Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:57:06 (972506): wrapper (7.7.26015): starting
11:57:06 (972506): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 11:57:06] Arguments: --nthreads 8
[2026-01-12 11:57:06] Threads: 8
[2026-01-12 11:57:06] Checking for CVMFS
[2026-01-12 11:57:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 11:57:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 11:57:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 11:57:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 11:57:07] 2.13.3.0 5581 25948 172264 155059 1 193 37686082 39288833 5103 16776704 0 11344401 99.565 15329489 41371 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 11:57:07] CVMFS is ok
[2026-01-12 11:57:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 11:57:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 11:57:07] Further information can be found at the LHC@home message board.
[2026-01-12 11:57:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 11:57:07] Checking for apptainer binary...
[2026-01-12 11:57:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 11:57:07] Running /usr/bin/apptainer --version
[2026-01-12 11:57:07] apptainer version 1.4.5-2.el9
[2026-01-12 11:57:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 11:57:08] c-210-5.aglt2.org
[2026-01-12 11:57:08] apptainer works
[2026-01-12 11:57:08] Set ATHENA_PROC_NUMBER=8
[2026-01-12 11:57:08] Set ATHENA_CORE_NUMBER=8
[2026-01-12 11:57:08] Starting ATLAS job with PandaID=6962919544
[2026-01-12 11:57:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 12:00:39]  *** The last 200 lines of the pilot log: ***
[2026-01-13 12:00:39] 2026-01-13 12:42:53,506 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 12:00:39] 2026-01-13 12:42:53,507 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 12:00:39] 2026-01-13 12:42:53,507 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 12:00:39] 2026-01-13 12:42:53,507 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 12:00:39] 2026-01-13 12:42:53,691 | INFO     | fitting pss+swap vs Time
[2026-01-13 12:00:39] 2026-01-13 12:42:53,725 | INFO     | sum of square deviations: 487765921973.9021
[2026-01-13 12:00:39] 2026-01-13 12:42:54,029 | INFO     | sum of deviations: 79800634045.40842
[2026-01-13 12:00:39] 2026-01-13 12:42:54,050 | INFO     | mean x: 1768272638.0662081
[2026-01-13 12:00:39] 2026-01-13 12:42:54,050 | INFO     | mean y: 2530333.890799656
[2026-01-13 12:00:39] 2026-01-13 12:42:54,051 | INFO     | intersect: -286766788.6137538
[2026-01-13 12:00:39] 2026-01-13 12:42:54,052 | INFO     | chi2: 5.078861577145052
[2026-01-13 12:00:39] 2026-01-13 12:42:54,054 | INFO     | sum of square deviations: 481501819552.38403
[2026-01-13 12:00:39] 2026-01-13 12:42:54,416 | INFO     | sum of deviations: 302680236556.0024
[2026-01-13 12:00:39] 2026-01-13 12:42:54,416 | INFO     | mean x: 1768272485.566494
[2026-01-13 12:00:39] 2026-01-13 12:42:54,417 | INFO     | mean y: 2535750.675302245
[2026-01-13 12:00:39] 2026-01-13 12:42:54,417 | INFO     | intersect: -1109030421.0253394
[2026-01-13 12:00:39] 2026-01-13 12:42:54,418 | INFO     | chi2: 3.0088584673516228
[2026-01-13 12:00:39] 2026-01-13 12:42:54,419 | INFO     | current chi2=3.0088584673516228 (change=40.757226365618465 %)
[2026-01-13 12:00:39] 2026-01-13 12:42:54,457 | INFO     | sum of square deviations: 475291578001.85754
[2026-01-13 12:00:39] 2026-01-13 12:42:54,530 | INFO     | time since job start (71120s) is within the limit (174528.0s)
[2026-01-13 12:00:39] 2026-01-13 12:42:54,809 | INFO     | sum of deviations: 302780303755.7828
[2026-01-13 12:00:39] 2026-01-13 12:42:54,809 | INFO     | mean x: 1768272333.0667822
