Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:00:30 (203818): wrapper (7.7.26015): starting
08:00:30 (203818): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 08:00:30] Arguments: --nthreads 8
[2026-01-12 08:00:30] Threads: 8
[2026-01-12 08:00:30] Checking for CVMFS
[2026-01-12 08:00:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 08:00:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 08:00:30] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 08:00:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 08:00:31] 2.13.3.0 6454 26546 256800 155053 0 374 36434747 40960001 13892 16776704 0 30557513 99.776 28242664 33988 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 08:00:31] CVMFS is ok
[2026-01-12 08:00:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 08:00:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 08:00:31] Further information can be found at the LHC@home message board.
[2026-01-12 08:00:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 08:00:31] Checking for apptainer binary...
[2026-01-12 08:00:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 08:00:31] Running /usr/bin/apptainer --version
[2026-01-12 08:00:31] apptainer version 1.4.5-2.el9
[2026-01-12 08:00:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 08:00:31] c-206-40.aglt2.org
[2026-01-12 08:00:31] apptainer works
[2026-01-12 08:00:31] Set ATHENA_PROC_NUMBER=8
[2026-01-12 08:00:31] Set ATHENA_CORE_NUMBER=8
[2026-01-12 08:00:31] Starting ATLAS job with PandaID=6966869533
[2026-01-12 08:00:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 09:02:23]  *** The last 200 lines of the pilot log: ***
[2026-01-13 09:02:23] 2026-01-13 13:58:19,106 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 09:02:23] 2026-01-13 13:58:19,435 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-13 09:02:23] 2026-01-13 13:58:19,465 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3284.717874999999
[2026-01-13 09:02:23] 2026-01-13 13:58:19,539 | INFO     | time since job start (89825s) is within the limit (349056.0s)
[2026-01-13 09:02:23] 2026-01-13 13:58:19,560 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6966869533/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 09:02:23] 2026-01-13 13:58:19,560 | INFO     | extracted standard info from prmon json
[2026-01-13 09:02:23] 2026-01-13 13:58:19,560 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 09:02:23] 2026-01-13 13:58:19,561 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 09:02:23] 2026-01-13 13:58:19,648 | INFO     | fitting pss+swap vs Time
[2026-01-13 09:02:23] 2026-01-13 13:58:19,650 | INFO     | sum of square deviations: 987034890099.2688
[2026-01-13 09:02:23] 2026-01-13 13:58:19,702 | INFO     | sum of deviations: 6444619447754.094
[2026-01-13 09:02:23] 2026-01-13 13:58:19,703 | INFO     | mean x: 1768267807.5921142
[2026-01-13 09:02:23] 2026-01-13 13:58:19,703 | INFO     | mean y: 3437260.9734874237
[2026-01-13 09:02:23] 2026-01-13 13:58:19,703 | INFO     | intersect: -11542064540.385859
[2026-01-13 09:02:23] 2026-01-13 13:58:19,704 | INFO     | chi2: 10.643846613957397
[2026-01-13 09:02:23] 2026-01-13 13:58:19,706 | INFO     | sum of square deviations: 977005660313.0587
[2026-01-13 09:02:23] 2026-01-13 13:58:19,749 | INFO     | sum of deviations: 6964137634952.955
[2026-01-13 09:02:23] 2026-01-13 13:58:19,749 | INFO     | mean x: 1768267655.100955
[2026-01-13 09:02:23] 2026-01-13 13:58:19,749 | INFO     | mean y: 3445157.8990450203
[2026-01-13 09:02:23] 2026-01-13 13:58:19,750 | INFO     | intersect: -12600841414.619572
[2026-01-13 09:02:23] 2026-01-13 13:58:19,751 | INFO     | chi2: 8.117212100626677
[2026-01-13 09:02:23] 2026-01-13 13:58:19,751 | INFO     | current chi2=8.117212100626677 (change=23.737983127429846 %)
