Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
07:20:35 (168094): wrapper (7.7.26015): starting
07:20:35 (168094): wrapper: running run_atlas (--nthreads 12)
[2026-01-12 07:20:35] Arguments: --nthreads 12
[2026-01-12 07:20:35] Threads: 12
[2026-01-12 07:20:35] Checking for CVMFS
[2026-01-12 07:20:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 07:20:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 07:20:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 07:20:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 07:20:35] 2.13.3.0 107824 99 48152 155054 1 56 4572507 6144000 0 130560 0 72996 99.973 5567 889 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-12 07:20:35] CVMFS is ok
[2026-01-12 07:20:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 07:20:35] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-12 07:20:35] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-12 07:20:35] Further information can be found at the LHC@home message board.
[2026-01-12 07:20:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 07:20:35] Checking for apptainer binary...
[2026-01-12 07:20:35] apptainer is not installed, using version from CVMFS
[2026-01-12 07:20:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 07:20:35] ace
[2026-01-12 07:20:35] apptainer works
[2026-01-12 07:20:35] Set ATHENA_PROC_NUMBER=12
[2026-01-12 07:20:35] Set ATHENA_CORE_NUMBER=12
[2026-01-12 07:20:35] Starting ATLAS job with PandaID=6966954506
[2026-01-12 07:20:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 07:51:52]  *** The last 200 lines of the pilot log: ***
[2026-01-12 07:51:52]  surl=/var/lib/boinc-client/slots/5/PanDA_Pilot-6966954506/log.47962010._003217.job.log.tgz.1
[2026-01-12 07:51:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/12/8a/log.47962010._003217.job.log.tgz.1
[2026-01-12 07:51:52]  workdir=None
[2026-01-12 07:51:52] ]
[2026-01-12 07:51:52] 2026-01-12 13:50:39,861 | INFO     | transferring file log.47962010._003217.job.log.tgz.1 from /var/lib/boinc-client/slots/5/PanDA_Pilot-6966954506/log.47962010._003217.job.log.tgz.1 to /var/lib/boinc
[2026-01-12 07:51:52] 2026-01-12 13:50:39,861 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/5/PanDA_Pilot-6966954506/log.47962010._003217.job.log.tgz.1 /var/lib/boinc-client/slots/5/log.479620
[2026-01-12 07:51:52] 2026-01-12 13:50:39,879 | INFO     | adding to output.list: log.47962010._003217.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/12/8a/log.47962010._003217.job.log.tgz.
[2026-01-12 07:51:52] 2026-01-12 13:50:39,880 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-12 07:51:52] 2026-01-12 13:50:39,880 | INFO     | summary of transferred files:
[2026-01-12 07:51:52] 2026-01-12 13:50:39,880 | INFO     |  -- lfn=log.47962010._003217.job.log.tgz.1, status_code=0, status=transferred
[2026-01-12 07:51:52] 2026-01-12 13:50:39,880 | INFO     | stage-out finished correctly
[2026-01-12 07:51:52] 2026-01-12 13:50:40,518 [wrapper] supervise_pilot (15 min periods counter: 3)
[2026-01-12 07:51:52] 2026-01-12 13:50:41,505 | INFO     | time since job start (1797s) is within the limit (349056.0s)
[2026-01-12 07:51:52] 2026-01-12 13:50:42,651 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-12 07:51:52] 2026-01-12 13:50:42,844 | WARNING  | process 178484 can no longer be monitored (due to stat problems) - aborting
[2026-01-12 07:51:52] 2026-01-12 13:50:42,844 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-6966954506/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 07:51:52] 2026-01-12 13:50:42,922 | INFO     | number of running child processes to parent process 178484: 1
[2026-01-12 07:51:52] 2026-01-12 13:50:42,922 | INFO     | maximum number of monitored processes: 17
