Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
08:07:52 (1041361): wrapper (7.7.26015): starting
08:07:52 (1041361): wrapper: running run_atlas (--nthreads 4)
[2026-01-13 08:07:52] Arguments: --nthreads 4
[2026-01-13 08:07:52] Threads: 4
[2026-01-13 08:07:52] Checking for CVMFS
[2026-01-13 08:07:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 08:07:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 08:07:52] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 08:07:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 08:07:52] 2.13.3.0 3346151 6061 45672 155078 0 57 33123044 33554432 0 130560 0 2956053 99.988 207335 221 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-01-13 08:07:52] CVMFS is ok
[2026-01-13 08:07:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 08:07:52] Checking for apptainer binary...
[2026-01-13 08:07:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 08:07:52] Running /usr/bin/apptainer --version
[2026-01-13 08:07:52] apptainer version 1.4.4
[2026-01-13 08:07:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 08:07:52] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-01-13 08:07:52] apptainer works
[2026-01-13 08:07:52] Set ATHENA_PROC_NUMBER=4
[2026-01-13 08:07:52] Set ATHENA_CORE_NUMBER=4
[2026-01-13 08:07:52] Starting ATLAS job with PandaID=6966967276
[2026-01-13 08:07:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 09:11:23]  *** The last 200 lines of the pilot log: ***
[2026-01-13 09:11:23]  is_altstaged=None
[2026-01-13 09:11:23]  is_tar=False
[2026-01-13 09:11:23]  lfn=log.48188640._000229.job.log.tgz.1
[2026-01-13 09:11:23]  mtime=0
[2026-01-13 09:11:23]  protocol_id=None
[2026-01-13 09:11:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-13 09:11:23]  replicas=None
[2026-01-13 09:11:23]  scope=mc23_13p6TeV
[2026-01-13 09:11:23]  status=None
[2026-01-13 09:11:23]  status_code=0
[2026-01-13 09:11:23]  storage_token=
[2026-01-13 09:11:23]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6966967276/log.48188640._000229.job.log.tgz.1
[2026-01-13 09:11:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/e8/log.48188640._000229.job.log.tgz.1
[2026-01-13 09:11:23]  workdir=None
[2026-01-13 09:11:23] ]
[2026-01-13 09:11:23] 2026-01-13 07:10:49,100 | INFO     | transferring file log.48188640._000229.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6966967276/log.48188640._000229.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-01-13 09:11:23] 2026-01-13 07:10:49,100 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6966967276/log.48188640._000229.job.log.tgz.1 /home/ek/BOINC/slots/1/log.48188640._000229.job
[2026-01-13 09:11:23] 2026-01-13 07:10:49,110 | INFO     | adding to output.list: log.48188640._000229.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/e8/log.48188640._000229.job.log.tg
[2026-01-13 09:11:23] 2026-01-13 07:10:49,110 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-13 09:11:23] 2026-01-13 07:10:49,110 | INFO     | summary of transferred files:
[2026-01-13 09:11:23] 2026-01-13 07:10:49,110 | INFO     |  -- lfn=log.48188640._000229.job.log.tgz.1, status_code=0, status=transferred
[2026-01-13 09:11:23] 2026-01-13 07:10:49,111 | INFO     | stage-out finished correctly
[2026-01-13 09:11:23] 2026-01-13 07:10:49,326 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-13 09:11:23] 2026-01-13 07:10:49,623 | INFO     | job 6966967276 has state=finished
[2026-01-13 09:11:23] 2026-01-13 07:10:49,623 | INFO     | preparing for final server update for job 6966967276 in state='finished'
[2026-01-13 09:11:23] 2026-01-13 07:10:49,623 | INFO     | this job has now completed (state=finished)
[2026-01-13 09:11:23] 2026-01-13 07:10:49,623 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-13 09:11:23] 2026-01-13 07:10:49,623 | INFO     | log transfer has been attempted: DONE
[2026-01-13 09:11:23] 2026-01-13 07:10:49,623 | INFO     | job 6966967276 has finished - writing final server update
[2026-01-13 09:11:23] 2026-01-13 07:10:49,623 | INFO     | total number of processed events: 400 (read)
[2026-01-13 09:11:23] 2026-01-13 07:10:49,624 | INFO     | executing command: lscpu
[2026-01-13 09:11:23] 2026-01-13 07:10:49,637 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-13 09:11:23] 2026-01-13 07:10:50,596 | INFO     | time since job start (3772s) is within the limit (349056.0s)
[2026-01-13 09:11:23] 2026-01-13 07:10:51,436 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-13 09:11:23] 2026-01-13 07:10:51,438 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 4176.517833333334
[2026-01-13 09:11:23] 2026-01-13 07:10:51,440 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6966967276/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 09:11:23] 2026-01-13 07:10:51,440 | INFO     | extracted standard info from prmon json
[2026-01-13 09:11:23] 2026-01-13 07:10:51,440 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 09:11:23] 2026-01-13 07:10:51,440 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 09:11:23] 2026-01-13 07:10:51,440 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 09:11:23] 2026-01-13 07:10:51,440 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | fitting pss+swap vs Time
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | sum of square deviations: 51573060.0
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | sum of deviations: 597004377.0
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | mean x: 1768286448.0
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | mean y: 2394682.109090909
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | intersect: -20467105270.885414
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | chi2: 0.0006391086204278902
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | current memory leak: 11.58 B/s (using 55 data points, chi2=0.00)
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | could have reported an average CPU frequency of 4238 MHz (6 samples)
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | ..............................
