Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:58:16 (3563593): wrapper (7.7.26015): starting
11:58:16 (3563593): wrapper: running run_atlas (--nthreads 3)
[2026-01-12 11:58:16] Arguments: --nthreads 3
[2026-01-12 11:58:16] Threads: 3
[2026-01-12 11:58:16] Checking for CVMFS
[2026-01-12 11:58:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 11:58:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 11:58:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 11:58:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 11:58:19] 2.9.2.0 3563789 0 29972 155049 3 1 23086918 36864001 0 130560 0 0 0.000 1335 21190 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-12 11:58:19] CVMFS is ok
[2026-01-12 11:58:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 11:58:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 11:58:19] Further information can be found at the LHC@home message board.
[2026-01-12 11:58:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 11:58:19] Checking for apptainer binary...
[2026-01-12 11:58:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 11:58:19] Running /usr/bin/apptainer --version
[2026-01-12 11:58:19] apptainer version 1.4.1-1.1
[2026-01-12 11:58:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 11:58:19] thA349
[2026-01-12 11:58:19] apptainer works
[2026-01-12 11:58:19] Set ATHENA_PROC_NUMBER=3
[2026-01-12 11:58:19] Set ATHENA_CORE_NUMBER=3
[2026-01-12 11:58:19] Starting ATLAS job with PandaID=6966869134
[2026-01-12 11:58:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 21:39:16]  *** The last 200 lines of the pilot log: ***
[2026-01-12 21:39:16] 2026-01-12 20:38:13,558 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 21:39:16] 2026-01-12 20:38:13,558 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 21:39:16] 2026-01-12 20:38:13,558 | INFO     | job 6966869134 has completed (purged errors)
[2026-01-12 21:39:16] 2026-01-12 20:38:13,558 | INFO     | overall cleanup function is called
[2026-01-12 21:39:16] 2026-01-12 20:38:14,567 | INFO     | --- collectZombieJob: --- 10, [3574963]
[2026-01-12 21:39:16] 2026-01-12 20:38:14,567 | INFO     | zombie collector waiting for pid 3574963
[2026-01-12 21:39:16] 2026-01-12 20:38:14,567 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 21:39:16] 2026-01-12 20:38:14,567 | INFO     | collected zombie processes
[2026-01-12 21:39:16] 2026-01-12 20:38:14,567 | INFO     | will attempt to kill all subprocesses of pid=3574963
[2026-01-12 21:39:16] 2026-01-12 20:38:14,609 | INFO     | process IDs to be killed: [3574963] (in reverse order)
[2026-01-12 21:39:16] 2026-01-12 20:38:14,632 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 21:39:16] 2026-01-12 20:38:14,632 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 21:39:16] 2026-01-12 20:38:14,633 | INFO     | did not find any defunct processes belonging to 3574963
[2026-01-12 21:39:16] 2026-01-12 20:38:14,634 | INFO     | did not find any defunct processes belonging to 3574963
[2026-01-12 21:39:16] 2026-01-12 20:38:14,634 | INFO     | ready for new job
[2026-01-12 21:39:16] 2026-01-12 20:38:14,634 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 21:39:16] 2026-01-12 20:38:14,636 | INFO     | ***************************************
[2026-01-12 21:39:16] 2026-01-12 20:38:14,636 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 21:39:16] 2026-01-12 20:38:14,636 | INFO     | ***************************************