[2026-01-13 09:02:23] 2026-01-13 13:58:19,751 | INFO     | right removable region: 1465
[2026-01-13 09:02:23] 2026-01-13 13:58:19,752 | INFO     | sum of square deviations: 977003334383.0598
[2026-01-13 09:02:23] 2026-01-13 13:58:19,796 | INFO     | sum of deviations: 5771555890648.581
[2026-01-13 09:02:23] 2026-01-13 13:58:19,797 | INFO     | mean x: 1768267960.100955
[2026-01-13 09:02:23] 2026-01-13 13:58:19,797 | INFO     | mean y: 3447491.5839017737
[2026-01-13 09:02:23] 2026-01-13 13:58:19,797 | INFO     | intersect: -10442430226.745789
[2026-01-13 09:02:23] 2026-01-13 13:58:19,798 | INFO     | chi2: 6.814688299410079
[2026-01-13 09:02:23] 2026-01-13 13:58:19,798 | INFO     | current chi2=6.814688299410079 (change=35.975324085618624 %)
[2026-01-13 09:02:23] 2026-01-13 13:58:19,800 | INFO     | sum of square deviations: 967039965991.6185
[2026-01-13 09:02:23] 2026-01-13 13:58:19,842 | INFO     | sum of deviations: 5170507319629.6045
[2026-01-13 09:02:23] 2026-01-13 13:58:19,842 | INFO     | mean x: 1768268112.6098564
[2026-01-13 09:02:23] 2026-01-13 13:58:19,842 | INFO     | mean y: 3456689.9712525667
[2026-01-13 09:02:23] 2026-01-13 13:58:19,842 | INFO     | intersect: -9451005939.131845
[2026-01-13 09:02:23] 2026-01-13 13:58:19,844 | INFO     | chi2: 3.862668683502091
[2026-01-13 09:02:23] 2026-01-13 13:58:19,844 | INFO     | current chi2=3.862668683502091 (change=43.31848334374344 %)
[2026-01-13 09:02:23] 2026-01-13 13:58:19,845 | INFO     | sum of square deviations: 957144730246.9148
[2026-01-13 09:02:23] 2026-01-13 13:58:19,890 | INFO     | sum of deviations: 4896306313674.663
[2026-01-13 09:02:23] 2026-01-13 13:58:19,890 | INFO     | mean x: 1768268265.117445
[2026-01-13 09:02:23] 2026-01-13 13:58:19,890 | INFO     | mean y: 3460912.481456044
[2026-01-13 09:02:23] 2026-01-13 13:58:19,890 | INFO     | intersect: -9042175339.970758
[2026-01-13 09:02:23] 2026-01-13 13:58:19,891 | INFO     | chi2: 3.2306218473617863
[2026-01-13 09:02:23] 2026-01-13 13:58:19,892 | INFO     | current chi2=3.2306218473617863 (change=16.36295752829775 %)
[2026-01-13 09:02:23] 2026-01-13 13:58:19,892 | INFO     | left removable region: 30
[2026-01-13 09:02:23] 2026-01-13 13:58:19,893 | INFO     | sum of square deviations: 916327044049.029
[2026-01-13 09:02:23] 2026-01-13 13:58:19,936 | INFO     | sum of deviations: 5114857024744.457
[2026-01-13 09:02:23] 2026-01-13 13:58:19,936 | INFO     | mean x: 1768268539.6285715
[2026-01-13 09:02:23] 2026-01-13 13:58:19,936 | INFO     | mean y: 3474920.593728223
[2026-01-13 09:02:23] 2026-01-13 13:58:19,937 | INFO     | intersect: -9866844656.124874
[2026-01-13 09:02:23] 2026-01-13 13:58:19,938 | INFO     | chi2: 0.4693061489613832
[2026-01-13 09:02:23] 2026-01-13 13:58:19,938 | INFO     | current memory leak: 5.58 B/s (using 1435 data points, chi2=0.47)
[2026-01-13 09:02:23] 2026-01-13 13:58:19,939 | INFO     | could have reported an average CPU frequency of 3286 MHz (53 samples)
[2026-01-13 09:02:23] 2026-01-13 13:58:19,939 | INFO     | ..............................
[2026-01-13 09:02:23] 2026-01-13 13:58:19,940 | INFO     | . Timing measurements:
[2026-01-13 09:02:23] 2026-01-13 13:58:19,940 | INFO     | . get job = 0 s
[2026-01-13 09:02:23] 2026-01-13 13:58:19,940 | INFO     | . initial setup = 3 s
[2026-01-13 09:02:23] 2026-01-13 13:58:19,940 | INFO     | . payload setup = 48 s
[2026-01-13 09:02:23] 2026-01-13 13:58:19,940 | INFO     | . stage-in = 0 s
[2026-01-13 09:02:23] 2026-01-13 13:58:19,940 | INFO     | . payload execution = 89722 s
[2026-01-13 09:02:23] 2026-01-13 13:58:19,940 | INFO     | . stage-out = 6 s
[2026-01-13 09:02:23] 2026-01-13 13:58:19,940 | INFO     | . log creation = 2 s
[2026-01-13 09:02:23] 2026-01-13 13:58:19,940 | INFO     | ..............................
