 07:04:04] 2026-01-13 05:03:23,630 | INFO     | [data] copytool_out thread has finished
[2026-01-13 07:04:04] 2026-01-13 05:03:24,631 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 07:04:04] 2026-01-13 05:03:50,599 | INFO     | PID=2296142 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 07:04:04] 2026-01-13 05:03:50,599 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 07:04:04] 2026-01-13 05:03:50,599 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 07:04:04] 2026-01-13 05:03:50,599 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 07:04:04] 2026-01-13 05:03:58,652 | INFO     | [monitor] cgroup control has ended
[2026-01-13 07:04:04] 2026-01-13 05:03:59,765 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140097053382464)>', '<ExcThread(monitor, started 140096179263232)>']
[2026-01-13 07:04:04] 2026-01-13 05:04:00,650 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 07:04:04] 2026-01-13 05:04:00,650 | INFO     | [monitor] control thread has ended
[2026-01-13 07:04:04] 2026-01-13 05:04:04,790 | INFO     | all workflow threads have been joined
[2026-01-13 07:04:04] 2026-01-13 05:04:04,790 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 07:04:04] 2026-01-13 05:04:04,790 | INFO     | traces error code: 0
[2026-01-13 07:04:04] 2026-01-13 05:04:04,790 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 07:04:04] 2026-01-13 05:04:04,863 [wrapper] ==== pilot stdout END ====
[2026-01-13 07:04:04] 2026-01-13 05:04:04,865 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 07:04:04] 2026-01-13 05:04:04,866 [wrapper] pilotpid: 2296142
[2026-01-13 07:04:04] 2026-01-13 05:04:04,868 [wrapper] Pilot exit status: 0
[2026-01-13 07:04:04] 2026-01-13 05:04:04,874 [wrapper] pandaids: 6966967296
[2026-01-13 07:04:04] 2026-01-13 05:04:04,898 [wrapper] cleanup supervisor_pilot 1468613 2296143
[2026-01-13 07:04:04] 2026-01-13 05:04:04,900 [wrapper] Test setup, not cleaning
[2026-01-13 07:04:04] 2026-01-13 05:04:04,903 [wrapper] apfmon messages muted
[2026-01-13 07:04:04] 2026-01-13 05:04:04,905 [wrapper] ==== wrapper stdout END ====
[2026-01-13 07:04:04] 2026-01-13 05:04:04,907 [wrapper] ==== wrapper stderr END ====
[2026-01-13 07:04:04]  *** Error codes and diagnostics ***
[2026-01-13 07:04:04]     "exeErrorCode": 0,
[2026-01-13 07:04:04]     "exeErrorDiag": "",
[2026-01-13 07:04:04]     "pilotErrorCode": 0,
[2026-01-13 07:04:04]     "pilotErrorDiag": "",
[2026-01-13 07:04:04]  *** Listing of results directory ***
[2026-01-13 07:04:04] total 496544
[2026-01-13 07:04:04] -rw-r--r-- 1 ek ek    579449 Jan 12 14:21 pilot3.tar.gz
[2026-01-13 07:04:04] -rw-r--r-- 1 ek ek      5112 Jan 12 14:25 queuedata.json
[2026-01-13 07:04:04] -rwx------ 1 ek ek     36322 Jan 12 14:25 runpilot2-wrapper.sh
[2026-01-13 07:04:04] -rw-rw-r-- 1 ek ek       100 Jan 13 06:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 07:04:04] -rwxr-xr-x 1 ek ek      7986 Jan 13 06:01 run_atlas
[2026-01-13 07:04:04] -rw-rw-r-- 1 ek ek       105 Jan 13 06:01 job.xml
[2026-01-13 07:04:04] -rw-r--r-- 2 ek ek 293124801 Jan 13 06:01 EVNT.48188638._000010.pool.root.1
