Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:16:44 (10552): wrapper (7.7.26015): starting
13:16:44 (10552): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 13:16:44] Arguments: --nthreads 8
[2026-01-12 13:16:44] Threads: 8
[2026-01-12 13:16:44] Checking for CVMFS
[2026-01-12 13:16:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 13:16:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 13:16:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 13:16:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 13:16:50] 2.11.2.0 29086 39723 102288 155051 0 11 18926954 25165825 96 130560 0 15464636 99.793 10919165 2808 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-12 13:16:50] CVMFS is ok
[2026-01-12 13:16:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 13:16:50] Checking for apptainer binary...
[2026-01-12 13:16:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 13:16:50] Running /usr/bin/apptainer --version
[2026-01-12 13:16:50] apptainer version 1.3.2-1.el7
[2026-01-12 13:16:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 13:17:01] cg-vwn413.simple-grid.lan
[2026-01-12 13:17:01] apptainer works
[2026-01-12 13:17:01] Set ATHENA_PROC_NUMBER=8
[2026-01-12 13:17:01] Set ATHENA_CORE_NUMBER=8
[2026-01-12 13:17:01] Starting ATLAS job with PandaID=6966962271
[2026-01-12 13:17:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 19:40:11]  *** The last 200 lines of the pilot log: ***
[2026-01-12 19:40:11] 2026-01-12 18:39:07,260 | INFO     | time since job start (22665s) is within the limit (349056.0s)
[2026-01-12 19:40:11] 2026-01-12 18:39:07,496 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-12 19:40:11] 2026-01-12 18:39:07,497 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-12 19:40:11] 2026-01-12 18:39:07,499 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6966962271/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 19:40:11] 2026-01-12 18:39:07,500 | INFO     | extracted standard info from prmon json
[2026-01-12 19:40:11] 2026-01-12 18:39:07,500 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 19:40:11] 2026-01-12 18:39:07,500 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 19:40:11] 2026-01-12 18:39:07,500 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-12 19:40:11] 2026-01-12 18:39:07,501 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-12 19:40:11] 2026-01-12 18:39:07,515 | INFO     | fitting pss+swap vs Time
[2026-01-12 19:40:11] 2026-01-12 18:39:07,516 | INFO     | sum of square deviations: 14588031660.0
[2026-01-12 19:40:11] 2026-01-12 18:39:07,520 | INFO     | sum of deviations: 209922398250.99997
[2026-01-12 19:40:11] 2026-01-12 18:39:07,521 | INFO     | mean x: 1768232020.0
[2026-01-12 19:40:11] 2026-01-12 18:39:07,521 | INFO     | mean y: 2457870.8753462606
[2026-01-12 19:40:11] 2026-01-12 18:39:07,521 | INFO     | intersect: -25442476370.69252
[2026-01-12 19:40:11] 2026-01-12 18:39:07,521 | INFO     | chi2: 9.008803840187532
[2026-01-12 19:40:11] 2026-01-12 18:39:07,522 | INFO     | sum of square deviations: 13990234405.0
[2026-01-12 19:40:11] 2026-01-12 18:39:07,526 | INFO     | sum of deviations: 230558419114.99997
[2026-01-12 19:40:11] 2026-01-12 18:39:07,527 | INFO     | mean x: 1768231867.5
[2026-01-12 19:40:11] 2026-01-12 18:39:07,527 | INFO     | mean y: 2463066.612359551
[2026-01-12 19:40:11] 2026-01-12 18:39:07,527 | INFO     | intersect: -29137916729.587643
[2026-01-12 19:40:11] 2026-01-12 18:39:07,527 | INFO     | chi2: 8.297144021008304
[2026-01-12 19:40:11] 2026-01-12 18:39:07,528 | INFO     | current chi2=8.297144021008304 (change=7.899603896408229 %)