[2026-01-13 12:00:39] 2026-01-13 12:42:54,810 | INFO     | mean y: 2535753.132697311
[2026-01-13 12:00:39] 2026-01-13 12:42:54,810 | INFO     | intersect: -1123926525.8324363
[2026-01-13 12:00:39] 2026-01-13 12:42:54,833 | INFO     | chi2: 3.008898066754642
[2026-01-13 12:00:39] 2026-01-13 12:42:54,833 | INFO     | current chi2=3.008898066754642 (change=-0.0013160939090031884 %)
[2026-01-13 12:00:39] 2026-01-13 12:42:54,833 | INFO     | right removable region: 1152
[2026-01-13 12:00:39] 2026-01-13 12:42:54,862 | INFO     | sum of square deviations: 481501487715.8363
[2026-01-13 12:00:39] 2026-01-13 12:42:55,242 | INFO     | sum of deviations: -240478794951.0984
[2026-01-13 12:00:39] 2026-01-13 12:42:55,242 | INFO     | mean x: 1768272790.5699482
[2026-01-13 12:00:39] 2026-01-13 12:42:55,242 | INFO     | mean y: 2538126.6925734025
[2026-01-13 12:00:39] 2026-01-13 12:42:55,242 | INFO     | intersect: 885675813.0127304
[2026-01-13 12:00:39] 2026-01-13 12:42:55,272 | INFO     | chi2: 2.376610636787335
[2026-01-13 12:00:39] 2026-01-13 12:42:55,272 | INFO     | current chi2=2.376610636787335 (change=53.205839523524 %)
[2026-01-13 12:00:39] 2026-01-13 12:42:55,274 | INFO     | sum of square deviations: 475290844537.5856
[2026-01-13 12:00:39] 2026-01-13 12:42:55,380 | INFO     | monitor loop #4189: job 0:6962919544 is in state 'finished'
[2026-01-13 12:00:39] 2026-01-13 12:42:55,380 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 12:00:39] 2026-01-13 12:42:55,611 | INFO     | sum of deviations: -298317041300.75977
[2026-01-13 12:00:39] 2026-01-13 12:42:55,611 | INFO     | mean x: 1768272943.074588
[2026-01-13 12:00:39] 2026-01-13 12:42:55,611 | INFO     | mean y: 2539543.0320901996
[2026-01-13 12:00:39] 2026-01-13 12:42:55,611 | INFO     | intersect: 1112398818.9948175
[2026-01-13 12:00:39] 2026-01-13 12:42:55,645 | INFO     | chi2: 2.1649810486079364
[2026-01-13 12:00:39] 2026-01-13 12:42:55,645 | INFO     | current chi2=2.1649810486079364 (change=8.90468067859346 %)
[2026-01-13 12:00:39] 2026-01-13 12:42:55,646 | INFO     | left removable region: 20
[2026-01-13 12:00:39] 2026-01-13 12:42:55,647 | INFO     | sum of square deviations: 449790374199.5248
[2026-01-13 12:00:39] 2026-01-13 12:42:55,923 | INFO     | sum of deviations: -111174683428.50046
[2026-01-13 12:00:39] 2026-01-13 12:42:55,924 | INFO     | mean x: 1768272912.5812721
[2026-01-13 12:00:39] 2026-01-13 12:42:55,924 | INFO     | mean y: 2546048.25
[2026-01-13 12:00:39] 2026-01-13 12:42:55,924 | INFO     | intersect: 439610050.8340355
[2026-01-13 12:00:39] 2026-01-13 12:42:55,930 | INFO     | chi2: 0.022431073643488543
[2026-01-13 12:00:39] 2026-01-13 12:42:55,930 | INFO     | current memory leak: -0.25 B/s (using 1132 data points, chi2=0.02)
[2026-01-13 12:00:39] 2026-01-13 12:42:55,932 | INFO     | could have reported an average CPU frequency of 2599 MHz (42 samples)
[2026-01-13 12:00:39] 2026-01-13 12:42:55,932 | INFO     | ..............................
[2026-01-13 12:00:39] 2026-01-13 12:42:55,932 | INFO     | . Timing measurements:
[2026-01-13 12:00:39] 2026-01-13 12:42:55,932 | INFO     | . get job = 0 s
[2026-01-13 12:00:39] 2026-01-13 12:42:55,932 | INFO     | . initial setup = 3 s
[2026-01-13 12:00:39] 2026-01-13 12:42:55,932 | INFO     | . payload setup = 45 s
[2026-01-13 12:00:39] 2026-01-13 12:42:55,932 | INFO     | . stage-in = 0 s
[2026-01-13 12:00:39] 2026-01-13 12:42:55,933 | INFO     | . payload execution = 70941 s
[2026-01-13 12:00:39] 2026-01-13 12:42:55,933 | INFO     | . stage-out = 7 s
[2026-01-13 12:00:39] 2026-01-13 12:42:55,933 | INFO     | . log creation = 1 s
[2026-01-13 12:00:39] 2026-01-13 12:42:55,933 | INFO     | ..............................
