Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:30:41 (295188): wrapper (7.7.26015): starting
06:30:41 (295188): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 06:30:41] Arguments: --nthreads 8
[2026-01-12 06:30:41] Threads: 8
[2026-01-12 06:30:41] Checking for CVMFS
[2026-01-12 06:30:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 06:30:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 06:30:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 06:30:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 06:30:41] 2.13.3.0 11585 27140 154640 155051 1 100 29617808 40960001 14583 16776704 0 44405669 99.746 27488582 35714 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 06:30:41] CVMFS is ok
[2026-01-12 06:30:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 06:30:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 06:30:41] Further information can be found at the LHC@home message board.
[2026-01-12 06:30:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 06:30:41] Checking for apptainer binary...
[2026-01-12 06:30:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 06:30:41] Running /usr/bin/apptainer --version
[2026-01-12 06:30:41] apptainer version 1.4.5-2.el9
[2026-01-12 06:30:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 06:30:42] c-212-9.aglt2.org
[2026-01-12 06:30:42] apptainer works
[2026-01-12 06:30:42] Set ATHENA_PROC_NUMBER=8
[2026-01-12 06:30:42] Set ATHENA_CORE_NUMBER=8
[2026-01-12 06:30:42] Starting ATLAS job with PandaID=6966864240
[2026-01-12 06:30:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 23:50:11]  *** The last 200 lines of the pilot log: ***
[2026-01-12 23:50:11] 2026-01-13 04:48:44,299 | INFO     | total number of processed events: 2050 (read)
[2026-01-12 23:50:11] 2026-01-13 04:48:44,307 | INFO     | executing command: lscpu
[2026-01-12 23:50:11] 2026-01-13 04:48:44,351 | INFO     | PID=298887 has CPU usage=17.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-12 23:50:11] 2026-01-13 04:48:44,351 | INFO     | .. there are 16 such processes running
[2026-01-12 23:50:11] 2026-01-13 04:48:44,425 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-12 23:50:11] 2026-01-13 04:48:45,353 | INFO     | time since job start (62269s) is within the limit (349056.0s)
[2026-01-12 23:50:11] 2026-01-13 04:48:46,320 | INFO     | monitor loop #4093: job 0:6966864240 is in state 'finished'
[2026-01-12 23:50:11] 2026-01-13 04:48:46,321 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 23:50:11] 2026-01-13 04:48:47,359 | INFO     | time since job start (62271s) is within the limit (349056.0s)
[2026-01-12 23:50:11] 2026-01-13 04:48:48,825 | INFO     | monitor loop #4094: job 0:6966864240 is in state 'finished'
[2026-01-12 23:50:11] 2026-01-13 04:48:48,826 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 23:50:11] 2026-01-13 04:48:49,370 | INFO     | time since job start (62273s) is within the limit (349056.0s)
[2026-01-12 23:50:11] 2026-01-13 04:48:51,330 | INFO     | monitor loop #4095: job 0:6966864240 is in state 'finished'
[2026-01-12 23:50:11] 2026-01-13 04:48:51,331 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 23:50:11] 2026-01-13 04:48:51,377 | INFO     | time since job start (62275s) is within the limit (349056.0s)
[2026-01-12 23:50:11] 2026-01-13 04:48:52,991 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-12 23:50:11] 2026-01-13 04:48:52,997 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3115.839239583333
[2026-01-12 23:50:11] 2026-01-13 04:48:53,027 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6966864240/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 23:50:11] 2026-01-13 04:48:53,028 | INFO     | extracted standard info from prmon json