[2026-01-12 19:40:11] 2026-01-12 18:39:07,528 | INFO     | right removable region: 355
[2026-01-12 19:40:11] 2026-01-12 18:39:07,528 | INFO     | sum of square deviations: 13990234405.0
[2026-01-12 19:40:11] 2026-01-12 18:39:07,532 | INFO     | sum of deviations: 81967377804.99998
[2026-01-12 19:40:11] 2026-01-12 18:39:07,533 | INFO     | mean x: 1768232172.5
[2026-01-12 19:40:11] 2026-01-12 18:39:07,533 | INFO     | mean y: 2490499.595505618
[2026-01-12 19:40:11] 2026-01-12 18:39:07,533 | INFO     | intersect: -10357404147.949781
[2026-01-12 19:40:11] 2026-01-12 18:39:07,534 | INFO     | chi2: 4.036161811480079
[2026-01-12 19:40:11] 2026-01-12 18:39:07,534 | INFO     | current chi2=4.036161811480079 (change=55.197583574024634 %)
[2026-01-12 19:40:11] 2026-01-12 18:39:07,534 | INFO     | sum of square deviations: 13408995600.0
[2026-01-12 19:40:11] 2026-01-12 18:39:07,555 | INFO     | sum of deviations: -20518623558.00001
[2026-01-12 19:40:11] 2026-01-12 18:39:07,555 | INFO     | mean x: 1768232325.0
[2026-01-12 19:40:11] 2026-01-12 18:39:07,555 | INFO     | mean y: 2517367.3304843307
[2026-01-12 19:40:11] 2026-01-12 18:39:07,555 | INFO     | intersect: 2708290008.4790974
[2026-01-12 19:40:11] 2026-01-12 18:39:07,556 | INFO     | chi2: 1.0243407559513646
[2026-01-12 19:40:11] 2026-01-12 18:39:07,556 | INFO     | current chi2=1.0243407559513646 (change=74.62091948251862 %)
[2026-01-12 19:40:11] 2026-01-12 18:39:07,557 | INFO     | sum of square deviations: 12844082682.5
[2026-01-12 19:40:11] 2026-01-12 18:39:07,560 | INFO     | sum of deviations: -40794631907.5
[2026-01-12 19:40:11] 2026-01-12 18:39:07,561 | INFO     | mean x: 1768232477.5
[2026-01-12 19:40:11] 2026-01-12 18:39:07,561 | INFO     | mean y: 2522821.5693641617
[2026-01-12 19:40:11] 2026-01-12 18:39:07,561 | INFO     | intersect: 5618680458.485081
[2026-01-12 19:40:11] 2026-01-12 18:39:07,562 | INFO     | chi2: 0.878395933070372
[2026-01-12 19:40:11] 2026-01-12 18:39:07,562 | INFO     | current chi2=0.878395933070372 (change=14.247682915383486 %)
[2026-01-12 19:40:11] 2026-01-12 18:39:07,562 | INFO     | left removable region: 30
[2026-01-12 19:40:11] 2026-01-12 18:39:07,563 | INFO     | sum of square deviations: 10644478650.0
[2026-01-12 19:40:11] 2026-01-12 18:39:07,573 | INFO     | sum of deviations: -4054198347.999998
[2026-01-12 19:40:11] 2026-01-12 18:39:07,574 | INFO     | mean x: 1768232752.0
[2026-01-12 19:40:11] 2026-01-12 18:39:07,574 | INFO     | mean y: 2525133.08
[2026-01-12 19:40:11] 2026-01-12 18:39:07,574 | INFO     | intersect: 675997882.4511391
[2026-01-12 19:40:11] 2026-01-12 18:39:07,574 | INFO     | chi2: 0.06897055366543431
[2026-01-12 19:40:11] 2026-01-12 18:39:07,575 | INFO     | current memory leak: -0.38 B/s (using 325 data points, chi2=0.07)
[2026-01-12 19:40:11] 2026-01-12 18:39:07,575 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-12 19:40:11] 2026-01-12 18:39:07,576 | INFO     | ..............................
[2026-01-12 19:40:11] 2026-01-12 18:39:07,576 | INFO     | . Timing measurements:
[2026-01-12 19:40:11] 2026-01-12 18:39:07,576 | INFO     | . get job = 0 s
[2026-01-12 19:40:11] 2026-01-12 18:39:07,576 | INFO     | . initial setup = 8 s
[2026-01-12 19:40:11] 2026-01-12 18:39:07,576 | INFO     | . payload setup = 151 s
[2026-01-12 19:40:11] 2026-01-12 18:39:07,576 | INFO     | . stage-in = 0 s
[2026-01-12 19:40:11] 2026-01-12 18:39:07,584 | INFO     | . payload execution = 22169 s
[2026-01-12 19:40:11] 2026-01-12 18:39:07,585 | INFO     | . stage-out = 3 s
[2026-01-12 19:40:11] 2026-01-12 18:39:07,585 | INFO     | . log creation = 1 s
[2026-01-12 19:40:11] 2026-01-12 18:39:07,585 | INFO     | ..............................