[2026-01-13 12:00:39] 2026-01-13 12:42:56,633 | INFO     | time since job start (71122s) is within the limit (174528.0s)
[2026-01-13 12:00:39] 2026-01-13 12:42:56,801 | INFO     | 
[2026-01-13 12:00:39] 2026-01-13 12:42:56,801 | INFO     | job summary report
[2026-01-13 12:00:39] 2026-01-13 12:42:56,801 | INFO     | --------------------------------------------------
[2026-01-13 12:00:39] 2026-01-13 12:42:56,801 | INFO     | PanDA job id: 6962919544
[2026-01-13 12:00:39] 2026-01-13 12:42:56,801 | INFO     | task id: 47898826
[2026-01-13 12:00:39] 2026-01-13 12:42:56,801 | INFO     | errors: (none)
[2026-01-13 12:00:39] 2026-01-13 12:42:56,801 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 12:00:39] 2026-01-13 12:42:56,802 | INFO     | pilot state: finished 
[2026-01-13 12:00:39] 2026-01-13 12:42:56,802 | INFO     | transexitcode: 0
[2026-01-13 12:00:39] 2026-01-13 12:42:56,802 | INFO     | exeerrorcode: 0
[2026-01-13 12:00:39] 2026-01-13 12:42:56,802 | INFO     | exeerrordiag: 
[2026-01-13 12:00:39] 2026-01-13 12:42:56,802 | INFO     | exitcode: 0
[2026-01-13 12:00:39] 2026-01-13 12:42:56,802 | INFO     | exitmsg: OK
[2026-01-13 12:00:39] 2026-01-13 12:42:56,802 | INFO     | cpuconsumptiontime: 68533 s
[2026-01-13 12:00:39] 2026-01-13 12:42:56,802 | INFO     | nevents: 400
[2026-01-13 12:00:39] 2026-01-13 12:42:56,802 | INFO     | neventsw: 0
[2026-01-13 12:00:39] 2026-01-13 12:42:56,803 | INFO     | pid: 983456
[2026-01-13 12:00:39] 2026-01-13 12:42:56,803 | INFO     | pgrp: 983456
[2026-01-13 12:00:39] 2026-01-13 12:42:56,803 | INFO     | corecount: 8
[2026-01-13 12:00:39] 2026-01-13 12:42:56,803 | INFO     | event service: False
[2026-01-13 12:00:39] 2026-01-13 12:42:56,803 | INFO     | sizes: {0: 2283798, 1: 2283997, 12: 2283997, 23: 2284025, 28: 2284315, 34: 2284343, 70993: 2341640, 70994: 2341639, 71002: 2350749, 71056: 2350887}
[2026-01-13 12:00:39] 2026-01-13 12:42:56,803 | INFO     | --------------------------------------------------
[2026-01-13 12:00:39] 2026-01-13 12:42:56,803 | INFO     | 
[2026-01-13 12:00:39] 2026-01-13 12:42:56,803 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-13 12:00:39] 2026-01-13 12:42:57,075 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,076 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,076 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,076 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,076 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,076 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,076 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,077 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,077 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,077 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,077 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,077 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,099 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,099 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,100 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,100 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,100 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,100 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 12:00:39] 2026-01-13 12:42:57,100 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,100 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 12:00:39] 2026-01-13 12:42:57,100 | INFO     | job 6962919544 has completed (purged errors)
[2026-01-13 12:00:39] 2026-01-13 12:42:57,100 | INFO     | overall cleanup function is called
[2026-01-13 12:00:39] 2026-01-13 12:42:58,161 | INFO     | --- collectZombieJob: --- 10, [983456]
[2026-01-13 12:00:39] 2026-01-13 12:42:58,161 | INFO     | zombie collector waiting for pid 983456
[2026-01-13 12:00:39] 2026-01-13 12:42:58,161 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 12:00:39] 2026-01-13 12:42:58,162 | INFO     | collected zombie processes