[2026-01-12 23:50:11] 2026-01-13 04:48:53,030 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 23:50:11] 2026-01-13 04:48:53,030 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 23:50:11] 2026-01-13 04:48:53,044 | INFO     | fitting pss+swap vs Time
[2026-01-12 23:50:11] 2026-01-13 04:48:53,045 | INFO     | sum of square deviations: 330059006554.7996
[2026-01-12 23:50:11] 2026-01-13 04:48:53,065 | INFO     | sum of deviations: 478696777949.6263
[2026-01-12 23:50:11] 2026-01-13 04:48:53,066 | INFO     | mean x: 1768248604.641528
[2026-01-12 23:50:11] 2026-01-13 04:48:53,066 | INFO     | mean y: 3431854.8295788444
[2026-01-12 23:50:11] 2026-01-13 04:48:53,066 | INFO     | intersect: -2561124460.3918486
[2026-01-12 23:50:11] 2026-01-13 04:48:53,067 | INFO     | chi2: 15.438255324359176
[2026-01-12 23:50:11] 2026-01-13 04:48:53,068 | INFO     | sum of square deviations: 325235505561.55
[2026-01-12 23:50:11] 2026-01-13 04:48:53,088 | INFO     | sum of deviations: 896777813917.002
[2026-01-12 23:50:11] 2026-01-13 04:48:53,088 | INFO     | mean x: 1768248452.16437
[2026-01-12 23:50:11] 2026-01-13 04:48:53,088 | INFO     | mean y: 3445068.3592519686
[2026-01-12 23:50:11] 2026-01-13 04:48:53,089 | INFO     | intersect: -4872178761.997706
[2026-01-12 23:50:11] 2026-01-13 04:48:53,089 | INFO     | chi2: 12.01954780869866
[2026-01-12 23:50:11] 2026-01-13 04:48:53,089 | INFO     | current chi2=12.01954780869866 (change=22.144390307279902 %)
[2026-01-12 23:50:11] 2026-01-13 04:48:53,090 | INFO     | right removable region: 1015
[2026-01-12 23:50:11] 2026-01-13 04:48:53,090 | INFO     | sum of square deviations: 325232614771.54956
[2026-01-12 23:50:11] 2026-01-13 04:48:53,111 | INFO     | sum of deviations: 100712098318.86493
[2026-01-12 23:50:11] 2026-01-13 04:48:53,111 | INFO     | mean x: 1768248757.16437
[2026-01-12 23:50:11] 2026-01-13 04:48:53,111 | INFO     | mean y: 3443790.940944882
[2026-01-12 23:50:11] 2026-01-13 04:48:53,111 | INFO     | intersect: -544115200.9788502
[2026-01-12 23:50:11] 2026-01-13 04:48:53,112 | INFO     | chi2: 12.881041288699492
[2026-01-12 23:50:11] 2026-01-13 04:48:53,112 | INFO     | current chi2=12.881041288699492 (change=16.564138770426965 %)
[2026-01-12 23:50:11] 2026-01-13 04:48:53,112 | INFO     | left removable region: 10
[2026-01-12 23:50:11] 2026-01-13 04:48:53,113 | INFO     | sum of square deviations: 314784653734.8201
[2026-01-12 23:50:11] 2026-01-13 04:48:53,132 | INFO     | sum of deviations: 540611931654.22064
[2026-01-12 23:50:11] 2026-01-13 04:48:53,132 | INFO     | mean x: 1768248726.7054727
[2026-01-12 23:50:11] 2026-01-13 04:48:53,133 | INFO     | mean y: 3461526.250746269
[2026-01-12 23:50:11] 2026-01-13 04:48:53,133 | INFO     | intersect: -3033333147.337943
[2026-01-12 23:50:11] 2026-01-13 04:48:53,133 | INFO     | chi2: 8.794354995119454
[2026-01-12 23:50:11] 2026-01-13 04:48:53,134 | INFO     | current memory leak: 1.72 B/s (using 1005 data points, chi2=8.79)
[2026-01-12 23:50:11] 2026-01-13 04:48:53,134 | INFO     | could have reported an average CPU frequency of 3220 MHz (38 samples)
[2026-01-12 23:50:11] 2026-01-13 04:48:53,135 | INFO     | ..............................
[2026-01-12 23:50:11] 2026-01-13 04:48:53,135 | INFO     | . Timing measurements:
[2026-01-12 23:50:11] 2026-01-13 04:48:53,135 | INFO     | . get job = 0 s
[2026-01-12 23:50:11] 2026-01-13 04:48:53,135 | INFO     | . initial setup = 2 s
[2026-01-12 23:50:11] 2026-01-13 04:48:53,135 | INFO     | . payload setup = 10 s
[2026-01-12 23:50:11] 2026-01-13 04:48:53,135 | INFO     | . stage-in = 0 s
[2026-01-12 23:50:11] 2026-01-13 04:48:53,135 | INFO     | . payload execution = 62232 s
[2026-01-12 23:50:11] 2026-01-13 04:48:53,135 | INFO     | . stage-out = 5 s
[2026-01-12 23:50:11] 2026-01-13 04:48:53,135 | INFO     | . log creation = 1 s
[2026-01-12 23:50:11] 2026-01-13 04:48:53,135 | INFO     | ..............................