[2026-01-12 19:40:11] 2026-01-12 18:39:07,743 | INFO     | 
[2026-01-12 19:40:11] 2026-01-12 18:39:07,743 | INFO     | job summary report
[2026-01-12 19:40:11] 2026-01-12 18:39:07,743 | INFO     | --------------------------------------------------
[2026-01-12 19:40:11] 2026-01-12 18:39:07,743 | INFO     | PanDA job id: 6966962271
[2026-01-12 19:40:11] 2026-01-12 18:39:07,743 | INFO     | task id: 47898826
[2026-01-12 19:40:11] 2026-01-12 18:39:07,743 | INFO     | errors: (none)
[2026-01-12 19:40:11] 2026-01-12 18:39:07,744 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 19:40:11] 2026-01-12 18:39:07,744 | INFO     | pilot state: finished 
[2026-01-12 19:40:11] 2026-01-12 18:39:07,744 | INFO     | transexitcode: 0
[2026-01-12 19:40:11] 2026-01-12 18:39:07,744 | INFO     | exeerrorcode: 0
[2026-01-12 19:40:11] 2026-01-12 18:39:07,744 | INFO     | exeerrordiag: 
[2026-01-12 19:40:11] 2026-01-12 18:39:07,744 | INFO     | exitcode: 0
[2026-01-12 19:40:11] 2026-01-12 18:39:07,744 | INFO     | exitmsg: OK
[2026-01-12 19:40:11] 2026-01-12 18:39:07,744 | INFO     | cpuconsumptiontime: 83547 s
[2026-01-12 19:40:11] 2026-01-12 18:39:07,744 | INFO     | nevents: 400
[2026-01-12 19:40:11] 2026-01-12 18:39:07,745 | INFO     | neventsw: 0
[2026-01-12 19:40:11] 2026-01-12 18:39:07,745 | INFO     | pid: 21042
[2026-01-12 19:40:11] 2026-01-12 18:39:07,745 | INFO     | pgrp: 21042
[2026-01-12 19:40:11] 2026-01-12 18:39:07,745 | INFO     | corecount: 8
[2026-01-12 19:40:11] 2026-01-12 18:39:07,745 | INFO     | event service: False
[2026-01-12 19:40:11] 2026-01-12 18:39:07,745 | INFO     | sizes: {0: 2283138, 1: 2283824, 2: 2284023, 13: 2284023, 24: 2284079, 34: 2284107, 45: 2284263, 56: 2284291, 67: 2284319, 77: 2284347, 88: 2284403, 99: 2284711, 10
[2026-01-12 19:40:11] 2026-01-12 18:39:07,745 | INFO     | --------------------------------------------------
[2026-01-12 19:40:11] 2026-01-12 18:39:07,745 | INFO     | 
[2026-01-12 19:40:11] 2026-01-12 18:39:07,745 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2026-01-12 19:40:11] 2026-01-12 18:39:08,270 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,271 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,271 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,271 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,271 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,271 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,271 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,271 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,272 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,272 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,272 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,272 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,272 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,272 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,272 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,272 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,273 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,273 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 19:40:11] 2026-01-12 18:39:08,273 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,273 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 19:40:11] 2026-01-12 18:39:08,273 | INFO     | job 6966962271 has completed (purged errors)
[2026-01-12 19:40:11] 2026-01-12 18:39:08,273 | INFO     | overall cleanup function is called
[2026-01-12 19:40:11] 2026-01-12 18:39:09,290 | INFO     | --- collectZombieJob: --- 10, [21042]
[2026-01-12 19:40:11] 2026-01-12 18:39:09,291 | INFO     | zombie collector waiting for pid 21042
[2026-01-12 19:40:11] 2026-01-12 18:39:09,291 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 19:40:11] 2026-01-12 18:39:09,291 | INFO     | collected zombie processes