[2026-01-13 12:00:39] 2026-01-13 12:42:58,162 | INFO     | will attempt to kill all subprocesses of pid=983456
[2026-01-13 12:00:39] 2026-01-13 12:42:59,248 | INFO     | PID=976187 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-13 12:00:39] 2026-01-13 12:42:59,251 | INFO     | .. there are 8 such processes running
[2026-01-13 12:00:39] 2026-01-13 12:43:01,002 | INFO     | process IDs to be killed: [983456] (in reverse order)
[2026-01-13 12:00:39] 2026-01-13 12:43:01,353 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 12:00:39] 2026-01-13 12:43:01,354 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 12:00:39] 2026-01-13 12:43:01,365 | INFO     | did not find any defunct processes belonging to 983456
[2026-01-13 12:00:39] 2026-01-13 12:43:01,376 | INFO     | did not find any defunct processes belonging to 983456
[2026-01-13 12:00:39] 2026-01-13 12:43:01,377 | INFO     | ready for new job
[2026-01-13 12:00:39] 2026-01-13 12:43:01,377 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 12:00:39] 2026-01-13 12:43:01,384 | INFO     | ***************************************
[2026-01-13 12:00:39] 2026-01-13 12:43:01,384 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 12:00:39] 2026-01-13 12:43:01,384 | INFO     | ***************************************
[2026-01-13 12:00:39] 2026-01-13 12:43:01,384 | INFO     | 
[2026-01-13 12:00:39] 2026-01-13 12:43:01,388 | INFO     | architecture information:
[2026-01-13 12:00:39] 2026-01-13 12:43:01,388 | INFO     | executing command: cat /etc/os-release
[2026-01-13 12:00:39] 2026-01-13 12:43:01,410 | INFO     | cat /etc/os-release:
[2026-01-13 12:00:39] NAME="CentOS Linux"
[2026-01-13 12:00:39] VERSION="7 (Core)"
[2026-01-13 12:00:39] ID="centos"
[2026-01-13 12:00:39] ID_LIKE="rhel fedora"
[2026-01-13 12:00:39] VERSION_ID="7"
[2026-01-13 12:00:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 12:00:39] ANSI_COLOR="0;31"
[2026-01-13 12:00:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 12:00:39] HOME_URL="https://www.centos.org/"
[2026-01-13 12:00:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 12:00:39] 
[2026-01-13 12:00:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 12:00:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 12:00:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 12:00:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 12:00:39] 
[2026-01-13 12:00:39] 2026-01-13 12:43:01,411 | INFO     | ***************************************
[2026-01-13 12:00:39] 2026-01-13 12:43:01,914 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-13 12:00:39] 2026-01-13 12:43:02,010 | INFO     | sufficient remaining disk space (51185188864 B)
[2026-01-13 12:00:39] 2026-01-13 12:43:02,011 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 12:00:39] 2026-01-13 12:43:02,011 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 12:00:39] 2026-01-13 12:43:02,011 | INFO     | update_server=False
[2026-01-13 12:00:39] 2026-01-13 12:43:02,011 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 12:00:39] 2026-01-13 12:43:02,012 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 12:00:39] 2026-01-13 12:43:02,012 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 12:00:39] 2026-01-13 12:43:02,012 | INFO     | aborting loop
[2026-01-13 12:00:39] 2026-01-13 12:43:02,373 | INFO     | all data control threads have been joined
[2026-01-13 12:00:39] 2026-01-13 12:43:02,806 | INFO     | all payload control threads have been joined
[2026-01-13 12:00:39] 2026-01-13 12:43:03,019 | INFO     | [job] retrieve thread has finished
[2026-01-13 12:00:39] 2026-01-13 12:43:03,020 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 12:00:39] 2026-01-13 12:43:03,020 | INFO     | [job] queue monitor thread has finished
[2026-01-13 12:00:39] 2026-01-13 12:43:03,038 | INFO     | [job] job monitor thread has finished
[2026-01-13 12:00:39] 2026-01-13 12:43:03,392 | INFO     | [data] control thread has finished