[2026-01-12 23:50:11] 2026-01-13 04:48:53,264 | INFO     | 
[2026-01-12 23:50:11] 2026-01-13 04:48:53,265 | INFO     | job summary report
[2026-01-12 23:50:11] 2026-01-13 04:48:53,265 | INFO     | --------------------------------------------------
[2026-01-12 23:50:11] 2026-01-13 04:48:53,265 | INFO     | PanDA job id: 6966864240
[2026-01-12 23:50:11] 2026-01-13 04:48:53,265 | INFO     | task id: 48187943
[2026-01-12 23:50:11] 2026-01-13 04:48:53,265 | INFO     | errors: (none)
[2026-01-12 23:50:11] 2026-01-13 04:48:53,265 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 23:50:11] 2026-01-13 04:48:53,265 | INFO     | pilot state: finished 
[2026-01-12 23:50:11] 2026-01-13 04:48:53,265 | INFO     | transexitcode: 0
[2026-01-12 23:50:11] 2026-01-13 04:48:53,265 | INFO     | exeerrorcode: 0
[2026-01-12 23:50:11] 2026-01-13 04:48:53,265 | INFO     | exeerrordiag: 
[2026-01-12 23:50:11] 2026-01-13 04:48:53,266 | INFO     | exitcode: 0
[2026-01-12 23:50:11] 2026-01-13 04:48:53,266 | INFO     | exitmsg: OK
[2026-01-12 23:50:11] 2026-01-13 04:48:53,266 | INFO     | cpuconsumptiontime: 234771 s
[2026-01-12 23:50:11] 2026-01-13 04:48:53,266 | INFO     | nevents: 2050
[2026-01-12 23:50:11] 2026-01-13 04:48:53,266 | INFO     | neventsw: 0
[2026-01-12 23:50:11] 2026-01-13 04:48:53,266 | INFO     | pid: 306315
[2026-01-12 23:50:11] 2026-01-13 04:48:53,266 | INFO     | pgrp: 306315
[2026-01-12 23:50:11] 2026-01-13 04:48:53,266 | INFO     | corecount: 8
[2026-01-12 23:50:11] 2026-01-13 04:48:53,266 | INFO     | event service: False
[2026-01-12 23:50:11] 2026-01-13 04:48:53,266 | INFO     | sizes: {0: 2284623, 6: 2284885, 11: 2284913, 62246: 2358626, 62247: 2358625, 62252: 2367679, 62253: 2367863, 62261: 2368109}
[2026-01-12 23:50:11] 2026-01-13 04:48:53,266 | INFO     | --------------------------------------------------
[2026-01-12 23:50:11] 2026-01-13 04:48:53,266 | INFO     | 
[2026-01-12 23:50:11] 2026-01-13 04:48:53,267 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-12 23:50:11] 2026-01-13 04:48:53,330 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,330 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,330 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,330 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,330 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,330 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,330 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,330 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,330 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,331 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,331 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,331 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,331 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,331 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,331 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,331 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,331 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,331 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 23:50:11] 2026-01-13 04:48:53,331 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,331 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 23:50:11] 2026-01-13 04:48:53,331 | INFO     | job 6966864240 has completed (purged errors)
[2026-01-12 23:50:11] 2026-01-13 04:48:53,331 | INFO     | overall cleanup function is called
[2026-01-12 23:50:11] 2026-01-13 04:48:54,347 | INFO     | --- collectZombieJob: --- 10, [306315]
[2026-01-12 23:50:11] 2026-01-13 04:48:54,348 | INFO     | zombie collector waiting for pid 306315
[2026-01-12 23:50:11] 2026-01-13 04:48:54,348 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 23:50:11] 2026-01-13 04:48:54,348 | INFO     | collected zombie processes
[2026-01-12 23:50:11] 2026-01-13 04:48:54,348 | INFO     | will attempt to kill all subprocesses of pid=306315