[2026-01-13 07:04:04] drwxrwx--x 2 ek ek      4096 Jan 13 06:01 shared
[2026-01-13 07:04:04] -rw-r--r-- 2 ek ek    592429 Jan 13 06:01 input.tar.gz
[2026-01-13 07:04:04] -rw-r--r-- 2 ek ek     15847 Jan 13 06:01 start_atlas.sh
[2026-01-13 07:04:04] -rw-rw-r-- 1 ek ek         0 Jan 13 06:01 boinc_setup_complete
[2026-01-13 07:04:04] -rw-rw-r-- 1 ek ek      9841 Jan 13 06:01 init_data.xml
[2026-01-13 07:04:04] -rw-rw-r-- 1 ek ek         0 Jan 13 06:01 boinc_lockfile
[2026-01-13 07:04:04] -rw-rw-r-- 1 ek ek      2650 Jan 13 06:01 pandaJob.out
[2026-01-13 07:04:04] -rw------- 1 ek ek        50 Jan 13 06:01 setup.sh.local
[2026-01-13 07:04:04] -rw------- 1 ek ek    987763 Jan 13 06:01 agis_schedconf.cvmfs.json
[2026-01-13 07:04:04] -rw------- 1 ek ek   1516240 Jan 13 06:01 agis_ddmendpoints.agis.ALL.json
[2026-01-13 07:04:04] drwx------ 5 ek ek      4096 Jan 13 06:01 pilot3
[2026-01-13 07:04:04] -rw------- 1 ek ek 209731536 Jan 13 07:02 HITS.48188640._000249.pool.root.1
[2026-01-13 07:04:04] -rw------- 1 ek ek      1056 Jan 13 07:03 memory_monitor_summary.json
[2026-01-13 07:04:04] -rw-rw-r-- 1 ek ek       529 Jan 13 07:03 boinc_task_state.xml
[2026-01-13 07:04:04] -rw------- 1 ek ek    290461 Jan 13 07:03 log.48188640._000249.job.log.tgz.1
[2026-01-13 07:04:04] -rw------- 1 ek ek      7818 Jan 13 07:03 heartbeat.json
[2026-01-13 07:04:04] -rw-rw-r-- 1 ek ek      8192 Jan 13 07:03 boinc_mmap_file
[2026-01-13 07:04:04] -rw-rw-r-- 1 ek ek        27 Jan 13 07:03 wrapper_checkpoint.txt
[2026-01-13 07:04:04] -rw------- 1 ek ek        95 Jan 13 07:03 pilot_heartbeat.json
[2026-01-13 07:04:04] -rw------- 1 ek ek      4748 Jan 13 07:04 pilotlog.txt
[2026-01-13 07:04:04] -rw------- 1 ek ek    553809 Jan 13 07:04 log.48188640._000249.job.log.1
[2026-01-13 07:04:04] -rw------- 1 ek ek       357 Jan 13 07:04 output.list
[2026-01-13 07:04:04] -rw-rw-r-- 1 ek ek       620 Jan 13 07:04 runtime_log
[2026-01-13 07:04:04] -rw------- 1 ek ek    860160 Jan 13 07:04 result.tar.gz
[2026-01-13 07:04:04] -rw-rw-r-- 1 ek ek      9502 Jan 13 07:04 runtime_log.err
[2026-01-13 07:04:04] -rw------- 1 ek ek       669 Jan 13 07:04 ND4NDmUAWz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJbnKDm609jDm.diag
[2026-01-13 07:04:04] -rw-rw-r-- 1 ek ek     21959 Jan 13 07:04 stderr.txt
[2026-01-13 07:04:04] HITS file was successfully produced:
[2026-01-13 07:04:04] -rw------- 1 ek ek 209731536 Jan 13 07:02 shared/HITS.pool.root.1
[2026-01-13 07:04:04]  *** Contents of shared directory: ***
[2026-01-13 07:04:04] total 492516
[2026-01-13 07:04:04] -rw-r--r-- 2 ek ek 293124801 Jan 13 06:01 ATLAS.root_0
[2026-01-13 07:04:04] -rw-r--r-- 2 ek ek    592429 Jan 13 06:01 input.tar.gz
[2026-01-13 07:04:04] -rw-r--r-- 2 ek ek     15847 Jan 13 06:01 start_atlas.sh
[2026-01-13 07:04:04] -rw------- 1 ek ek 209731536 Jan 13 07:02 HITS.pool.root.1
[2026-01-13 07:04:04] -rw------- 1 ek ek    860160 Jan 13 07:04 result.tar.gz
07:04:06 (2288820): run_atlas exited; CPU time 13959.123688
07:04:06 (2288820): called boinc_finish(0)

</stderr_txt>
]]>

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