[2026-01-13 09:02:23] 2026-01-13 13:58:20,172 | INFO     | 
[2026-01-13 09:02:23] 2026-01-13 13:58:20,174 | INFO     | job summary report
[2026-01-13 09:02:23] 2026-01-13 13:58:20,174 | INFO     | --------------------------------------------------
[2026-01-13 09:02:23] 2026-01-13 13:58:20,174 | INFO     | PanDA job id: 6966869533
[2026-01-13 09:02:23] 2026-01-13 13:58:20,174 | INFO     | task id: 48187943
[2026-01-13 09:02:23] 2026-01-13 13:58:20,174 | INFO     | errors: (none)
[2026-01-13 09:02:23] 2026-01-13 13:58:20,174 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 09:02:23] 2026-01-13 13:58:20,174 | INFO     | pilot state: finished 
[2026-01-13 09:02:23] 2026-01-13 13:58:20,174 | INFO     | transexitcode: 0
[2026-01-13 09:02:23] 2026-01-13 13:58:20,174 | INFO     | exeerrorcode: 0
[2026-01-13 09:02:23] 2026-01-13 13:58:20,174 | INFO     | exeerrordiag: 
[2026-01-13 09:02:23] 2026-01-13 13:58:20,174 | INFO     | exitcode: 0
[2026-01-13 09:02:23] 2026-01-13 13:58:20,174 | INFO     | exitmsg: OK
[2026-01-13 09:02:23] 2026-01-13 13:58:20,175 | INFO     | cpuconsumptiontime: 235542 s
[2026-01-13 09:02:23] 2026-01-13 13:58:20,175 | INFO     | nevents: 2050
[2026-01-13 09:02:23] 2026-01-13 13:58:20,175 | INFO     | neventsw: 0
[2026-01-13 09:02:23] 2026-01-13 13:58:20,175 | INFO     | pid: 215929
[2026-01-13 09:02:23] 2026-01-13 13:58:20,175 | INFO     | pgrp: 215929
[2026-01-13 09:02:23] 2026-01-13 13:58:20,175 | INFO     | corecount: 8
[2026-01-13 09:02:23] 2026-01-13 13:58:20,175 | INFO     | event service: False
[2026-01-13 09:02:23] 2026-01-13 13:58:20,175 | INFO     | sizes: {0: 2284623, 1: 2284623, 11: 2284651, 22: 2284969, 89772: 2371978, 89779: 2380976, 89782: 2381160, 89790: 2381502}
[2026-01-13 09:02:23] 2026-01-13 13:58:20,175 | INFO     | --------------------------------------------------
[2026-01-13 09:02:23] 2026-01-13 13:58:20,175 | INFO     | 
[2026-01-13 09:02:23] 2026-01-13 13:58:20,175 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-13 09:02:23] 2026-01-13 13:58:20,235 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,236 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,236 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,236 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,236 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,236 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,236 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,236 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,236 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,236 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,236 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,236 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,236 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,236 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,236 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,237 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,237 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,237 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 09:02:23] 2026-01-13 13:58:20,237 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,237 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 09:02:23] 2026-01-13 13:58:20,237 | INFO     | job 6966869533 has completed (purged errors)
[2026-01-13 09:02:23] 2026-01-13 13:58:20,237 | INFO     | overall cleanup function is called
[2026-01-13 09:02:23] 2026-01-13 13:58:21,090 | INFO     | PID=207855 has CPU usage=15.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 09:02:23] 2026-01-13 13:58:21,090 | INFO     | .. there are 12 such processes running
[2026-01-13 09:02:23] 2026-01-13 13:58:21,270 | INFO     | --- collectZombieJob: --- 10, [215929]
[2026-01-13 09:02:23] 2026-01-13 13:58:21,271 | INFO     | zombie collector waiting for pid 215929