[2026-01-12 23:50:11] 2026-01-13 04:48:54,803 | INFO     | process IDs to be killed: [306315] (in reverse order)
[2026-01-12 23:50:11] 2026-01-13 04:48:55,120 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 23:50:11] 2026-01-13 04:48:55,121 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 23:50:11] 2026-01-13 04:48:55,193 | INFO     | did not find any defunct processes belonging to 306315
[2026-01-12 23:50:11] 2026-01-13 04:48:55,249 | INFO     | did not find any defunct processes belonging to 306315
[2026-01-12 23:50:11] 2026-01-13 04:48:55,264 | INFO     | ready for new job
[2026-01-12 23:50:11] 2026-01-13 04:48:55,264 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 23:50:11] 2026-01-13 04:48:55,283 | INFO     | ***************************************
[2026-01-12 23:50:11] 2026-01-13 04:48:55,284 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 23:50:11] 2026-01-13 04:48:55,284 | INFO     | ***************************************
[2026-01-12 23:50:11] 2026-01-13 04:48:55,284 | INFO     | 
[2026-01-12 23:50:11] 2026-01-13 04:48:55,298 | INFO     | architecture information:
[2026-01-12 23:50:11] 2026-01-13 04:48:55,298 | INFO     | executing command: cat /etc/os-release
[2026-01-12 23:50:11] 2026-01-13 04:48:55,456 | INFO     | cat /etc/os-release:
[2026-01-12 23:50:11] NAME="CentOS Linux"
[2026-01-12 23:50:11] VERSION="7 (Core)"
[2026-01-12 23:50:11] ID="centos"
[2026-01-12 23:50:11] ID_LIKE="rhel fedora"
[2026-01-12 23:50:11] VERSION_ID="7"
[2026-01-12 23:50:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 23:50:11] ANSI_COLOR="0;31"
[2026-01-12 23:50:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 23:50:11] HOME_URL="https://www.centos.org/"
[2026-01-12 23:50:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 23:50:11] 
[2026-01-12 23:50:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 23:50:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 23:50:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 23:50:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 23:50:11] 
[2026-01-12 23:50:11] 2026-01-13 04:48:55,456 | INFO     | ***************************************
[2026-01-12 23:50:11] 2026-01-13 04:48:55,960 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-12 23:50:11] 2026-01-13 04:48:56,024 | INFO     | sufficient remaining disk space (124335947776 B)
[2026-01-12 23:50:11] 2026-01-13 04:48:56,024 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 23:50:11] 2026-01-13 04:48:56,024 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 23:50:11] 2026-01-13 04:48:56,024 | INFO     | update_server=False
[2026-01-12 23:50:11] 2026-01-13 04:48:56,024 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 23:50:11] 2026-01-13 04:48:56,345 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-12 23:50:11] 2026-01-13 04:48:56,346 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-12 23:50:11] 2026-01-13 04:48:56,346 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 23:50:11] 2026-01-13 04:48:56,346 | INFO     | will abort loop
[2026-01-12 23:50:11] 2026-01-13 04:48:56,535 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 23:50:11] 2026-01-13 04:48:56,635 | INFO     | all payload control threads have been joined
[2026-01-12 23:50:11] 2026-01-13 04:48:56,725 | INFO     | all data control threads have been joined
[2026-01-12 23:50:11] 2026-01-13 04:48:57,030 | INFO     | [job] retrieve thread has finished
[2026-01-12 23:50:11] 2026-01-13 04:48:57,165 | INFO     | [payload] failed_post thread has finished
[2026-01-12 23:50:11] 2026-01-13 04:48:57,246 | INFO     | [payload] validate_post thread has finished
[2026-01-12 23:50:11] 2026-01-13 04:48:57,325 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 23:50:11] 2026-01-13 04:48:57,351 | INFO     | [job] job monitor thread has finished
[2026-01-12 23:50:11] 2026-01-13 04:48:57,512 | INFO     | all job control threads have been joined