[2026-01-12 07:51:52] 2026-01-12 13:50:43,511 | INFO     | time since job start (1799s) is within the limit (349056.0s)
[2026-01-12 07:51:52] 2026-01-12 13:50:44,495 | INFO     | job 6966954506 has state=finished
[2026-01-12 07:51:52] 2026-01-12 13:50:44,495 | INFO     | preparing for final server update for job 6966954506 in state='finished'
[2026-01-12 07:51:52] 2026-01-12 13:50:44,495 | INFO     | this job has now completed (state=finished)
[2026-01-12 07:51:52] 2026-01-12 13:50:44,495 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-12 07:51:52] 2026-01-12 13:50:44,495 | INFO     | log transfer has been attempted: DONE
[2026-01-12 07:51:52] 2026-01-12 13:50:44,495 | INFO     | job 6966954506 has finished - writing final server update
[2026-01-12 07:51:52] 2026-01-12 13:50:44,495 | INFO     | total number of processed events: 50 (read)
[2026-01-12 07:51:52] 2026-01-12 13:50:44,496 | INFO     | executing command: lscpu
[2026-01-12 07:51:52] 2026-01-12 13:50:44,513 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-12 07:51:52] 2026-01-12 13:50:45,423 | INFO     | monitor loop #139: job 0:6966954506 is in state 'finished'
[2026-01-12 07:51:52] 2026-01-12 13:50:45,423 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 07:51:52] 2026-01-12 13:50:45,517 | INFO     | time since job start (1801s) is within the limit (349056.0s)
[2026-01-12 07:51:52] 2026-01-12 13:50:47,522 | INFO     | time since job start (1803s) is within the limit (349056.0s)
[2026-01-12 07:51:52] 2026-01-12 13:50:47,926 | INFO     | monitor loop #140: job 0:6966954506 is in state 'finished'
[2026-01-12 07:51:52] 2026-01-12 13:50:47,926 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 07:51:52] 2026-01-12 13:50:48,642 | INFO     | PID=171890 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-12 07:51:52] 2026-01-12 13:50:49,642 | INFO     | time since job start (1805s) is within the limit (349056.0s)
[2026-01-12 07:51:52] 2026-01-12 13:50:50,429 | INFO     | monitor loop #141: job 0:6966954506 is in state 'finished'
[2026-01-12 07:51:52] 2026-01-12 13:50:50,429 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 07:51:52] 2026-01-12 13:50:50,754 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-12 07:51:52] 2026-01-12 13:50:50,756 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 2701.6176874999996
[2026-01-12 07:51:52] 2026-01-12 13:50:50,758 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-6966954506/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 07:51:52] 2026-01-12 13:50:50,758 | INFO     | extracted standard info from prmon json
[2026-01-12 07:51:52] 2026-01-12 13:50:50,758 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 07:51:52] 2026-01-12 13:50:50,758 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 07:51:52] 2026-01-12 13:50:50,759 | INFO     | fitting pss+swap vs Time
[2026-01-12 07:51:52] 2026-01-12 13:50:50,759 | INFO     | sum of square deviations: 3761019.304347827
[2026-01-12 07:51:52] 2026-01-12 13:50:50,759 | INFO     | sum of deviations: -519056592.3043479
[2026-01-12 07:51:52] 2026-01-12 13:50:50,759 | INFO     | mean x: 1768225040.826087
[2026-01-12 07:51:52] 2026-01-12 13:50:50,759 | INFO     | mean y: 3113312.1739130435
[2026-01-12 07:51:52] 2026-01-12 13:50:50,759 | INFO     | intersect: 244035060464.74408
[2026-01-12 07:51:52] 2026-01-12 13:50:50,759 | INFO     | chi2: 0.12181182337208817
[2026-01-12 07:51:52] 2026-01-12 13:50:50,760 | INFO     | current memory leak: -138.01 B/s (using 23 data points, chi2=0.12)
[2026-01-12 07:51:52] 2026-01-12 13:50:50,760 | INFO     | could have reported an average CPU frequency of 2761 MHz (4 samples)
[2026-01-12 07:51:52] 2026-01-12 13:50:50,760 | INFO     | ..............................