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | . Timing measurements:
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | . get job = 0 s
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | . initial setup = 1 s
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | . payload setup = 2 s
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | . stage-in = 0 s
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | . payload execution = 3751 s
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | . stage-out = 0 s
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | . log creation = 0 s
[2026-01-13 09:11:23] 2026-01-13 07:10:51,441 | INFO     | ..............................
[2026-01-13 09:11:23] 2026-01-13 07:10:51,471 | INFO     | 
[2026-01-13 09:11:23] 2026-01-13 07:10:51,471 | INFO     | job summary report
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | --------------------------------------------------
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | PanDA job id: 6966967276
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | task id: 48188640
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | errors: (none)
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | pilot state: finished 
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | transexitcode: 0
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | exeerrorcode: 0
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | exeerrordiag: 
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | exitcode: 0
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | exitmsg: OK
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | cpuconsumptiontime: 14406 s
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | nevents: 400
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | neventsw: 0
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | pid: 1067044
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | pgrp: 1067044
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | corecount: 4
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | event service: False
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | sizes: {0: 2284142, 2: 2284404, 11: 2284432, 3757: 2319332, 3758: 2319332, 3760: 2319526}
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | --------------------------------------------------
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | 
[2026-01-13 09:11:23] 2026-01-13 07:10:51,472 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2026-01-13 09:11:23] 2026-01-13 07:10:51,481 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,481 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | job 6966967276 has completed (purged errors)
[2026-01-13 09:11:23] 2026-01-13 07:10:51,482 | INFO     | overall cleanup function is called
[2026-01-13 09:11:23] 2026-01-13 07:10:51,736 | WARNING  | process 1067044 can no longer be monitored (due to stat problems) - aborting
[2026-01-13 09:11:23] 2026-01-13 07:10:51,801 | INFO     | using path: /home/ek/BOINC/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 09:11:23] 2026-01-13 07:10:51,904 | INFO     | number of running child processes to parent process 1067044: 1
[2026-01-13 09:11:23] 2026-01-13 07:10:51,904 | INFO     | maximum number of monitored processes: 6
[2026-01-13 09:11:23] 2026-01-13 07:10:51,904 | INFO     | aborting job monitoring since job object (job id=6966967276) has expired
[2026-01-13 09:11:23] 2026-01-13 07:10:52,489 | INFO     | --- collectZombieJob: --- 10, [1067044]
[2026-01-13 09:11:23] 2026-01-13 07:10:52,489 | INFO     | zombie collector waiting for pid 1067044
[2026-01-13 09:11:23] 2026-01-13 07:10:52,489 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 09:11:23] 2026-01-13 07:10:52,489 | INFO     | collected zombie processes