[2026-01-12 21:39:16] 2026-01-12 20:38:14,636 | INFO     | 
[2026-01-12 21:39:16] 2026-01-12 20:38:14,636 | INFO     | architecture information:
[2026-01-12 21:39:16] 2026-01-12 20:38:14,636 | INFO     | executing command: cat /etc/os-release
[2026-01-12 21:39:16] 2026-01-12 20:38:14,644 | INFO     | cat /etc/os-release:
[2026-01-12 21:39:16] NAME="CentOS Linux"
[2026-01-12 21:39:16] VERSION="7 (Core)"
[2026-01-12 21:39:16] ID="centos"
[2026-01-12 21:39:16] ID_LIKE="rhel fedora"
[2026-01-12 21:39:16] VERSION_ID="7"
[2026-01-12 21:39:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 21:39:16] ANSI_COLOR="0;31"
[2026-01-12 21:39:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 21:39:16] HOME_URL="https://www.centos.org/"
[2026-01-12 21:39:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 21:39:16] 
[2026-01-12 21:39:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 21:39:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 21:39:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 21:39:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 21:39:16] 
[2026-01-12 21:39:16] 2026-01-12 20:38:14,644 | INFO     | ***************************************
[2026-01-12 21:39:16] 2026-01-12 20:38:15,147 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-12 21:39:16] 2026-01-12 20:38:15,160 | INFO     | sufficient remaining disk space (281317212160 B)
[2026-01-12 21:39:16] 2026-01-12 20:38:15,160 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 21:39:16] 2026-01-12 20:38:15,160 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 21:39:16] 2026-01-12 20:38:15,160 | INFO     | update_server=False
[2026-01-12 21:39:16] 2026-01-12 20:38:15,160 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 21:39:16] 2026-01-12 20:38:15,160 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 21:39:16] 2026-01-12 20:38:15,160 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 21:39:16] 2026-01-12 20:38:15,161 | INFO     | aborting loop
[2026-01-12 21:39:16] 2026-01-12 20:38:15,216 | INFO     | all job control threads have been joined
[2026-01-12 21:39:16] 2026-01-12 20:38:15,616 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 21:39:16] 2026-01-12 20:38:15,618 | INFO     | all data control threads have been joined
[2026-01-12 21:39:16] 2026-01-12 20:38:16,166 | INFO     | [job] retrieve thread has finished
[2026-01-12 21:39:16] 2026-01-12 20:38:16,166 | INFO     | [job] queue monitor thread has finished
[2026-01-12 21:39:16] 2026-01-12 20:38:16,166 | INFO     | [job] job monitor thread has finished
[2026-01-12 21:39:16] 2026-01-12 20:38:16,222 | INFO     | [job] control thread has finished
[2026-01-12 21:39:16] 2026-01-12 20:38:16,275 | INFO     | [data] copytool_in thread has finished
[2026-01-12 21:39:16] 2026-01-12 20:38:16,293 | INFO     | [payload] validate_post thread has finished
[2026-01-12 21:39:16] 2026-01-12 20:38:16,331 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 21:39:16] 2026-01-12 20:38:16,383 | INFO     | all payload control threads have been joined
[2026-01-12 21:39:16] 2026-01-12 20:38:16,622 | INFO     | [data] control thread has finished
[2026-01-12 21:39:16] 2026-01-12 20:38:16,836 | INFO     | [job] validate thread has finished
[2026-01-12 21:39:16] 2026-01-12 20:38:16,837 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 21:39:16] 2026-01-12 20:38:17,109 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 21:39:16] 2026-01-12 20:38:17,160 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 21:39:16] 2026-01-12 20:38:17,293 | INFO     | [payload] failed_post thread has finished