[2026-01-12 07:51:52] 2026-01-12 13:50:50,760 | INFO     | . Timing measurements:
[2026-01-12 07:51:52] 2026-01-12 13:50:50,760 | INFO     | . get job = 0 s
[2026-01-12 07:51:52] 2026-01-12 13:50:50,760 | INFO     | . initial setup = 2 s
[2026-01-12 07:51:52] 2026-01-12 13:50:50,760 | INFO     | . payload setup = 3 s
[2026-01-12 07:51:52] 2026-01-12 13:50:50,760 | INFO     | . stage-in = 0 s
[2026-01-12 07:51:52] 2026-01-12 13:50:50,760 | INFO     | . payload execution = 1773 s
[2026-01-12 07:51:52] 2026-01-12 13:50:50,760 | INFO     | . stage-out = 0 s
[2026-01-12 07:51:52] 2026-01-12 13:50:50,760 | INFO     | . log creation = 0 s
[2026-01-12 07:51:52] 2026-01-12 13:50:50,760 | INFO     | ..............................
[2026-01-12 07:51:52] 2026-01-12 13:50:50,809 | INFO     | 
[2026-01-12 07:51:52] 2026-01-12 13:50:50,809 | INFO     | job summary report
[2026-01-12 07:51:52] 2026-01-12 13:50:50,809 | INFO     | --------------------------------------------------
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | PanDA job id: 6966954506
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | task id: 47962010
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | errors: (none)
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | pilot state: finished 
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | transexitcode: 0
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | exeerrorcode: 0
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | exeerrordiag: 
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | exitcode: 0
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | exitmsg: OK
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | cpuconsumptiontime: 16425 s
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | nevents: 50
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | neventsw: 0
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | pid: 178484
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | pgrp: 178484
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | corecount: 12
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | event service: False
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | sizes: {0: 2284622, 1: 2284622, 3: 2284912, 11: 2284940, 1780: 2310627, 1782: 2319635, 1785: 2319819, 1793: 2320065}
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | --------------------------------------------------
[2026-01-12 07:51:52] 2026-01-12 13:50:50,810 | INFO     | 
[2026-01-12 07:51:52] 2026-01-12 13:50:50,811 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/5
[2026-01-12 07:51:52] 2026-01-12 13:50:50,824 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,824 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,824 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,824 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,824 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,824 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,824 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,824 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,824 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,825 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,825 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,825 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,825 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,825 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,825 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,825 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,825 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,825 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 07:51:52] 2026-01-12 13:50:50,825 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,825 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 07:51:52] 2026-01-12 13:50:50,825 | INFO     | job 6966954506 has completed (purged errors)
[2026-01-12 07:51:52] 2026-01-12 13:50:50,825 | INFO     | overall cleanup function is called