[2026-01-13 09:11:23] 2026-01-13 07:10:52,489 | INFO     | will attempt to kill all subprocesses of pid=1067044
[2026-01-13 09:11:23] 2026-01-13 07:10:52,599 | INFO     | process IDs to be killed: [1067044] (in reverse order)
[2026-01-13 09:11:23] 2026-01-13 07:10:52,631 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 09:11:23] 2026-01-13 07:10:52,632 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 09:11:23] 2026-01-13 07:10:52,635 | INFO     | did not find any defunct processes belonging to 1067044
[2026-01-13 09:11:23] 2026-01-13 07:10:52,637 | INFO     | did not find any defunct processes belonging to 1067044
[2026-01-13 09:11:23] 2026-01-13 07:10:52,637 | INFO     | ready for new job
[2026-01-13 09:11:23] 2026-01-13 07:10:52,637 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 09:11:23] 2026-01-13 07:10:52,638 | INFO     | ***************************************
[2026-01-13 09:11:23] 2026-01-13 07:10:52,638 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 09:11:23] 2026-01-13 07:10:52,638 | INFO     | ***************************************
[2026-01-13 09:11:23] 2026-01-13 07:10:52,638 | INFO     | 
[2026-01-13 09:11:23] 2026-01-13 07:10:52,639 | INFO     | architecture information:
[2026-01-13 09:11:23] 2026-01-13 07:10:52,639 | INFO     | executing command: cat /etc/os-release
[2026-01-13 09:11:23] 2026-01-13 07:10:52,647 | INFO     | cat /etc/os-release:
[2026-01-13 09:11:23] NAME="CentOS Linux"
[2026-01-13 09:11:23] VERSION="7 (Core)"
[2026-01-13 09:11:23] ID="centos"
[2026-01-13 09:11:23] ID_LIKE="rhel fedora"
[2026-01-13 09:11:23] VERSION_ID="7"
[2026-01-13 09:11:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 09:11:23] ANSI_COLOR="0;31"
[2026-01-13 09:11:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 09:11:23] HOME_URL="https://www.centos.org/"
[2026-01-13 09:11:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 09:11:23] 
[2026-01-13 09:11:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 09:11:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 09:11:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 09:11:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 09:11:23] 
[2026-01-13 09:11:23] 2026-01-13 07:10:52,647 | INFO     | ***************************************
[2026-01-13 09:11:23] 2026-01-13 07:10:53,150 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-01-13 09:11:23] 2026-01-13 07:10:53,158 | INFO     | sufficient remaining disk space (47884271616 B)
[2026-01-13 09:11:23] 2026-01-13 07:10:53,158 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 09:11:23] 2026-01-13 07:10:53,159 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 09:11:23] 2026-01-13 07:10:53,159 | INFO     | update_server=False
[2026-01-13 09:11:23] 2026-01-13 07:10:53,159 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 09:11:23] 2026-01-13 07:10:53,159 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 09:11:23] 2026-01-13 07:10:53,159 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 09:11:23] 2026-01-13 07:10:53,159 | INFO     | aborting loop
[2026-01-13 09:11:23] 2026-01-13 07:10:53,381 | INFO     | all payload control threads have been joined
[2026-01-13 09:11:23] 2026-01-13 07:10:54,164 | INFO     | [job] retrieve thread has finished
[2026-01-13 09:11:23] 2026-01-13 07:10:54,164 | INFO     | [job] queue monitor thread has finished
[2026-01-13 09:11:23] 2026-01-13 07:10:54,164 | INFO     | [job] job monitor thread has finished
[2026-01-13 09:11:23] 2026-01-13 07:10:54,204 | INFO     | all data control threads have been joined
[2026-01-13 09:11:23] 2026-01-13 07:10:54,262 | INFO     | all job control threads have been joined
