Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:59:40 (3829864): wrapper (7.7.26015): starting
11:59:40 (3829864): wrapper: running run_atlas (--nthreads 3)
[2026-01-12 11:59:40] Arguments: --nthreads 3
[2026-01-12 11:59:40] Threads: 3
[2026-01-12 11:59:40] Checking for CVMFS
[2026-01-12 11:59:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 11:59:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 11:59:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 11:59:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 11:59:41] 2.9.2.0 3830060 0 29720 155049 4 1 21602095 36864000 0 130560 0 0 0.000 1335 12594 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-12 11:59:41] CVMFS is ok
[2026-01-12 11:59:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 11:59:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 11:59:41] Further information can be found at the LHC@home message board.
[2026-01-12 11:59:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 11:59:41] Checking for apptainer binary...
[2026-01-12 11:59:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 11:59:41] Running /usr/bin/apptainer --version
[2026-01-12 11:59:41] apptainer version 1.4.1-1.1
[2026-01-12 11:59:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 11:59:42] atlasA303a
[2026-01-12 11:59:42] apptainer works
[2026-01-12 11:59:42] Set ATHENA_PROC_NUMBER=3
[2026-01-12 11:59:42] Set ATHENA_CORE_NUMBER=3
[2026-01-12 11:59:42] Starting ATLAS job with PandaID=6966861666
[2026-01-12 11:59:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 21:34:34]  *** The last 200 lines of the pilot log: ***
[2026-01-12 21:34:34] 2026-01-12 20:33:48,847 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 21:34:34] 2026-01-12 20:33:48,847 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 21:34:34] 2026-01-12 20:33:48,847 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 21:34:34] 2026-01-12 20:33:48,847 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 21:34:34] 2026-01-12 20:33:48,847 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 21:34:34] 2026-01-12 20:33:48,847 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 21:34:34] 2026-01-12 20:33:48,847 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 21:34:34] 2026-01-12 20:33:48,847 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 21:34:34] 2026-01-12 20:33:48,847 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 21:34:34] 2026-01-12 20:33:48,847 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 21:34:34] 2026-01-12 20:33:48,847 | INFO     | job 6966861666 has completed (purged errors)
[2026-01-12 21:34:34] 2026-01-12 20:33:48,847 | INFO     | overall cleanup function is called
[2026-01-12 21:34:34] 2026-01-12 20:33:49,856 | INFO     | --- collectZombieJob: --- 10, [3841288]
[2026-01-12 21:34:34] 2026-01-12 20:33:49,856 | INFO     | zombie collector waiting for pid 3841288
[2026-01-12 21:34:34] 2026-01-12 20:33:49,856 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 21:34:34] 2026-01-12 20:33:49,856 | INFO     | collected zombie processes
[2026-01-12 21:34:34] 2026-01-12 20:33:49,856 | INFO     | will attempt to kill all subprocesses of pid=3841288
[2026-01-12 21:34:34] 2026-01-12 20:33:49,898 | INFO     | process IDs to be killed: [3841288] (in reverse order)
[2026-01-12 21:34:34] 2026-01-12 20:33:49,924 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 21:34:34] 2026-01-12 20:33:49,924 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 21:34:34] 2026-01-12 20:33:49,925 | INFO     | did not find any defunct processes belonging to 3841288