[2026-01-12 07:51:52] 2026-01-12 13:50:51,840 | INFO     | --- collectZombieJob: --- 10, [178484]
[2026-01-12 07:51:52] 2026-01-12 13:50:51,840 | INFO     | zombie collector waiting for pid 178484
[2026-01-12 07:51:52] 2026-01-12 13:50:51,841 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 07:51:52] 2026-01-12 13:50:51,841 | INFO     | collected zombie processes
[2026-01-12 07:51:52] 2026-01-12 13:50:51,841 | INFO     | will attempt to kill all subprocesses of pid=178484
[2026-01-12 07:51:52] 2026-01-12 13:50:51,930 | INFO     | process IDs to be killed: [178484] (in reverse order)
[2026-01-12 07:51:52] 2026-01-12 13:50:51,966 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 07:51:52] 2026-01-12 13:50:51,967 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 07:51:52] 2026-01-12 13:50:51,970 | INFO     | did not find any defunct processes belonging to 178484
[2026-01-12 07:51:52] 2026-01-12 13:50:51,974 | INFO     | did not find any defunct processes belonging to 178484
[2026-01-12 07:51:52] 2026-01-12 13:50:51,974 | INFO     | ready for new job
[2026-01-12 07:51:52] 2026-01-12 13:50:51,974 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 07:51:52] 2026-01-12 13:50:51,975 | INFO     | ***************************************
[2026-01-12 07:51:52] 2026-01-12 13:50:51,976 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 07:51:52] 2026-01-12 13:50:51,976 | INFO     | ***************************************
[2026-01-12 07:51:52] 2026-01-12 13:50:51,976 | INFO     | 
[2026-01-12 07:51:52] 2026-01-12 13:50:51,976 | INFO     | architecture information:
[2026-01-12 07:51:52] 2026-01-12 13:50:51,977 | INFO     | executing command: cat /etc/os-release
[2026-01-12 07:51:52] 2026-01-12 13:50:51,990 | INFO     | cat /etc/os-release:
[2026-01-12 07:51:52] NAME="CentOS Linux"
[2026-01-12 07:51:52] VERSION="7 (Core)"
[2026-01-12 07:51:52] ID="centos"
[2026-01-12 07:51:52] ID_LIKE="rhel fedora"
[2026-01-12 07:51:52] VERSION_ID="7"
[2026-01-12 07:51:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 07:51:52] ANSI_COLOR="0;31"
[2026-01-12 07:51:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 07:51:52] HOME_URL="https://www.centos.org/"
[2026-01-12 07:51:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 07:51:52] 
[2026-01-12 07:51:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 07:51:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 07:51:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 07:51:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 07:51:52] 
[2026-01-12 07:51:52] 2026-01-12 13:50:51,990 | INFO     | ***************************************
[2026-01-12 07:51:52] 2026-01-12 13:50:52,492 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2026-01-12 07:51:52] 2026-01-12 13:50:52,504 | INFO     | sufficient remaining disk space (15731785728 B)
[2026-01-12 07:51:52] 2026-01-12 13:50:52,504 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 07:51:52] 2026-01-12 13:50:52,504 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 07:51:52] 2026-01-12 13:50:52,504 | INFO     | update_server=False
[2026-01-12 07:51:52] 2026-01-12 13:50:52,504 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 07:51:52] 2026-01-12 13:50:52,504 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 07:51:52] 2026-01-12 13:50:52,932 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-12 07:51:52] 2026-01-12 13:50:52,932 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-12 07:51:52] 2026-01-12 13:50:52,932 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 07:51:52] 2026-01-12 13:50:52,932 | INFO     | will abort loop
[2026-01-12 07:51:52] 2026-01-12 13:50:52,949 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 07:51:52] 2026-01-12 13:50:53,101 | INFO     | all data control threads have been joined
[2026-01-12 07:51:52] 2026-01-12 13:50:53,202 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 07:51:52] 2026-01-12 13:50:53,507 | INFO     | [job] retrieve thread has finished