[2026-01-13 12:00:39] 2026-01-13 12:43:03,484 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 12:00:39] 2026-01-13 12:43:03,490 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 12:00:39] 2026-01-13 12:43:03,538 | INFO     | [data] copytool_in thread has finished
[2026-01-13 12:00:39] 2026-01-13 12:43:03,623 | INFO     | all job control threads have been joined
[2026-01-13 12:00:39] 2026-01-13 12:43:03,812 | INFO     | [payload] control thread has finished
[2026-01-13 12:00:39] 2026-01-13 12:43:03,983 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 12:00:39] 2026-01-13 12:43:04,005 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 12:00:39] 2026-01-13 12:43:04,006 | INFO     | [job] validate thread has finished
[2026-01-13 12:00:39] 2026-01-13 12:43:04,243 | INFO     | [payload] failed_post thread has finished
[2026-01-13 12:00:39] 2026-01-13 12:43:04,255 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 12:00:39] 2026-01-13 12:43:04,369 | INFO     | [payload] validate_post thread has finished
[2026-01-13 12:00:39] 2026-01-13 12:43:04,629 | INFO     | [job] control thread has finished
[2026-01-13 12:00:39] 2026-01-13 12:43:05,497 | INFO     | [data] copytool_out thread has finished
[2026-01-13 12:00:39] 2026-01-13 12:43:07,493 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 12:00:39] 2026-01-13 12:43:33,009 | INFO     | PID=976187 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-13 12:00:39] 2026-01-13 12:43:33,009 | INFO     | .. there are 8 such processes running
[2026-01-13 12:00:39] 2026-01-13 12:43:33,015 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 12:00:39] 2026-01-13 12:43:33,015 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 12:00:39] 2026-01-13 12:43:33,015 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 12:00:39] 2026-01-13 12:43:48,917 | INFO     | [monitor] cgroup control has ended
[2026-01-13 12:00:39] 2026-01-13 12:43:48,939 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139851685533504)>', '<ExcThread(monitor, started 139851240302336)>']
[2026-01-13 12:00:39] 2026-01-13 12:43:49,221 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 12:00:39] 2026-01-13 12:43:49,221 | INFO     | [monitor] control thread has ended
[2026-01-13 12:00:39] 2026-01-13 12:43:53,965 | INFO     | all workflow threads have been joined
[2026-01-13 12:00:39] 2026-01-13 12:43:53,969 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 12:00:39] 2026-01-13 12:43:53,969 | INFO     | traces error code: 0
[2026-01-13 12:00:39] 2026-01-13 12:43:53,970 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 12:00:39] 2026-01-13 12:43:56,352 [wrapper] ==== pilot stdout END ====
[2026-01-13 12:00:39] 2026-01-13 12:43:56,516 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 12:00:39] 2026-01-13 12:43:56,548 [wrapper] pilotpid: 976187
[2026-01-13 12:00:39] 2026-01-13 12:43:56,854 [wrapper] Pilot exit status: 0
[2026-01-13 12:00:39] 2026-01-13 12:43:57,442 [wrapper] pandaids: 6962919544
[2026-01-13 12:00:39] 2026-01-13 12:43:58,225 [wrapper] cleanup supervisor_pilot 2801233 976188
[2026-01-13 12:00:39] 2026-01-13 12:43:58,297 [wrapper] Test setup, not cleaning
[2026-01-13 12:00:39] 2026-01-13 12:43:58,319 [wrapper] apfmon messages muted
[2026-01-13 12:00:39] 2026-01-13 12:43:58,345 [wrapper] ==== wrapper stdout END ====
[2026-01-13 12:00:39] 2026-01-13 12:43:58,401 [wrapper] ==== wrapper stderr END ====
[2026-01-13 12:00:39]  *** Error codes and diagnostics ***
[2026-01-13 12:00:39]     "exeErrorCode": 0,
[2026-01-13 12:00:39]     "exeErrorDiag": "",
[2026-01-13 12:00:39]     "pilotErrorCode": 0,
[2026-01-13 12:00:39]     "pilotErrorDiag": "",
[2026-01-13 12:00:39]  *** Listing of results directory ***
[2026-01-13 12:00:40] total 452956
[2026-01-13 12:00:40] -rwx------. 1 boincer umatlas     36322 Jan  8 03:07 runpilot2-wrapper.sh