[2026-01-13 09:02:23] 2026-01-13 13:58:21,271 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 09:02:23] 2026-01-13 13:58:21,271 | INFO     | collected zombie processes
[2026-01-13 09:02:23] 2026-01-13 13:58:21,271 | INFO     | will attempt to kill all subprocesses of pid=215929
[2026-01-13 09:02:23] 2026-01-13 13:58:21,592 | INFO     | process IDs to be killed: [215929] (in reverse order)
[2026-01-13 09:02:23] 2026-01-13 13:58:21,693 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 09:02:23] 2026-01-13 13:58:21,694 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 09:02:23] 2026-01-13 13:58:21,705 | INFO     | did not find any defunct processes belonging to 215929
[2026-01-13 09:02:23] 2026-01-13 13:58:21,714 | INFO     | did not find any defunct processes belonging to 215929
[2026-01-13 09:02:23] 2026-01-13 13:58:21,714 | INFO     | ready for new job
[2026-01-13 09:02:23] 2026-01-13 13:58:21,714 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 09:02:23] 2026-01-13 13:58:21,755 | INFO     | ***************************************
[2026-01-13 09:02:23] 2026-01-13 13:58:21,755 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 09:02:23] 2026-01-13 13:58:21,755 | INFO     | ***************************************
[2026-01-13 09:02:23] 2026-01-13 13:58:21,755 | INFO     | 
[2026-01-13 09:02:23] 2026-01-13 13:58:21,791 | INFO     | architecture information:
[2026-01-13 09:02:23] 2026-01-13 13:58:21,830 | INFO     | executing command: cat /etc/os-release
[2026-01-13 09:02:23] 2026-01-13 13:58:21,874 | INFO     | cat /etc/os-release:
[2026-01-13 09:02:23] NAME="CentOS Linux"
[2026-01-13 09:02:23] VERSION="7 (Core)"
[2026-01-13 09:02:23] ID="centos"
[2026-01-13 09:02:23] ID_LIKE="rhel fedora"
[2026-01-13 09:02:23] VERSION_ID="7"
[2026-01-13 09:02:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 09:02:23] ANSI_COLOR="0;31"
[2026-01-13 09:02:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 09:02:23] HOME_URL="https://www.centos.org/"
[2026-01-13 09:02:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 09:02:23] 
[2026-01-13 09:02:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 09:02:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 09:02:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 09:02:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 09:02:23] 
[2026-01-13 09:02:23] 2026-01-13 13:58:21,875 | INFO     | ***************************************
[2026-01-13 09:02:23] 2026-01-13 13:58:22,379 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-13 09:02:23] 2026-01-13 13:58:22,455 | INFO     | sufficient remaining disk space (82388713472 B)
[2026-01-13 09:02:23] 2026-01-13 13:58:22,455 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 09:02:23] 2026-01-13 13:58:22,455 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 09:02:23] 2026-01-13 13:58:22,481 | INFO     | update_server=False
[2026-01-13 09:02:23] 2026-01-13 13:58:22,481 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 09:02:23] 2026-01-13 13:58:22,481 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 09:02:23] 2026-01-13 13:58:22,482 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 09:02:23] 2026-01-13 13:58:22,615 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 09:02:23] 2026-01-13 13:58:22,616 | INFO     | aborting loop
[2026-01-13 09:02:23] 2026-01-13 13:58:23,047 | INFO     | all data control threads have been joined
[2026-01-13 09:02:23] 2026-01-13 13:58:23,392 | INFO     | all job control threads have been joined
[2026-01-13 09:02:23] 2026-01-13 13:58:23,487 | INFO     | [job] retrieve thread has finished
[2026-01-13 09:02:23] 2026-01-13 13:58:23,513 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 09:02:23] 2026-01-13 13:58:23,622 | INFO     | [job] job monitor thread has finished
[2026-01-13 09:02:23] 2026-01-13 13:58:23,691 | INFO     | all payload control threads have been joined