[2026-01-12 19:40:11] 2026-01-12 18:39:09,291 | INFO     | will attempt to kill all subprocesses of pid=21042
[2026-01-12 19:40:11] 2026-01-12 18:39:09,393 | INFO     | process IDs to be killed: [21042] (in reverse order)
[2026-01-12 19:40:11] 2026-01-12 18:39:09,909 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 19:40:11] 2026-01-12 18:39:09,909 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 19:40:11] 2026-01-12 18:39:09,919 | INFO     | did not find any defunct processes belonging to 21042
[2026-01-12 19:40:11] 2026-01-12 18:39:09,921 | INFO     | did not find any defunct processes belonging to 21042
[2026-01-12 19:40:11] 2026-01-12 18:39:09,921 | INFO     | ready for new job
[2026-01-12 19:40:11] 2026-01-12 18:39:09,921 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 19:40:11] 2026-01-12 18:39:09,924 | INFO     | ***************************************
[2026-01-12 19:40:11] 2026-01-12 18:39:09,924 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 19:40:11] 2026-01-12 18:39:09,924 | INFO     | ***************************************
[2026-01-12 19:40:11] 2026-01-12 18:39:09,924 | INFO     | 
[2026-01-12 19:40:11] 2026-01-12 18:39:09,925 | INFO     | pilot is running in a VM
[2026-01-12 19:40:11] 2026-01-12 18:39:09,925 | INFO     | architecture information:
[2026-01-12 19:40:11] 2026-01-12 18:39:09,933 | INFO     | executing command: cat /etc/os-release
[2026-01-12 19:40:11] 2026-01-12 18:39:10,207 | INFO     | cat /etc/os-release:
[2026-01-12 19:40:11] NAME="CentOS Linux"
[2026-01-12 19:40:11] VERSION="7 (Core)"
[2026-01-12 19:40:11] ID="centos"
[2026-01-12 19:40:11] ID_LIKE="rhel fedora"
[2026-01-12 19:40:11] VERSION_ID="7"
[2026-01-12 19:40:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 19:40:11] ANSI_COLOR="0;31"
[2026-01-12 19:40:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 19:40:11] HOME_URL="https://www.centos.org/"
[2026-01-12 19:40:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 19:40:11] 
[2026-01-12 19:40:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 19:40:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 19:40:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 19:40:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 19:40:11] 
[2026-01-12 19:40:11] 2026-01-12 18:39:10,207 | INFO     | ***************************************
[2026-01-12 19:40:11] 2026-01-12 18:39:10,711 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2026-01-12 19:40:11] 2026-01-12 18:39:10,980 | INFO     | sufficient remaining disk space (495410216960 B)
[2026-01-12 19:40:11] 2026-01-12 18:39:10,980 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 19:40:11] 2026-01-12 18:39:10,981 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 19:40:11] 2026-01-12 18:39:10,981 | INFO     | update_server=False
[2026-01-12 19:40:11] 2026-01-12 18:39:10,981 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 19:40:11] 2026-01-12 18:39:10,981 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 19:40:11] 2026-01-12 18:39:11,415 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 19:40:11] 2026-01-12 18:39:11,419 | INFO     | all job control threads have been joined
[2026-01-12 19:40:11] 2026-01-12 18:39:11,426 | INFO     | all data control threads have been joined
[2026-01-12 19:40:11] 2026-01-12 18:39:11,941 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 19:40:11] 2026-01-12 18:39:11,942 | INFO     | aborting loop
[2026-01-12 19:40:11] 2026-01-12 18:39:11,987 | INFO     | [job] retrieve thread has finished
[2026-01-12 19:40:11] 2026-01-12 18:39:12,199 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 19:40:11] 2026-01-12 18:39:12,365 | INFO     | all payload control threads have been joined
[2026-01-12 19:40:11] 2026-01-12 18:39:12,426 | INFO     | [job] control thread has finished