[2026-01-13 09:11:23] 2026-01-13 07:10:54,386 | INFO     | [payload] control thread has finished
[2026-01-13 09:11:23] 2026-01-13 07:10:54,474 | INFO     | [data] copytool_in thread has finished
[2026-01-13 09:11:23] 2026-01-13 07:10:54,648 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 09:11:23] 2026-01-13 07:10:54,650 | INFO     | [payload] validate_post thread has finished
[2026-01-13 09:11:23] 2026-01-13 07:10:55,209 | INFO     | [data] control thread has finished
[2026-01-13 09:11:23] 2026-01-13 07:10:55,268 | INFO     | [job] control thread has finished
[2026-01-13 09:11:23] 2026-01-13 07:10:55,363 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 09:11:23] 2026-01-13 07:10:55,428 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 09:11:23] 2026-01-13 07:10:55,472 | INFO     | [job] validate thread has finished
[2026-01-13 09:11:23] 2026-01-13 07:10:55,520 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 09:11:23] 2026-01-13 07:10:55,570 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 09:11:23] 2026-01-13 07:10:55,717 | INFO     | [payload] failed_post thread has finished
[2026-01-13 09:11:23] 2026-01-13 07:10:56,654 | INFO     | [data] copytool_out thread has finished
[2026-01-13 09:11:23] 2026-01-13 07:10:59,368 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 09:11:23] 2026-01-13 07:11:04,174 | INFO     | job.realtimelogging is not enabled
[2026-01-13 09:11:23] 2026-01-13 07:11:04,234 | INFO     | [monitor] cgroup control has ended
[2026-01-13 09:11:23] 2026-01-13 07:11:05,179 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 09:11:23] 2026-01-13 07:11:06,094 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139683514705728)>', '<ExcThread(monitor, started 139682780268288)>']
[2026-01-13 09:11:23] 2026-01-13 07:11:11,119 | INFO     | all workflow threads have been joined
[2026-01-13 09:11:23] 2026-01-13 07:11:11,119 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 09:11:23] 2026-01-13 07:11:11,119 | INFO     | traces error code: 0
[2026-01-13 09:11:23] 2026-01-13 07:11:11,119 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 09:11:23] 2026-01-13 07:11:23,776 | INFO     | PID=1048743 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 09:11:23] 2026-01-13 07:11:23,776 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 09:11:23] 2026-01-13 07:11:23,776 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 09:11:23] 2026-01-13 07:11:23,776 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 09:11:23] 2026-01-13 07:11:23,776 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 09:11:23] 2026-01-13 07:11:23,776 | INFO     | [monitor] control thread has ended
[2026-01-13 09:11:23] 2026-01-13 07:11:23,835 [wrapper] ==== pilot stdout END ====
[2026-01-13 09:11:23] 2026-01-13 07:11:23,836 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 09:11:23] 2026-01-13 07:11:23,838 [wrapper] pilotpid: 1048743
[2026-01-13 09:11:23] 2026-01-13 07:11:23,839 [wrapper] Pilot exit status: 0
[2026-01-13 09:11:23] 2026-01-13 07:11:23,846 [wrapper] pandaids: 6966967276
[2026-01-13 09:11:23] 2026-01-13 07:11:23,868 [wrapper] cleanup supervisor_pilot  239397 1048744
[2026-01-13 09:11:23] 2026-01-13 07:11:23,869 [wrapper] Test setup, not cleaning
[2026-01-13 09:11:23] 2026-01-13 07:11:23,871 [wrapper] apfmon messages muted
[2026-01-13 09:11:23] 2026-01-13 07:11:23,872 [wrapper] ==== wrapper stdout END ====
[2026-01-13 09:11:23] 2026-01-13 07:11:23,874 [wrapper] ==== wrapper stderr END ====
[2026-01-13 09:11:23]  *** Error codes and diagnostics ***
[2026-01-13 09:11:23]     "exeErrorCode": 0,
[2026-01-13 09:11:23]     "exeErrorDiag": "",
[2026-01-13 09:11:23]     "pilotErrorCode": 0,
[2026-01-13 09:11:23]     "pilotErrorDiag": "",
[2026-01-13 09:11:23]  *** Listing of results directory ***