[2026-01-12 21:34:34] 2026-01-12 20:33:49,926 | INFO     | did not find any defunct processes belonging to 3841288
[2026-01-12 21:34:34] 2026-01-12 20:33:49,926 | INFO     | ready for new job
[2026-01-12 21:34:34] 2026-01-12 20:33:49,926 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 21:34:34] 2026-01-12 20:33:49,927 | INFO     | ***************************************
[2026-01-12 21:34:34] 2026-01-12 20:33:49,928 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 21:34:34] 2026-01-12 20:33:49,928 | INFO     | ***************************************
[2026-01-12 21:34:34] 2026-01-12 20:33:49,928 | INFO     | 
[2026-01-12 21:34:34] 2026-01-12 20:33:49,928 | INFO     | architecture information:
[2026-01-12 21:34:34] 2026-01-12 20:33:49,928 | INFO     | executing command: cat /etc/os-release
[2026-01-12 21:34:34] 2026-01-12 20:33:49,939 | INFO     | cat /etc/os-release:
[2026-01-12 21:34:34] NAME="CentOS Linux"
[2026-01-12 21:34:34] VERSION="7 (Core)"
[2026-01-12 21:34:34] ID="centos"
[2026-01-12 21:34:34] ID_LIKE="rhel fedora"
[2026-01-12 21:34:34] VERSION_ID="7"
[2026-01-12 21:34:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 21:34:34] ANSI_COLOR="0;31"
[2026-01-12 21:34:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 21:34:34] HOME_URL="https://www.centos.org/"
[2026-01-12 21:34:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 21:34:34] 
[2026-01-12 21:34:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 21:34:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 21:34:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 21:34:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 21:34:34] 
[2026-01-12 21:34:34] 2026-01-12 20:33:49,939 | INFO     | ***************************************
[2026-01-12 21:34:34] 2026-01-12 20:33:50,442 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-12 21:34:34] 2026-01-12 20:33:50,456 | INFO     | sufficient remaining disk space (383734775808 B)
[2026-01-12 21:34:34] 2026-01-12 20:33:50,456 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 21:34:34] 2026-01-12 20:33:50,456 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 21:34:34] 2026-01-12 20:33:50,457 | INFO     | update_server=False
[2026-01-12 21:34:34] 2026-01-12 20:33:50,457 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 21:34:34] 2026-01-12 20:33:50,457 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 21:34:34] 2026-01-12 20:33:50,457 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 21:34:34] 2026-01-12 20:33:50,731 | INFO     | all job control threads have been joined
[2026-01-12 21:34:34] 2026-01-12 20:33:51,456 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 21:34:34] 2026-01-12 20:33:51,456 | INFO     | aborting loop
[2026-01-12 21:34:34] 2026-01-12 20:33:51,462 | INFO     | [job] queue monitor thread has finished
[2026-01-12 21:34:34] 2026-01-12 20:33:51,463 | INFO     | [job] retrieve thread has finished
[2026-01-12 21:34:34] 2026-01-12 20:33:51,463 | INFO     | all payload control threads have been joined
[2026-01-12 21:34:34] 2026-01-12 20:33:51,506 | INFO     | all data control threads have been joined
[2026-01-12 21:34:34] 2026-01-12 20:33:51,686 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 21:34:34] 2026-01-12 20:33:51,736 | INFO     | [job] control thread has finished
[2026-01-12 21:34:34] 2026-01-12 20:33:51,880 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 21:34:34] 2026-01-12 20:33:51,880 | INFO     | [data] copytool_in thread has finished