[2026-01-12 19:40:11] 2026-01-12 18:39:12,432 | INFO     | [data] control thread has finished
[2026-01-12 19:40:11] 2026-01-12 18:39:12,508 | INFO     | [payload] validate_post thread has finished
[2026-01-12 19:40:11] 2026-01-12 18:39:12,757 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 19:40:11] 2026-01-12 18:39:12,789 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 19:40:11] 2026-01-12 18:39:12,947 | INFO     | [job] job monitor thread has finished
[2026-01-12 19:40:11] 2026-01-12 18:39:12,988 | INFO     | [data] copytool_out thread has finished
[2026-01-12 19:40:11] 2026-01-12 18:39:13,097 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 19:40:11] 2026-01-12 18:39:13,119 | INFO     | [data] copytool_in thread has finished
[2026-01-12 19:40:11] 2026-01-12 18:39:13,205 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 19:40:11] 2026-01-12 18:39:13,214 | INFO     | [job] validate thread has finished
[2026-01-12 19:40:11] 2026-01-12 18:39:13,371 | INFO     | [payload] control thread has finished
[2026-01-12 19:40:11] 2026-01-12 18:39:13,373 | INFO     | [payload] failed_post thread has finished
[2026-01-12 19:40:11] 2026-01-12 18:39:13,763 | INFO     | [job] queue monitor thread has finished
[2026-01-12 19:40:11] 2026-01-12 18:39:15,424 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 19:40:11] 2026-01-12 18:39:40,430 | INFO     | PID=14590 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-12 19:40:11] 2026-01-12 18:39:40,430 | INFO     | .. there are 2 such processes running
[2026-01-12 19:40:11] 2026-01-12 18:39:40,431 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 19:40:11] 2026-01-12 18:39:40,431 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 19:40:11] 2026-01-12 18:39:40,431 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 19:40:11] 2026-01-12 18:40:01,100 | INFO     | [monitor] cgroup control has ended
[2026-01-12 19:40:11] 2026-01-12 18:40:01,321 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140388087437120)>', '<ExcThread(monitor, started 140387868841728)>']
[2026-01-12 19:40:11] 2026-01-12 18:40:01,557 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 19:40:11] 2026-01-12 18:40:01,558 | INFO     | [monitor] control thread has ended
[2026-01-12 19:40:11] 2026-01-12 18:40:06,347 | INFO     | all workflow threads have been joined
[2026-01-12 19:40:11] 2026-01-12 18:40:06,348 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 19:40:11] 2026-01-12 18:40:06,348 | INFO     | traces error code: 0
[2026-01-12 19:40:11] 2026-01-12 18:40:06,348 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 19:40:11] 2026-01-12 18:40:06,785 [wrapper] ==== pilot stdout END ====
[2026-01-12 19:40:11] 2026-01-12 18:40:06,879 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 19:40:11] 2026-01-12 18:40:06,971 [wrapper] pilotpid: 14590
[2026-01-12 19:40:11] 2026-01-12 18:40:07,066 [wrapper] Pilot exit status: 0
[2026-01-12 19:40:11] 2026-01-12 18:40:07,546 [wrapper] pandaids: 6966962271
[2026-01-12 19:40:11] 2026-01-12 18:40:08,403 [wrapper] cleanup supervisor_pilot 22687 14591
[2026-01-12 19:40:11] 2026-01-12 18:40:08,518 [wrapper] Test setup, not cleaning
[2026-01-12 19:40:11] 2026-01-12 18:40:08,632 [wrapper] apfmon messages muted
[2026-01-12 19:40:11] 2026-01-12 18:40:08,729 [wrapper] ==== wrapper stdout END ====
[2026-01-12 19:40:11] 2026-01-12 18:40:08,816 [wrapper] ==== wrapper stderr END ====
[2026-01-12 19:40:11]  *** Error codes and diagnostics ***
[2026-01-12 19:40:11]     "exeErrorCode": 0,
[2026-01-12 19:40:11]     "exeErrorDiag": "",
[2026-01-12 19:40:11]     "pilotErrorCode": 0,
[2026-01-12 19:40:11]     "pilotErrorDiag": "",
[2026-01-12 19:40:11]  *** Listing of results directory ***
[2026-01-12 19:40:11] total 457088