[2026-01-12 23:50:11] 2026-01-13 04:48:57,641 | INFO     | [payload] control thread has finished
[2026-01-12 23:50:11] 2026-01-13 04:48:57,732 | INFO     | [data] control thread has finished
[2026-01-12 23:50:11] 2026-01-13 04:48:57,840 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 23:50:11] 2026-01-13 04:48:58,058 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 23:50:11] 2026-01-13 04:48:58,230 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 23:50:11] 2026-01-13 04:48:58,278 | INFO     | [job] validate thread has finished
[2026-01-12 23:50:11] 2026-01-13 04:48:58,281 | INFO     | [data] copytool_in thread has finished
[2026-01-12 23:50:11] 2026-01-13 04:48:58,441 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 23:50:11] 2026-01-13 04:48:58,518 | INFO     | [job] control thread has finished
[2026-01-12 23:50:11] 2026-01-13 04:48:58,542 | INFO     | [data] copytool_out thread has finished
[2026-01-12 23:50:11] 2026-01-13 04:48:59,236 | INFO     | [job] queue monitor thread has finished
[2026-01-12 23:50:11] 2026-01-13 04:48:59,325 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 23:50:11] 2026-01-13 04:49:03,339 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 23:50:11] 2026-01-13 04:49:23,406 | INFO     | 62279s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-12 23:50:11] 2026-01-13 04:49:24,982 | INFO     | PID=298887 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-12 23:50:11] 2026-01-13 04:49:24,983 | INFO     | .. there are 16 such processes running
[2026-01-12 23:50:11] 2026-01-13 04:49:24,983 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 23:50:11] 2026-01-13 04:49:24,984 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 23:50:11] 2026-01-13 04:49:24,984 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 23:50:11] 2026-01-13 04:49:44,164 | INFO     | [monitor] cgroup control has ended
[2026-01-12 23:50:11] 2026-01-13 04:49:45,563 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139863195252544)>', '<ExcThread(monitor, started 139862808172288)>']
[2026-01-12 23:50:11] 2026-01-13 04:49:46,107 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 23:50:11] 2026-01-13 04:49:46,108 | INFO     | [monitor] control thread has ended
[2026-01-12 23:50:11] 2026-01-13 04:49:50,589 | INFO     | all workflow threads have been joined
[2026-01-12 23:50:11] 2026-01-13 04:49:50,590 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 23:50:11] 2026-01-13 04:49:50,590 | INFO     | traces error code: 0
[2026-01-12 23:50:11] 2026-01-13 04:49:50,590 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 23:50:11] 2026-01-13 04:49:50,757 [wrapper] ==== pilot stdout END ====
[2026-01-12 23:50:11] 2026-01-13 04:49:50,760 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 23:50:11] 2026-01-13 04:49:50,762 [wrapper] pilotpid: 298887
[2026-01-12 23:50:11] 2026-01-13 04:49:50,764 [wrapper] Pilot exit status: 0
[2026-01-12 23:50:11] 2026-01-13 04:49:50,776 [wrapper] pandaids: 6966864240
[2026-01-12 23:50:11] 2026-01-13 04:49:50,881 [wrapper] cleanup supervisor_pilot 2500708 298888
[2026-01-12 23:50:11] 2026-01-13 04:49:50,888 [wrapper] Test setup, not cleaning
[2026-01-12 23:50:11] 2026-01-13 04:49:50,895 [wrapper] apfmon messages muted
[2026-01-12 23:50:11] 2026-01-13 04:49:50,930 [wrapper] ==== wrapper stdout END ====
[2026-01-12 23:50:11] 2026-01-13 04:49:50,956 [wrapper] ==== wrapper stderr END ====
[2026-01-12 23:50:11]  *** Error codes and diagnostics ***
[2026-01-12 23:50:12]     "exeErrorCode": 0,
[2026-01-12 23:50:12]     "exeErrorDiag": "",
[2026-01-12 23:50:12]     "pilotErrorCode": 0,
[2026-01-12 23:50:12]     "pilotErrorDiag": "",
[2026-01-12 23:50:12]  *** Listing of results directory ***
[2026-01-12 23:50:12] total 1484132
[2026-01-12 23:50:12] -rw-r--r--. 1 boincer umatlas     579449 Jan 12 04:00 pilot3.tar.gz
[2026-01-12 23:50:12] -rwx------. 1 boincer umatlas      36322 Jan 12 04:02 runpilot2-wrapper.sh