[2026-01-12 21:34:34] 2026-01-12 20:33:51,880 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 21:34:34] 2026-01-12 20:33:51,881 | INFO     | [payload] failed_post thread has finished
[2026-01-12 21:34:34] 2026-01-12 20:33:52,002 | INFO     | [job] validate thread has finished
[2026-01-12 21:34:34] 2026-01-12 20:33:52,127 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 21:34:34] 2026-01-12 20:33:52,366 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 21:34:34] 2026-01-12 20:33:52,418 | INFO     | [payload] validate_post thread has finished
[2026-01-12 21:34:34] 2026-01-12 20:33:52,462 | INFO     | [job] job monitor thread has finished
[2026-01-12 21:34:34] 2026-01-12 20:33:52,462 | INFO     | [data] copytool_out thread has finished
[2026-01-12 21:34:34] 2026-01-12 20:33:52,469 | INFO     | [payload] control thread has finished
[2026-01-12 21:34:34] 2026-01-12 20:33:52,512 | INFO     | [data] control thread has finished
[2026-01-12 21:34:34] 2026-01-12 20:33:56,373 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 21:34:34] 2026-01-12 20:34:20,322 | INFO     | PID=3834152 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-12 21:34:34] 2026-01-12 20:34:20,322 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 21:34:34] 2026-01-12 20:34:20,322 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 21:34:34] 2026-01-12 20:34:20,322 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 21:34:34] 2026-01-12 20:34:27,976 | INFO     | [monitor] cgroup control has ended
[2026-01-12 21:34:34] 2026-01-12 20:34:28,948 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140582508816192)>', '<ExcThread(monitor, started 140582156478208)>']
[2026-01-12 21:34:34] 2026-01-12 20:34:29,367 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 21:34:34] 2026-01-12 20:34:29,367 | INFO     | [monitor] control thread has ended
[2026-01-12 21:34:34] 2026-01-12 20:34:33,972 | INFO     | all workflow threads have been joined
[2026-01-12 21:34:34] 2026-01-12 20:34:33,972 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 21:34:34] 2026-01-12 20:34:33,973 | INFO     | traces error code: 0
[2026-01-12 21:34:34] 2026-01-12 20:34:33,973 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 21:34:34] 2026-01-12 20:34:34,025 [wrapper] ==== pilot stdout END ====
[2026-01-12 21:34:34] 2026-01-12 20:34:34,027 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 21:34:34] 2026-01-12 20:34:34,030 [wrapper] pilotpid: 3834152
[2026-01-12 21:34:34] 2026-01-12 20:34:34,033 [wrapper] Pilot exit status: 0
[2026-01-12 21:34:34] 2026-01-12 20:34:34,040 [wrapper] pandaids: 6966861666
[2026-01-12 21:34:34] 2026-01-12 20:34:34,058 [wrapper] cleanup supervisor_pilot 3901311 3834153
[2026-01-12 21:34:34] 2026-01-12 20:34:34,061 [wrapper] Test setup, not cleaning
[2026-01-12 21:34:34] 2026-01-12 20:34:34,064 [wrapper] apfmon messages muted
[2026-01-12 21:34:34] 2026-01-12 20:34:34,066 [wrapper] ==== wrapper stdout END ====
[2026-01-12 21:34:34] 2026-01-12 20:34:34,069 [wrapper] ==== wrapper stderr END ====
[2026-01-12 21:34:34]  *** Error codes and diagnostics ***
[2026-01-12 21:34:34]     "exeErrorCode": 0,
[2026-01-12 21:34:34]     "exeErrorDiag": "",
[2026-01-12 21:34:34]     "pilotErrorCode": 0,
[2026-01-12 21:34:34]     "pilotErrorDiag": "",
[2026-01-12 21:34:34]  *** Listing of results directory ***
[2026-01-12 21:34:34] total 1473268
[2026-01-12 21:34:34] -rw-r--r-- 1 boinc boinc     579449 Jan 12 09:50 pilot3.tar.gz
[2026-01-12 21:34:34] -rw-r--r-- 1 boinc boinc       5112 Jan 12 09:56 queuedata.json
[2026-01-12 21:34:34] -rwx------ 1 boinc boinc      36322 Jan 12 09:57 runpilot2-wrapper.sh