[2026-01-12 19:40:11] -rw-r--r--. 1 boinc boinc    579449 Jan 12 12:23 pilot3.tar.gz
[2026-01-12 19:40:11] -rwx------. 1 boinc boinc     36322 Jan 12 13:03 runpilot2-wrapper.sh
[2026-01-12 19:40:11] -rw-r--r--. 1 boinc boinc      5112 Jan 12 13:03 queuedata.json
[2026-01-12 19:40:11] -rw-r--r--. 1 boinc boinc       100 Jan 12 13:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 19:40:11] -rwxr-xr-x. 1 boinc boinc      7986 Jan 12 13:16 run_atlas
[2026-01-12 19:40:11] -rw-r--r--. 1 boinc boinc       105 Jan 12 13:16 job.xml
[2026-01-12 19:40:11] -rw-r--r--. 2 boinc boinc 227209861 Jan 12 13:16 EVNT.47898824._000392.pool.root.1
[2026-01-12 19:40:11] -rw-r--r--. 2 boinc boinc     15847 Jan 12 13:16 start_atlas.sh
[2026-01-12 19:40:11] drwxrwx--x. 2 boinc boinc        68 Jan 12 13:16 shared
[2026-01-12 19:40:11] -rw-r--r--. 2 boinc boinc    592392 Jan 12 13:16 input.tar.gz
[2026-01-12 19:40:11] -rw-r--r--. 1 boinc boinc      6392 Jan 12 13:16 init_data.xml
[2026-01-12 19:40:11] -rw-r--r--. 1 boinc boinc         0 Jan 12 13:16 boinc_lockfile
[2026-01-12 19:40:11] -rw-r--r--. 1 boinc boinc      2516 Jan 12 13:17 pandaJob.out
[2026-01-12 19:40:11] -rw-------. 1 boinc boinc    987696 Jan 12 13:21 agis_schedconf.cvmfs.json
[2026-01-12 19:40:11] drwx------. 5 boinc boinc      4096 Jan 12 13:21 pilot3
[2026-01-12 19:40:11] -rw-------. 1 boinc boinc 229815612 Jan 12 19:35 HITS.47898826._040882.pool.root.1
[2026-01-12 19:40:11] -rw-r--r--. 1 boinc boinc       531 Jan 12 19:35 boinc_task_state.xml
[2026-01-12 19:40:11] -rw-------. 1 boinc boinc      1016 Jan 12 19:37 memory_monitor_summary.json
[2026-01-12 19:40:11] -rw-------. 1 boinc boinc   1516240 Jan 12 19:37 agis_ddmendpoints.agis.ALL.json
[2026-01-12 19:40:11] -rw-------. 1 boinc boinc    562782 Jan 12 19:37 log.47898826._040882.job.log.tgz.1
[2026-01-12 19:40:11] -rw-------. 1 boinc boinc      7781 Jan 12 19:39 heartbeat.json
[2026-01-12 19:40:11] -rw-------. 1 boinc boinc        95 Jan 12 19:39 pilot_heartbeat.json
[2026-01-12 19:40:11] -rw-r--r--. 1 boinc boinc      8192 Jan 12 19:39 boinc_mmap_file
[2026-01-12 19:40:11] -rw-r--r--. 1 boinc boinc        28 Jan 12 19:39 wrapper_checkpoint.txt
[2026-01-12 19:40:11] -rw-------. 1 boinc boinc      4885 Jan 12 19:40 pilotlog.txt
[2026-01-12 19:40:11] -rw-------. 1 boinc boinc   3005085 Jan 12 19:40 log.47898826._040882.job.log.1
[2026-01-12 19:40:11] -rw-------. 1 boinc boinc       357 Jan 12 19:40 output.list
[2026-01-12 19:40:11] -rw-r--r--. 1 boinc boinc       620 Jan 12 19:40 runtime_log
[2026-01-12 19:40:11] -rw-------. 1 boinc boinc   3584000 Jan 12 19:40 result.tar.gz
[2026-01-12 19:40:11] -rw-r--r--. 1 boinc boinc      8833 Jan 12 19:40 runtime_log.err
[2026-01-12 19:40:11] -rw-------. 1 boinc boinc       657 Jan 12 19:40 ikELDmVpVz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOZnKDmCmOunn.diag
[2026-01-12 19:40:11] -rw-r--r--. 1 boinc boinc     20778 Jan 12 19:40 stderr.txt
[2026-01-12 19:40:12] HITS file was successfully produced:
[2026-01-12 19:40:12] -rw-------. 1 boinc boinc 229815612 Jan 12 19:35 shared/HITS.pool.root.1
[2026-01-12 19:40:12]  *** Contents of shared directory: ***
[2026-01-12 19:40:12] total 450416
[2026-01-12 19:40:12] -rw-r--r--. 2 boinc boinc 227209861 Jan 12 13:16 ATLAS.root_0
[2026-01-12 19:40:12] -rw-r--r--. 2 boinc boinc     15847 Jan 12 13:16 start_atlas.sh
[2026-01-12 19:40:12] -rw-r--r--. 2 boinc boinc    592392 Jan 12 13:16 input.tar.gz
[2026-01-12 19:40:12] -rw-------. 1 boinc boinc 229815612 Jan 12 19:35 HITS.pool.root.1
[2026-01-12 19:40:12] -rw-------. 1 boinc boinc   3584000 Jan 12 19:40 result.tar.gz
19:40:13 (10552): run_atlas exited; CPU time 83781.552811
19:40:13 (10552): called boinc_finish(0)

</stderr_txt>
]]>

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