[2026-01-12 07:51:52] 2026-01-12 13:50:53,509 | INFO     | [job] queue monitor thread has finished
[2026-01-12 07:51:52] 2026-01-12 13:50:53,603 | INFO     | [payload] validate_post thread has finished
[2026-01-12 07:51:52] 2026-01-12 13:50:53,718 | INFO     | all job control threads have been joined
[2026-01-12 07:51:52] 2026-01-12 13:50:53,874 | INFO     | all payload control threads have been joined
[2026-01-12 07:51:52] 2026-01-12 13:50:53,938 | INFO     | [job] job monitor thread has finished
[2026-01-12 07:51:52] 2026-01-12 13:50:54,103 | INFO     | [data] control thread has finished
[2026-01-12 07:51:52] 2026-01-12 13:50:54,131 | INFO     | [payload] failed_post thread has finished
[2026-01-12 07:51:52] 2026-01-12 13:50:54,145 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 07:51:52] 2026-01-12 13:50:54,231 | INFO     | [job] validate thread has finished
[2026-01-12 07:51:52] 2026-01-12 13:50:54,234 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 07:51:52] 2026-01-12 13:50:54,267 | INFO     | [data] copytool_in thread has finished
[2026-01-12 07:51:52] 2026-01-12 13:50:54,387 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 07:51:52] 2026-01-12 13:50:54,723 | INFO     | [job] control thread has finished
[2026-01-12 07:51:52] 2026-01-12 13:50:54,880 | INFO     | [payload] control thread has finished
[2026-01-12 07:51:52] 2026-01-12 13:50:54,954 | INFO     | [data] copytool_out thread has finished
[2026-01-12 07:51:52] 2026-01-12 13:50:57,207 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 07:51:52] 2026-01-12 13:51:03,126 | INFO     | job.realtimelogging is not enabled
[2026-01-12 07:51:52] 2026-01-12 13:51:04,132 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 07:51:52] 2026-01-12 13:51:22,817 | INFO     | PID=171890 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-12 07:51:52] 2026-01-12 13:51:22,817 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 07:51:52] 2026-01-12 13:51:22,818 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 07:51:52] 2026-01-12 13:51:22,818 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 07:51:52] 2026-01-12 13:51:46,512 | INFO     | [monitor] cgroup control has ended
[2026-01-12 07:51:52] 2026-01-12 13:51:47,604 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140640436115264)>', '<ExcThread(monitor, started 140639744276224)>']
[2026-01-12 07:51:52] 2026-01-12 13:51:47,935 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 07:51:52] 2026-01-12 13:51:47,935 | INFO     | [monitor] control thread has ended
[2026-01-12 07:51:52] 2026-01-12 13:51:52,627 | INFO     | all workflow threads have been joined
[2026-01-12 07:51:52] 2026-01-12 13:51:52,627 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 07:51:52] 2026-01-12 13:51:52,627 | INFO     | traces error code: 0
[2026-01-12 07:51:52] 2026-01-12 13:51:52,627 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 07:51:52] 2026-01-12 13:51:52,694 [wrapper] ==== pilot stdout END ====
[2026-01-12 07:51:52] 2026-01-12 13:51:52,696 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 07:51:52] 2026-01-12 13:51:52,697 [wrapper] pilotpid: 171890
[2026-01-12 07:51:52] 2026-01-12 13:51:52,699 [wrapper] Pilot exit status: 0
[2026-01-12 07:51:52] 2026-01-12 13:51:52,706 [wrapper] pandaids: 6966954506
[2026-01-12 07:51:52] 2026-01-12 13:51:52,732 [wrapper] cleanup supervisor_pilot  190800 171891
[2026-01-12 07:51:52] 2026-01-12 13:51:52,734 [wrapper] Test setup, not cleaning
[2026-01-12 07:51:52] 2026-01-12 13:51:52,736 [wrapper] apfmon messages muted
[2026-01-12 07:51:52] 2026-01-12 13:51:52,738 [wrapper] ==== wrapper stdout END ====
[2026-01-12 07:51:52] 2026-01-12 13:51:52,740 [wrapper] ==== wrapper stderr END ====
[2026-01-12 07:51:52]  *** Error codes and diagnostics ***
[2026-01-12 07:51:52]     "exeErrorCode": 0,
[2026-01-12 07:51:52]     "exeErrorDiag": "",