[2026-01-13 09:02:23] 2026-01-13 13:58:23,881 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 09:02:23] 2026-01-13 13:58:23,992 | INFO     | [payload] validate_post thread has finished
[2026-01-13 09:02:23] 2026-01-13 13:58:24,057 | INFO     | [data] control thread has finished
[2026-01-13 09:02:23] 2026-01-13 13:58:24,262 | INFO     | [data] copytool_in thread has finished
[2026-01-13 09:02:23] 2026-01-13 13:58:24,399 | INFO     | [job] control thread has finished
[2026-01-13 09:02:23] 2026-01-13 13:58:24,488 | INFO     | [data] copytool_out thread has finished
[2026-01-13 09:02:23] 2026-01-13 13:58:24,654 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 09:02:23] 2026-01-13 13:58:24,659 | INFO     | [payload] failed_post thread has finished
[2026-01-13 09:02:23] 2026-01-13 13:58:24,697 | INFO     | [payload] control thread has finished
[2026-01-13 09:02:23] 2026-01-13 13:58:24,776 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 09:02:23] 2026-01-13 13:58:24,786 | INFO     | [job] validate thread has finished
[2026-01-13 09:02:23] 2026-01-13 13:58:25,057 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 09:02:23] 2026-01-13 13:58:26,077 | INFO     | [job] queue monitor thread has finished
[2026-01-13 09:02:23] 2026-01-13 13:58:26,494 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 09:02:23] 2026-01-13 13:58:49,839 | INFO     | [monitor] cgroup control has ended
[2026-01-13 09:02:23] 2026-01-13 13:58:51,325 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139667811944256)>', '<ExcThread(monitor, started 139667454269184)>']
[2026-01-13 09:02:23] 2026-01-13 13:58:53,718 | INFO     | PID=207855 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-13 09:02:23] 2026-01-13 13:58:53,718 | INFO     | .. there are 12 such processes running
[2026-01-13 09:02:23] 2026-01-13 13:58:53,719 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 09:02:23] 2026-01-13 13:58:53,719 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 09:02:23] 2026-01-13 13:58:53,719 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 09:02:23] 2026-01-13 13:58:53,719 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 09:02:23] 2026-01-13 13:58:53,719 | INFO     | [monitor] control thread has ended
[2026-01-13 09:02:23] 2026-01-13 13:58:56,353 | INFO     | all workflow threads have been joined
[2026-01-13 09:02:23] 2026-01-13 13:58:56,354 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 09:02:23] 2026-01-13 13:58:56,354 | INFO     | traces error code: 0
[2026-01-13 09:02:23] 2026-01-13 13:58:56,354 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 09:02:23] 2026-01-13 13:58:56,721 [wrapper] ==== pilot stdout END ====
[2026-01-13 09:02:23] 2026-01-13 13:58:56,735 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 09:02:23] 2026-01-13 13:58:56,738 [wrapper] pilotpid: 207855
[2026-01-13 09:02:23] 2026-01-13 13:58:56,747 [wrapper] Pilot exit status: 0
[2026-01-13 09:02:23] 2026-01-13 13:58:56,759 [wrapper] pandaids: 6966869533
[2026-01-13 09:02:23] 2026-01-13 13:58:56,830 [wrapper] cleanup supervisor_pilot 2863716 207856
[2026-01-13 09:02:23] 2026-01-13 13:58:56,833 [wrapper] Test setup, not cleaning
[2026-01-13 09:02:23] 2026-01-13 13:58:56,841 [wrapper] apfmon messages muted
[2026-01-13 09:02:23] 2026-01-13 13:58:56,844 [wrapper] ==== wrapper stdout END ====
[2026-01-13 09:02:23] 2026-01-13 13:58:56,846 [wrapper] ==== wrapper stderr END ====
[2026-01-13 09:02:23]  *** Error codes and diagnostics ***
[2026-01-13 09:02:23]     "exeErrorCode": 0,
[2026-01-13 09:02:23]     "exeErrorDiag": "",
[2026-01-13 09:02:23]     "pilotErrorCode": 0,
[2026-01-13 09:02:23]     "pilotErrorDiag": "",
[2026-01-13 09:02:23]  *** Listing of results directory ***
[2026-01-13 09:02:23] total 1481880
[2026-01-13 09:02:23] -rw-r--r--. 1 boincer umatlas     579449 Jan 12 04:00 pilot3.tar.gz
[2026-01-13 09:02:23] -rw-r--r--. 1 boincer umatlas       5112 Jan 12 04:06 queuedata.json