[2026-01-12 21:39:16] 2026-01-12 20:38:17,389 | INFO     | [payload] control thread has finished
[2026-01-12 21:39:16] 2026-01-12 20:38:17,623 | INFO     | [data] copytool_out thread has finished
[2026-01-12 21:39:16] 2026-01-12 20:38:20,338 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 21:39:16] 2026-01-12 20:38:26,149 | INFO     | job.realtimelogging is not enabled
[2026-01-12 21:39:16] 2026-01-12 20:38:27,155 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 21:39:16] 2026-01-12 20:38:45,090 | INFO     | PID=3567859 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-12 21:39:16] 2026-01-12 20:38:45,091 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 21:39:16] 2026-01-12 20:38:45,091 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 21:39:16] 2026-01-12 20:38:45,091 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 21:39:16] 2026-01-12 20:39:09,654 | INFO     | [monitor] cgroup control has ended
[2026-01-12 21:39:16] 2026-01-12 20:39:11,644 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139924981638976)>', '<ExcThread(monitor, started 139924615436032)>']
[2026-01-12 21:39:16] 2026-01-12 20:39:12,232 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 21:39:16] 2026-01-12 20:39:12,232 | INFO     | [monitor] control thread has ended
[2026-01-12 21:39:16] 2026-01-12 20:39:16,670 | INFO     | all workflow threads have been joined
[2026-01-12 21:39:16] 2026-01-12 20:39:16,670 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 21:39:16] 2026-01-12 20:39:16,670 | INFO     | traces error code: 0
[2026-01-12 21:39:16] 2026-01-12 20:39:16,670 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 21:39:16] 2026-01-12 20:39:16,721 [wrapper] ==== pilot stdout END ====
[2026-01-12 21:39:16] 2026-01-12 20:39:16,723 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 21:39:16] 2026-01-12 20:39:16,726 [wrapper] pilotpid: 3567859
[2026-01-12 21:39:16] 2026-01-12 20:39:16,728 [wrapper] Pilot exit status: 0
[2026-01-12 21:39:16] 2026-01-12 20:39:16,735 [wrapper] pandaids: 6966869134
[2026-01-12 21:39:16] 2026-01-12 20:39:16,751 [wrapper] cleanup supervisor_pilot 3636528 3567860
[2026-01-12 21:39:16] 2026-01-12 20:39:16,753 [wrapper] Test setup, not cleaning
[2026-01-12 21:39:16] 2026-01-12 20:39:16,756 [wrapper] apfmon messages muted
[2026-01-12 21:39:16] 2026-01-12 20:39:16,758 [wrapper] ==== wrapper stdout END ====
[2026-01-12 21:39:16] 2026-01-12 20:39:16,760 [wrapper] ==== wrapper stderr END ====
[2026-01-12 21:39:16]  *** Error codes and diagnostics ***
[2026-01-12 21:39:16]     "exeErrorCode": 0,
[2026-01-12 21:39:16]     "exeErrorDiag": "",
[2026-01-12 21:39:16]     "pilotErrorCode": 0,
[2026-01-12 21:39:16]     "pilotErrorDiag": "",
[2026-01-12 21:39:16]  *** Listing of results directory ***
[2026-01-12 21:39:16] total 1473128
[2026-01-12 21:39:16] -rw-r--r-- 1 boinc boinc     579449 Jan 12 10:00 pilot3.tar.gz
[2026-01-12 21:39:16] -rw-r--r-- 1 boinc boinc       5112 Jan 12 10:06 queuedata.json
[2026-01-12 21:39:16] -rwx------ 1 boinc boinc      36322 Jan 12 10:08 runpilot2-wrapper.sh
[2026-01-12 21:39:16] -rw-r--r-- 1 boinc boinc        100 Jan 12 11:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 21:39:16] -rwxr-xr-x 1 boinc boinc       7986 Jan 12 11:58 run_atlas