[2026-01-13 12:00:40] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 03:11 queuedata.json
[2026-01-13 12:00:40] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 03:11 pilot3.tar.gz
[2026-01-13 12:00:40] -rw-r--r--. 1 boincer umatlas       100 Jan 12 11:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 12:00:40] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 12 11:57 run_atlas
[2026-01-13 12:00:40] -rw-r--r--. 1 boincer umatlas       105 Jan 12 11:57 job.xml
[2026-01-13 12:00:40] -rw-r--r--. 2 boincer umatlas 222291242 Jan 12 11:57 EVNT.47898824._000336.pool.root.1
[2026-01-13 12:00:40] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 11:57 start_atlas.sh
[2026-01-13 12:00:40] drwxrwx--x. 2 boincer umatlas      4096 Jan 12 11:57 shared
[2026-01-13 12:00:40] -rw-r--r--. 2 boincer umatlas    592395 Jan 12 11:57 input.tar.gz
[2026-01-13 12:00:40] -rw-r--r--. 1 boincer umatlas         0 Jan 12 11:57 boinc_lockfile
[2026-01-13 12:00:40] -rw-r--r--. 1 boincer umatlas      2519 Jan 12 11:57 pandaJob.out
[2026-01-13 12:00:40] -rw-------. 1 boincer umatlas        57 Jan 12 11:57 setup.sh.local
[2026-01-13 12:00:40] -rw-------. 1 boincer umatlas    988542 Jan 12 11:57 agis_schedconf.cvmfs.json
[2026-01-13 12:00:40] drwx------. 5 boincer umatlas      4096 Jan 12 11:57 pilot3
[2026-01-13 12:00:40] -rw-------. 1 boincer umatlas 217853242 Jan 13 07:37 HITS.47898826._021334.pool.root.1
[2026-01-13 12:00:40] -rw-r--r--. 1 boincer umatlas       531 Jan 13 07:38 boinc_task_state.xml
[2026-01-13 12:00:40] -rw-------. 1 boincer umatlas      1039 Jan 13 07:41 memory_monitor_summary.json
[2026-01-13 12:00:40] -rw-------. 1 boincer umatlas   1516240 Jan 13 07:41 agis_ddmendpoints.agis.ALL.json
[2026-01-13 12:00:40] -rw-------. 1 boincer umatlas   1162271 Jan 13 07:42 log.47898826._021334.job.log.tgz.1
[2026-01-13 12:00:40] -rw-------. 1 boincer umatlas      7818 Jan 13 07:42 heartbeat.json
[2026-01-13 12:00:40] -rw-------. 1 boincer umatlas        95 Jan 13 07:43 pilot_heartbeat.json
[2026-01-13 12:00:40] -rw-------. 1 boincer umatlas      4822 Jan 13 07:43 pilotlog.txt
[2026-01-13 12:00:40] -rw-------. 1 boincer umatlas   8720966 Jan 13 07:43 log.47898826._021334.job.log.1
[2026-01-13 12:00:40] -rw-------. 1 boincer umatlas       357 Jan 13 07:43 output.list
[2026-01-13 12:00:40] -rw-r--r--. 1 boincer umatlas       620 Jan 13 07:43 runtime_log
[2026-01-13 12:00:40] -rw-------. 1 boincer umatlas   9902080 Jan 13 07:43 result.tar.gz
[2026-01-13 12:00:40] -rw-------. 1 boincer umatlas       657 Jan 13 07:43 RYQKDmLE0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpjeKDmL8e7mn.diag
[2026-01-13 12:00:40] -rw-r--r--. 1 boincer umatlas      9338 Jan 13 07:43 runtime_log.err
[2026-01-13 12:00:40] -rw-r--r--. 1 boincer umatlas      6660 Jan 13 12:00 init_data.xml
[2026-01-13 12:00:40] -rw-r--r--. 1 boincer umatlas      8192 Jan 13 12:00 boinc_mmap_file
[2026-01-13 12:00:40] -rw-r--r--. 1 boincer umatlas        28 Jan 13 12:00 wrapper_checkpoint.txt
[2026-01-13 12:00:40] -rw-r--r--. 1 boincer umatlas     21273 Jan 13 12:00 stderr.txt
[2026-01-13 12:00:40] HITS file was successfully produced:
[2026-01-13 12:00:40] -rw-------. 1 boincer umatlas 217853242 Jan 13 07:37 shared/HITS.pool.root.1
[2026-01-13 12:00:40]  *** Contents of shared directory: ***
[2026-01-13 12:00:40] total 440104
[2026-01-13 12:00:40] -rw-r--r--. 2 boincer umatlas 222291242 Jan 12 11:57 ATLAS.root_0
[2026-01-13 12:00:40] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 11:57 start_atlas.sh
[2026-01-13 12:00:40] -rw-r--r--. 2 boincer umatlas    592395 Jan 12 11:57 input.tar.gz
[2026-01-13 12:00:40] -rw-------. 1 boincer umatlas 217853242 Jan 13 07:37 HITS.pool.root.1
[2026-01-13 12:00:40] -rw-------. 1 boincer umatlas   9902080 Jan 13 07:43 result.tar.gz
12:00:41 (972506): run_atlas exited; CPU time 70525.118151
12:00:41 (972506): called boinc_finish(0)

</stderr_txt>
]]>

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