[2026-01-13 09:11:23] total 501756
[2026-01-13 09:11:23] -rw-r--r-- 1 ek ek    579449 Jan 12 14:21 pilot3.tar.gz
[2026-01-13 09:11:23] -rw-r--r-- 1 ek ek      5112 Jan 12 14:25 queuedata.json
[2026-01-13 09:11:23] -rwx------ 1 ek ek     36322 Jan 12 14:25 runpilot2-wrapper.sh
[2026-01-13 09:11:23] -rw-rw-r-- 1 ek ek       100 Jan 13 08:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 09:11:23] -rwxr-xr-x 1 ek ek      7986 Jan 13 08:07 run_atlas
[2026-01-13 09:11:23] -rw-rw-r-- 1 ek ek       105 Jan 13 08:07 job.xml
[2026-01-13 09:11:23] -rw-r--r-- 2 ek ek 293124801 Jan 13 08:07 EVNT.48188638._000010.pool.root.1
[2026-01-13 09:11:23] drwxrwx--x 2 ek ek      4096 Jan 13 08:07 shared
[2026-01-13 09:11:23] -rw-r--r-- 2 ek ek    592431 Jan 13 08:07 input.tar.gz
[2026-01-13 09:11:23] -rw-r--r-- 2 ek ek     15847 Jan 13 08:07 start_atlas.sh
[2026-01-13 09:11:23] -rw-rw-r-- 1 ek ek         0 Jan 13 08:07 boinc_setup_complete
[2026-01-13 09:11:23] -rw-rw-r-- 1 ek ek      9841 Jan 13 08:07 init_data.xml
[2026-01-13 09:11:23] -rw-rw-r-- 1 ek ek         0 Jan 13 08:07 boinc_lockfile
[2026-01-13 09:11:23] -rw-rw-r-- 1 ek ek      2650 Jan 13 08:07 pandaJob.out
[2026-01-13 09:11:23] -rw------- 1 ek ek        50 Jan 13 08:07 setup.sh.local
[2026-01-13 09:11:23] -rw------- 1 ek ek    991918 Jan 13 08:07 agis_schedconf.cvmfs.json
[2026-01-13 09:11:23] -rw------- 1 ek ek   1516240 Jan 13 08:07 agis_ddmendpoints.agis.ALL.json
[2026-01-13 09:11:23] drwx------ 5 ek ek      4096 Jan 13 08:07 pilot3
[2026-01-13 09:11:23] -rw------- 1 ek ek        95 Jan 13 09:10 pilot_heartbeat.json
[2026-01-13 09:11:23] -rw------- 1 ek ek 215087523 Jan 13 09:10 HITS.48188640._000229.pool.root.1
[2026-01-13 09:11:23] -rw------- 1 ek ek      1031 Jan 13 09:10 memory_monitor_summary.json
[2026-01-13 09:11:23] -rw------- 1 ek ek    266210 Jan 13 09:10 log.48188640._000229.job.log.tgz.1
[2026-01-13 09:11:23] -rw------- 1 ek ek      7742 Jan 13 09:10 heartbeat.json
[2026-01-13 09:11:23] -rw-rw-r-- 1 ek ek        27 Jan 13 09:10 wrapper_checkpoint.txt
[2026-01-13 09:11:23] -rw-rw-r-- 1 ek ek      8192 Jan 13 09:10 boinc_mmap_file
[2026-01-13 09:11:23] -rw-rw-r-- 1 ek ek       529 Jan 13 09:10 boinc_task_state.xml
[2026-01-13 09:11:23] -rw------- 1 ek ek       747 Jan 13 09:11 pilotlog.txt
[2026-01-13 09:11:23] -rw------- 1 ek ek    566672 Jan 13 09:11 log.48188640._000229.job.log.1
[2026-01-13 09:11:23] -rw------- 1 ek ek       357 Jan 13 09:11 output.list
[2026-01-13 09:11:23] -rw-rw-r-- 1 ek ek       620 Jan 13 09:11 runtime_log
[2026-01-13 09:11:23] -rw------- 1 ek ek    849920 Jan 13 09:11 result.tar.gz
[2026-01-13 09:11:23] -rw------- 1 ek ek       661 Jan 13 09:11 Wj6MDmUAWz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzanKDmvKn6Bn.diag
[2026-01-13 09:11:23] -rw-rw-r-- 1 ek ek      9502 Jan 13 09:11 runtime_log.err
[2026-01-13 09:11:23] -rw-rw-r-- 1 ek ek     21332 Jan 13 09:11 stderr.txt
[2026-01-13 09:11:23] HITS file was successfully produced:
[2026-01-13 09:11:23] -rw------- 1 ek ek 215087523 Jan 13 09:10 shared/HITS.pool.root.1
[2026-01-13 09:11:23]  *** Contents of shared directory: ***
[2026-01-13 09:11:23] total 497740
[2026-01-13 09:11:23] -rw-r--r-- 2 ek ek 293124801 Jan 13 08:07 ATLAS.root_0
[2026-01-13 09:11:23] -rw-r--r-- 2 ek ek    592431 Jan 13 08:07 input.tar.gz
[2026-01-13 09:11:23] -rw-r--r-- 2 ek ek     15847 Jan 13 08:07 start_atlas.sh
[2026-01-13 09:11:23] -rw------- 1 ek ek 215087523 Jan 13 09:10 HITS.pool.root.1
[2026-01-13 09:11:23] -rw------- 1 ek ek    849920 Jan 13 09:11 result.tar.gz
09:11:24 (1041361): run_atlas exited; CPU time 14444.294490
09:11:24 (1041361): called boinc_finish(0)

</stderr_txt>
]]>

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