[2026-01-12 21:34:34] -rw-r--r-- 1 boinc boinc        100 Jan 12 11:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 21:34:34] -rwxr-xr-x 1 boinc boinc       7986 Jan 12 11:59 run_atlas
[2026-01-12 21:34:34] -rw-r--r-- 1 boinc boinc        105 Jan 12 11:59 job.xml
[2026-01-12 21:34:34] -rw-r--r-- 2 boinc boinc  319534141 Jan 12 11:59 EVNT.48118027._000231.pool.root.1
[2026-01-12 21:34:34] -rw-r--r-- 2 boinc boinc     592613 Jan 12 11:59 input.tar.gz
[2026-01-12 21:34:34] -rw-r--r-- 2 boinc boinc      15847 Jan 12 11:59 start_atlas.sh
[2026-01-12 21:34:34] drwxrwx--x 2 boinc boinc       4096 Jan 12 11:59 shared
[2026-01-12 21:34:34] -rw-r--r-- 1 boinc boinc          0 Jan 12 11:59 boinc_setup_complete
[2026-01-12 21:34:34] -rw-r--r-- 1 boinc boinc       6450 Jan 12 11:59 init_data.xml
[2026-01-12 21:34:34] -rw-r--r-- 1 boinc boinc          0 Jan 12 11:59 boinc_lockfile
[2026-01-12 21:34:34] -rw-r--r-- 1 boinc boinc       2897 Jan 12 11:59 pandaJob.out
[2026-01-12 21:34:34] -rw------- 1 boinc boinc     987696 Jan 12 11:59 agis_schedconf.cvmfs.json
[2026-01-12 21:34:34] drwx------ 5 boinc boinc       4096 Jan 12 11:59 pilot3
[2026-01-12 21:34:34] -rw-r--r-- 1 boinc boinc        533 Jan 12 21:30 boinc_task_state.xml
[2026-01-12 21:34:34] -rw------- 1 boinc boinc 1172569344 Jan 12 21:33 HITS.48187943._001124.pool.root.1
[2026-01-12 21:34:34] -rw------- 1 boinc boinc       1021 Jan 12 21:33 memory_monitor_summary.json
[2026-01-12 21:34:34] -rw------- 1 boinc boinc         95 Jan 12 21:33 pilot_heartbeat.json
[2026-01-12 21:34:34] -rw------- 1 boinc boinc    1516240 Jan 12 21:33 agis_ddmendpoints.agis.ALL.json
[2026-01-12 21:34:34] -rw------- 1 boinc boinc    1450068 Jan 12 21:33 log.48187943._001124.job.log.tgz.1
[2026-01-12 21:34:34] -rw------- 1 boinc boinc      27971 Jan 12 21:33 heartbeat.json
[2026-01-12 21:34:34] -rw-r--r-- 1 boinc boinc       8192 Jan 12 21:34 boinc_mmap_file
[2026-01-12 21:34:34] -rw-r--r-- 1 boinc boinc         29 Jan 12 21:34 wrapper_checkpoint.txt
[2026-01-12 21:34:34] -rw------- 1 boinc boinc       4752 Jan 12 21:34 pilotlog.txt
[2026-01-12 21:34:34] -rw------- 1 boinc boinc    4840578 Jan 12 21:34 log.48187943._001124.job.log.1
[2026-01-12 21:34:34] -rw------- 1 boinc boinc        353 Jan 12 21:34 output.list
[2026-01-12 21:34:34] -rw-r--r-- 1 boinc boinc        620 Jan 12 21:34 runtime_log
[2026-01-12 21:34:34] -rw------- 1 boinc boinc    6328320 Jan 12 21:34 result.tar.gz
[2026-01-12 21:34:34] -rw------- 1 boinc boinc        671 Jan 12 21:34 xJsMDmwuSz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUKnKDmK4vV7n.diag
[2026-01-12 21:34:34] -rw-r--r-- 1 boinc boinc       8918 Jan 12 21:34 runtime_log.err
[2026-01-12 21:34:34] -rw-r--r-- 1 boinc boinc      11821 Jan 12 21:34 stderr.txt
[2026-01-12 21:34:34] HITS file was successfully produced:
[2026-01-12 21:34:34] -rw------- 1 boinc boinc 1172569344 Jan 12 21:33 shared/HITS.pool.root.1
[2026-01-12 21:34:34]  *** Contents of shared directory: ***
[2026-01-12 21:34:34] total 1463920
[2026-01-12 21:34:34] -rw-r--r-- 2 boinc boinc  319534141 Jan 12 11:59 ATLAS.root_0
[2026-01-12 21:34:34] -rw-r--r-- 2 boinc boinc     592613 Jan 12 11:59 input.tar.gz
[2026-01-12 21:34:34] -rw-r--r-- 2 boinc boinc      15847 Jan 12 11:59 start_atlas.sh
[2026-01-12 21:34:34] -rw------- 1 boinc boinc 1172569344 Jan 12 21:33 HITS.pool.root.1
[2026-01-12 21:34:34] -rw------- 1 boinc boinc    6328320 Jan 12 21:34 result.tar.gz
21:34:35 (3829864): run_atlas exited; CPU time 101984.296388
21:34:35 (3829864): called boinc_finish(0)

</stderr_txt>
]]>

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