[2026-01-12 07:51:52]     "pilotErrorCode": 0,
[2026-01-12 07:51:52]     "pilotErrorDiag": "",
[2026-01-12 07:51:52]  *** Listing of results directory ***
[2026-01-12 07:51:52] total 435916
[2026-01-12 07:51:52] -rw-r--r-- 1 boinc boinc    579449 Jan 12 05:23 pilot3.tar.gz
[2026-01-12 07:51:52] -rwx------ 1 boinc boinc     36322 Jan 12 05:40 runpilot2-wrapper.sh
[2026-01-12 07:51:52] -rw-r--r-- 1 boinc boinc      5112 Jan 12 05:40 queuedata.json
[2026-01-12 07:51:52] -rw-r--r-- 1 boinc boinc       100 Jan 12 07:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 07:51:52] -rwxr-xr-x 1 boinc boinc      7986 Jan 12 07:20 run_atlas
[2026-01-12 07:51:52] -rw-r--r-- 1 boinc boinc       105 Jan 12 07:20 job.xml
[2026-01-12 07:51:52] -rw-r--r-- 1 boinc boinc      6989 Jan 12 07:20 init_data.xml
[2026-01-12 07:51:52] -rw-r--r-- 2 boinc boinc 393484406 Jan 12 07:20 EVNT.47962006._000060.pool.root.1
[2026-01-12 07:51:52] -rw-r--r-- 2 boinc boinc     15847 Jan 12 07:20 start_atlas.sh
[2026-01-12 07:51:52] drwxrwx--x 2 boinc boinc      4096 Jan 12 07:20 shared
[2026-01-12 07:51:52] -rw-r--r-- 2 boinc boinc    592609 Jan 12 07:20 input.tar.gz
[2026-01-12 07:51:52] -rw-r--r-- 1 boinc boinc         0 Jan 12 07:20 boinc_lockfile
[2026-01-12 07:51:52] -rw-r--r-- 1 boinc boinc      2887 Jan 12 07:20 pandaJob.out
[2026-01-12 07:51:52] -rw------- 1 boinc boinc    986112 Jan 12 07:20 agis_schedconf.cvmfs.json
[2026-01-12 07:51:52] -rw------- 1 boinc boinc   1516240 Jan 12 07:20 agis_ddmendpoints.agis.ALL.json
[2026-01-12 07:51:52] drwx------ 5 boinc boinc      4096 Jan 12 07:20 pilot3
[2026-01-12 07:51:52] -rw-r--r-- 1 boinc boinc       529 Jan 12 07:43 boinc_task_state.xml
[2026-01-12 07:51:52] -rw------- 1 boinc boinc  45249082 Jan 12 07:50 HITS.47962010._003217.pool.root.1
[2026-01-12 07:51:52] -rw------- 1 boinc boinc      1036 Jan 12 07:50 memory_monitor_summary.json
[2026-01-12 07:51:52] -rw------- 1 boinc boinc   1563460 Jan 12 07:50 log.47962010._003217.job.log.tgz.1
[2026-01-12 07:51:52] -rw------- 1 boinc boinc      8539 Jan 12 07:50 heartbeat.json
[2026-01-12 07:51:52] -rw------- 1 boinc boinc        95 Jan 12 07:51 pilot_heartbeat.json
[2026-01-12 07:51:52] -rw-r--r-- 1 boinc boinc      8192 Jan 12 07:51 boinc_mmap_file
[2026-01-12 07:51:52] -rw-r--r-- 1 boinc boinc        27 Jan 12 07:51 wrapper_checkpoint.txt
[2026-01-12 07:51:52] -rw------- 1 boinc boinc      5012 Jan 12 07:51 pilotlog.txt
[2026-01-12 07:51:52] -rw------- 1 boinc boinc    303188 Jan 12 07:51 log.47962010._003217.job.log.1
[2026-01-12 07:51:52] -rw------- 1 boinc boinc       353 Jan 12 07:51 output.list
[2026-01-12 07:51:52] -rw-r--r-- 1 boinc boinc       620 Jan 12 07:51 runtime_log
[2026-01-12 07:51:52] -rw------- 1 boinc boinc   1884160 Jan 12 07:51 result.tar.gz
[2026-01-12 07:51:52] -rw------- 1 boinc boinc       639 Jan 12 07:51 TsxLDmETVz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLZnKDmJQza3n.diag
[2026-01-12 07:51:52] -rw-r--r-- 1 boinc boinc      8868 Jan 12 07:51 runtime_log.err
[2026-01-12 07:51:52] -rw-r--r-- 1 boinc boinc     22579 Jan 12 07:51 stderr.txt
[2026-01-12 07:51:52] HITS file was successfully produced:
[2026-01-12 07:51:52] -rw------- 1 boinc boinc 45249082 Jan 12 07:50 shared/HITS.pool.root.1
[2026-01-12 07:51:52]  *** Contents of shared directory: ***
[2026-01-12 07:51:52] total 430896
[2026-01-12 07:51:52] -rw-r--r-- 2 boinc boinc 393484406 Jan 12 07:20 ATLAS.root_0
[2026-01-12 07:51:52] -rw-r--r-- 2 boinc boinc     15847 Jan 12 07:20 start_atlas.sh
[2026-01-12 07:51:52] -rw-r--r-- 2 boinc boinc    592609 Jan 12 07:20 input.tar.gz
[2026-01-12 07:51:52] -rw------- 1 boinc boinc  45249082 Jan 12 07:50 HITS.pool.root.1
[2026-01-12 07:51:52] -rw------- 1 boinc boinc   1884160 Jan 12 07:51 result.tar.gz
07:51:54 (168094): run_atlas exited; CPU time 16389.345901
07:51:54 (168094): called boinc_finish(0)

</stderr_txt>
]]>

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