[2026-01-12 23:50:12] -rw-r--r--. 1 boincer umatlas       5112 Jan 12 04:03 queuedata.json
[2026-01-12 23:50:12] -rw-r--r--. 1 boincer umatlas        100 Jan 12 06:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 23:50:12] -rwxr-xr-x. 1 boincer umatlas       7986 Jan 12 06:30 run_atlas
[2026-01-12 23:50:12] -rw-r--r--. 1 boincer umatlas        105 Jan 12 06:30 job.xml
[2026-01-12 23:50:12] -rw-r--r--. 2 boincer umatlas  317802078 Jan 12 06:30 EVNT.48118027._000320.pool.root.1
[2026-01-12 23:50:12] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 06:30 start_atlas.sh
[2026-01-12 23:50:12] drwxrwx--x. 2 boincer umatlas       4096 Jan 12 06:30 shared
[2026-01-12 23:50:12] -rw-r--r--. 2 boincer umatlas     592607 Jan 12 06:30 input.tar.gz
[2026-01-12 23:50:12] -rw-r--r--. 1 boincer umatlas          0 Jan 12 06:30 boinc_lockfile
[2026-01-12 23:50:12] -rw-r--r--. 1 boincer umatlas       2897 Jan 12 06:30 pandaJob.out
[2026-01-12 23:50:12] -rw-------. 1 boincer umatlas         57 Jan 12 06:30 setup.sh.local
[2026-01-12 23:50:12] -rw-------. 1 boincer umatlas     987696 Jan 12 06:30 agis_schedconf.cvmfs.json
[2026-01-12 23:50:12] drwx------. 5 boincer umatlas       4096 Jan 12 06:30 pilot3
[2026-01-12 23:50:12] -rw-r--r--. 1 boincer umatlas        533 Jan 12 23:25 boinc_task_state.xml
[2026-01-12 23:50:12] -rw-------. 1 boincer umatlas 1176325435 Jan 12 23:47 HITS.48187943._001560.pool.root.1
[2026-01-12 23:50:12] -rw-------. 1 boincer umatlas       1062 Jan 12 23:48 memory_monitor_summary.json
[2026-01-12 23:50:12] -rw-r--r--. 1 boincer umatlas       6956 Jan 12 23:48 init_data.xml
[2026-01-12 23:50:12] -rw-------. 1 boincer umatlas    1516240 Jan 12 23:48 agis_ddmendpoints.agis.ALL.json
[2026-01-12 23:50:12] -rw-------. 1 boincer umatlas    2537760 Jan 12 23:48 log.48187943._001560.job.log.tgz.1
[2026-01-12 23:50:12] -rw-------. 1 boincer umatlas      27283 Jan 12 23:48 heartbeat.json
[2026-01-12 23:50:12] -rw-------. 1 boincer umatlas         95 Jan 12 23:49 pilot_heartbeat.json
[2026-01-12 23:50:12] -rw-------. 1 boincer umatlas       5126 Jan 12 23:49 pilotlog.txt
[2026-01-12 23:50:12] -rw-------. 1 boincer umatlas    8296172 Jan 12 23:49 log.48187943._001560.job.log.1
[2026-01-12 23:50:12] -rw-------. 1 boincer umatlas        353 Jan 12 23:49 output.list
[2026-01-12 23:50:12] -rw-r--r--. 1 boincer umatlas        620 Jan 12 23:49 runtime_log
[2026-01-12 23:50:12] -rw-------. 1 boincer umatlas   10874880 Jan 12 23:49 result.tar.gz
[2026-01-12 23:50:12] -rw-r--r--. 1 boincer umatlas       9338 Jan 12 23:49 runtime_log.err
[2026-01-12 23:50:12] -rw-------. 1 boincer umatlas        663 Jan 12 23:49 FnLKDmzzSz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRPnKDml6TATn.diag
[2026-01-12 23:50:12] -rw-r--r--. 1 boincer umatlas       8192 Jan 12 23:50 boinc_mmap_file
[2026-01-12 23:50:12] -rw-r--r--. 1 boincer umatlas         29 Jan 12 23:50 wrapper_checkpoint.txt
[2026-01-12 23:50:12] -rw-r--r--. 1 boincer umatlas      21757 Jan 12 23:50 stderr.txt
[2026-01-12 23:50:12] HITS file was successfully produced:
[2026-01-12 23:50:12] -rw-------. 1 boincer umatlas 1176325435 Jan 12 23:47 shared/HITS.pool.root.1
[2026-01-12 23:50:12]  *** Contents of shared directory: ***
[2026-01-12 23:50:12] total 1470332
[2026-01-12 23:50:12] -rw-r--r--. 2 boincer umatlas  317802078 Jan 12 06:30 ATLAS.root_0
[2026-01-12 23:50:12] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 06:30 start_atlas.sh
[2026-01-12 23:50:12] -rw-r--r--. 2 boincer umatlas     592607 Jan 12 06:30 input.tar.gz
[2026-01-12 23:50:12] -rw-------. 1 boincer umatlas 1176325435 Jan 12 23:47 HITS.pool.root.1
[2026-01-12 23:50:12] -rw-------. 1 boincer umatlas   10874880 Jan 12 23:49 result.tar.gz
23:50:13 (295188): run_atlas exited; CPU time 234766.894368
23:50:13 (295188): called boinc_finish(0)

</stderr_txt>
]]>

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