[2026-01-13 09:02:23] -rwx------. 1 boincer umatlas      36322 Jan 12 04:08 runpilot2-wrapper.sh
[2026-01-13 09:02:23] -rw-r--r--. 1 boincer umatlas        100 Jan 12 08:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 09:02:23] -rwxr-xr-x. 1 boincer umatlas       7986 Jan 12 08:00 run_atlas
[2026-01-13 09:02:23] -rw-r--r--. 1 boincer umatlas        105 Jan 12 08:00 job.xml
[2026-01-13 09:02:23] -rw-r--r--. 2 boincer umatlas  320644135 Jan 12 08:00 EVNT.48118027._000461.pool.root.1
[2026-01-13 09:02:23] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 08:00 start_atlas.sh
[2026-01-13 09:02:23] drwxrwx--x. 2 boincer umatlas       4096 Jan 12 08:00 shared
[2026-01-13 09:02:23] -rw-r--r--. 2 boincer umatlas     592612 Jan 12 08:00 input.tar.gz
[2026-01-13 09:02:23] -rw-r--r--. 1 boincer umatlas          0 Jan 12 08:00 boinc_lockfile
[2026-01-13 09:02:23] -rw-r--r--. 1 boincer umatlas       2897 Jan 12 08:00 pandaJob.out
[2026-01-13 09:02:23] -rw-------. 1 boincer umatlas         57 Jan 12 08:00 setup.sh.local
[2026-01-13 09:02:23] -rw-------. 1 boincer umatlas     987696 Jan 12 08:01 agis_schedconf.cvmfs.json
[2026-01-13 09:02:23] drwx------. 5 boincer umatlas       4096 Jan 12 08:01 pilot3
[2026-01-13 09:02:23] -rw-r--r--. 1 boincer umatlas        533 Jan 13 08:50 boinc_task_state.xml
[2026-01-13 09:02:23] -rw-------. 1 boincer umatlas 1163408783 Jan 13 08:57 HITS.48187943._002247.pool.root.1
[2026-01-13 09:02:23] -rw-------. 1 boincer umatlas       1047 Jan 13 08:58 memory_monitor_summary.json
[2026-01-13 09:02:23] -rw-------. 1 boincer umatlas    1516240 Jan 13 08:58 agis_ddmendpoints.agis.ALL.json
[2026-01-13 09:02:23] -rw-------. 1 boincer umatlas    2874495 Jan 13 08:58 log.48187943._002247.job.log.tgz.1
[2026-01-13 09:02:23] -rw-------. 1 boincer umatlas      27613 Jan 13 08:58 heartbeat.json
[2026-01-13 09:02:23] -rw-------. 1 boincer umatlas         95 Jan 13 08:58 pilot_heartbeat.json
[2026-01-13 09:02:23] -rw-------. 1 boincer umatlas       4823 Jan 13 08:58 pilotlog.txt
[2026-01-13 09:02:23] -rw-------. 1 boincer umatlas   11841718 Jan 13 08:58 log.48187943._002247.job.log.1
[2026-01-13 09:02:23] -rw-------. 1 boincer umatlas        353 Jan 13 08:58 output.list
[2026-01-13 09:02:23] -rw-r--r--. 1 boincer umatlas        620 Jan 13 08:58 runtime_log
[2026-01-13 09:02:23] -rw-------. 1 boincer umatlas   14755840 Jan 13 08:58 result.tar.gz
[2026-01-13 09:02:23] -rw-r--r--. 1 boincer umatlas       9343 Jan 13 08:58 runtime_log.err
[2026-01-13 09:02:23] -rw-------. 1 boincer umatlas        661 Jan 13 08:58 FPkNDmq5Sz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcXnKDmjMbY4m.diag
[2026-01-13 09:02:23] -rw-r--r--. 1 boincer umatlas         29 Jan 13 09:02 wrapper_checkpoint.txt
[2026-01-13 09:02:23] -rw-r--r--. 1 boincer umatlas       6909 Jan 13 09:02 init_data.xml
[2026-01-13 09:02:23] -rw-r--r--. 1 boincer umatlas       8192 Jan 13 09:02 boinc_mmap_file
[2026-01-13 09:02:23] -rw-r--r--. 1 boincer umatlas      21304 Jan 13 09:02 stderr.txt
[2026-01-13 09:02:23] HITS file was successfully produced:
[2026-01-13 09:02:23] -rw-------. 1 boincer umatlas 1163408783 Jan 13 08:57 shared/HITS.pool.root.1
[2026-01-13 09:02:23]  *** Contents of shared directory: ***
[2026-01-13 09:02:23] total 1464288
[2026-01-13 09:02:23] -rw-r--r--. 2 boincer umatlas  320644135 Jan 12 08:00 ATLAS.root_0
[2026-01-13 09:02:23] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 08:00 start_atlas.sh
[2026-01-13 09:02:23] -rw-r--r--. 2 boincer umatlas     592612 Jan 12 08:00 input.tar.gz
[2026-01-13 09:02:23] -rw-------. 1 boincer umatlas 1163408783 Jan 13 08:57 HITS.pool.root.1
[2026-01-13 09:02:23] -rw-------. 1 boincer umatlas   14755840 Jan 13 08:58 result.tar.gz
09:02:25 (203818): run_atlas exited; CPU time 234281.764063
09:02:25 (203818): called boinc_finish(0)

</stderr_txt>
]]>

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