[2026-01-12 21:39:16] -rw-r--r-- 1 boinc boinc        105 Jan 12 11:58 job.xml
[2026-01-12 21:39:16] -rw-r--r-- 2 boinc boinc  321162057 Jan 12 11:58 EVNT.48118027._000441.pool.root.1
[2026-01-12 21:39:16] -rw-r--r-- 2 boinc boinc     592606 Jan 12 11:58 input.tar.gz
[2026-01-12 21:39:16] -rw-r--r-- 2 boinc boinc      15847 Jan 12 11:58 start_atlas.sh
[2026-01-12 21:39:16] drwxrwx--x 2 boinc boinc       4096 Jan 12 11:58 shared
[2026-01-12 21:39:16] -rw-r--r-- 1 boinc boinc          0 Jan 12 11:58 boinc_setup_complete
[2026-01-12 21:39:16] -rw-r--r-- 1 boinc boinc       6445 Jan 12 11:58 init_data.xml
[2026-01-12 21:39:16] -rw-r--r-- 1 boinc boinc          0 Jan 12 11:58 boinc_lockfile
[2026-01-12 21:39:16] -rw-r--r-- 1 boinc boinc       2897 Jan 12 11:58 pandaJob.out
[2026-01-12 21:39:16] -rw------- 1 boinc boinc     987696 Jan 12 11:58 agis_schedconf.cvmfs.json
[2026-01-12 21:39:16] drwx------ 5 boinc boinc       4096 Jan 12 11:58 pilot3
[2026-01-12 21:39:16] -rw-r--r-- 1 boinc boinc        532 Jan 12 21:35 boinc_task_state.xml
[2026-01-12 21:39:16] -rw------- 1 boinc boinc 1170696468 Jan 12 21:37 HITS.48187943._002150.pool.root.1
[2026-01-12 21:39:16] -rw------- 1 boinc boinc       1022 Jan 12 21:38 memory_monitor_summary.json
[2026-01-12 21:39:16] -rw------- 1 boinc boinc    1516240 Jan 12 21:38 agis_ddmendpoints.agis.ALL.json
[2026-01-12 21:39:16] -rw------- 1 boinc boinc    1453793 Jan 12 21:38 log.48187943._002150.job.log.tgz.1
[2026-01-12 21:39:16] -rw------- 1 boinc boinc      27390 Jan 12 21:38 heartbeat.json
[2026-01-12 21:39:16] -rw------- 1 boinc boinc         95 Jan 12 21:38 pilot_heartbeat.json
[2026-01-12 21:39:16] -rw-r--r-- 1 boinc boinc         29 Jan 12 21:38 wrapper_checkpoint.txt
[2026-01-12 21:39:16] -rw-r--r-- 1 boinc boinc       8192 Jan 12 21:38 boinc_mmap_file
[2026-01-12 21:39:16] -rw------- 1 boinc boinc       4824 Jan 12 21:39 pilotlog.txt
[2026-01-12 21:39:16] -rw------- 1 boinc boinc    4890320 Jan 12 21:39 log.48187943._002150.job.log.1
[2026-01-12 21:39:16] -rw------- 1 boinc boinc        353 Jan 12 21:39 output.list
[2026-01-12 21:39:16] -rw-r--r-- 1 boinc boinc        620 Jan 12 21:39 runtime_log
[2026-01-12 21:39:16] -rw------- 1 boinc boinc    6379520 Jan 12 21:39 result.tar.gz
[2026-01-12 21:39:16] -rw-r--r-- 1 boinc boinc       8898 Jan 12 21:39 runtime_log.err
[2026-01-12 21:39:16] -rw------- 1 boinc boinc        667 Jan 12 21:39 NDcLDmq5Sz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgWnKDmaD9ACn.diag
[2026-01-12 21:39:16] -rw-r--r-- 1 boinc boinc      11098 Jan 12 21:39 stderr.txt
[2026-01-12 21:39:16] HITS file was successfully produced:
[2026-01-12 21:39:16] -rw------- 1 boinc boinc 1170696468 Jan 12 21:37 shared/HITS.pool.root.1
[2026-01-12 21:39:16]  *** Contents of shared directory: ***
[2026-01-12 21:39:16] total 1463732
[2026-01-12 21:39:16] -rw-r--r-- 2 boinc boinc  321162057 Jan 12 11:58 ATLAS.root_0
[2026-01-12 21:39:16] -rw-r--r-- 2 boinc boinc     592606 Jan 12 11:58 input.tar.gz
[2026-01-12 21:39:16] -rw-r--r-- 2 boinc boinc      15847 Jan 12 11:58 start_atlas.sh
[2026-01-12 21:39:16] -rw------- 1 boinc boinc 1170696468 Jan 12 21:37 HITS.pool.root.1
[2026-01-12 21:39:16] -rw------- 1 boinc boinc    6379520 Jan 12 21:39 result.tar.gz
21:39:38 (3563593): run_atlas exited; CPU time 103048.171774
21:39:38 (3563593): called boinc_finish(0)

</stderr_txt>
]]>

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