Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
12:28:44 (1141893): wrapper (7.7.26015): starting
12:28:44 (1141893): wrapper: running run_atlas (--nthreads 4)
[2026-01-12 12:28:44] Arguments: --nthreads 4
[2026-01-12 12:28:44] Threads: 4
[2026-01-12 12:28:44] Checking for CVMFS
[2026-01-12 12:28:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 12:28:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 12:28:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 12:28:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 12:28:45] 2.13.3.0 3346151 4881 9684 155049 0 1 32878310 33554433 0 130560 0 2309117 99.989 167425 220 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-01-12 12:28:45] CVMFS is ok
[2026-01-12 12:28:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 12:28:45] Checking for apptainer binary...
[2026-01-12 12:28:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 12:28:45] Running /usr/bin/apptainer --version
[2026-01-12 12:28:45] apptainer version 1.4.4
[2026-01-12 12:28:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 12:28:45] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-01-12 12:28:45] apptainer works
[2026-01-12 12:28:45] Set ATHENA_PROC_NUMBER=4
[2026-01-12 12:28:45] Set ATHENA_CORE_NUMBER=4
[2026-01-12 12:28:45] Starting ATLAS job with PandaID=6966861075
[2026-01-12 12:28:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 19:29:45]  *** The last 200 lines of the pilot log: ***
[2026-01-12 19:29:45] 2026-01-12 17:29:03,011 | WARNING  | process 1184078 can no longer be monitored (due to stat problems) - aborting
[2026-01-12 19:29:45] 2026-01-12 17:29:03,011 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6966861075/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 19:29:45] 2026-01-12 17:29:03,013 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6966861075/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 19:29:45] 2026-01-12 17:29:03,013 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-12 19:29:45] 2026-01-12 17:29:03,013 | WARNING  | maxPSS not found in memory monitor output
[2026-01-12 19:29:45] 2026-01-12 17:29:03,013 | INFO     | payload log (log.HITSMergeAthenaMP0) within allowed size limit (2147483648 B): 203073 B
[2026-01-12 19:29:45] 2026-01-12 17:29:03,013 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3441993 B
[2026-01-12 19:29:45] 2026-01-12 17:29:03,013 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 121734 B
[2026-01-12 19:29:45] 2026-01-12 17:29:03,013 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-01-12 19:29:45] 2026-01-12 17:29:04,792 | INFO     | time since job start (25206s) is within the limit (349056.0s)
[2026-01-12 19:29:45] 2026-01-12 17:29:05,858 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-12 19:29:45] 2026-01-12 17:29:05,863 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 3874.124625
[2026-01-12 19:29:45] 2026-01-12 17:29:05,865 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6966861075/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 19:29:45] 2026-01-12 17:29:05,865 | INFO     | extracted standard info from prmon json
[2026-01-12 19:29:45] 2026-01-12 17:29:05,865 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 19:29:45] 2026-01-12 17:29:05,865 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 19:29:45] 2026-01-12 17:29:05,867 | INFO     | fitting pss+swap vs Time
[2026-01-12 19:29:45] 2026-01-12 17:29:05,868 | INFO     | sum of square deviations: 21843691422.0
[2026-01-12 19:29:45] 2026-01-12 17:29:05,869 | INFO     | sum of deviations: 4752117170736.003
[2026-01-12 19:29:45] 2026-01-12 17:29:05,869 | INFO     | mean x: 1768226325.0
[2026-01-12 19:29:45] 2026-01-12 17:29:05,869 | INFO     | mean y: 4972906.4963680385
[2026-01-12 19:29:45] 2026-01-12 17:29:05,869 | INFO     | intersect: -384674453223.6939
[2026-01-12 19:29:45] 2026-01-12 17:29:05,869 | INFO     | chi2: 15.79477343958588
[2026-01-12 19:29:45] 2026-01-12 17:29:05,870 | INFO     | sum of square deviations: 21059899982.0
[2026-01-12 19:29:45] 2026-01-12 17:29:05,871 | INFO     | sum of deviations: 4908947484089.499
[2026-01-12 19:29:45] 2026-01-12 17:29:05,871 | INFO     | mean x: 1768226172.5
[2026-01-12 19:29:45] 2026-01-12 17:29:05,871 | INFO     | mean y: 5003247.8799019605
[2026-01-12 19:29:45] 2026-01-12 17:29:05,871 | INFO     | intersect: -412158845023.6708
[2026-01-12 19:29:45] 2026-01-12 17:29:05,871 | INFO     | chi2: 12.765235443927283
[2026-01-12 19:29:45] 2026-01-12 17:29:05,871 | INFO     | current chi2=12.765235443927283 (change=19.180635969527575 %)
[2026-01-12 19:29:45] 2026-01-12 17:29:05,871 | INFO     | right removable region: 407
[2026-01-12 19:29:45] 2026-01-12 17:29:05,872 | INFO     | sum of square deviations: 21059899982.0
[2026-01-12 19:29:45] 2026-01-12 17:29:05,873 | INFO     | sum of deviations: 4530544849043.5
[2026-01-12 19:29:45] 2026-01-12 17:29:05,873 | INFO     | mean x: 1768226477.5
[2026-01-12 19:29:45] 2026-01-12 17:29:05,873 | INFO     | mean y: 5015934.06127451
[2026-01-12 19:29:45] 2026-01-12 17:29:05,873 | INFO     | intersect: -380387548438.37274
[2026-01-12 19:29:45] 2026-01-12 17:29:05,873 | INFO     | chi2: 14.095067072930187
[2026-01-12 19:29:45] 2026-01-12 17:29:05,873 | INFO     | current chi2=14.095067072930187 (change=10.761194981092794 %)
[2026-01-12 19:29:45] 2026-01-12 17:29:05,873 | INFO     | left removable region: 10
[2026-01-12 19:29:45] 2026-01-12 17:29:05,873 | INFO     | sum of square deviations: 19402030758.0
[2026-01-12 19:29:45] 2026-01-12 17:29:05,875 | INFO     | sum of deviations: 4526592034190.0
[2026-01-12 19:29:45] 2026-01-12 17:29:05,875 | INFO     | mean x: 1768226447.0
[2026-01-12 19:29:45] 2026-01-12 17:29:05,875 | INFO     | mean y: 5070567.574307305
[2026-01-12 19:29:45] 2026-01-12 17:29:05,875 | INFO     | intersect: -412531114405.4341
[2026-01-12 19:29:45] 2026-01-12 17:29:05,875 | INFO     | chi2: 10.697778797025366
[2026-01-12 19:29:45] 2026-01-12 17:29:05,875 | INFO     | current memory leak: 233.31 B/s (using 397 data points, chi2=10.70)
[2026-01-12 19:29:45] 2026-01-12 17:29:05,875 | INFO     | could have reported an average CPU frequency of 4265 MHz (17 samples)
[2026-01-12 19:29:45] 2026-01-12 17:29:05,876 | INFO     | ..............................
[2026-01-12 19:29:45] 2026-01-12 17:29:05,876 | INFO     | . Timing measurements:
[2026-01-12 19:29:45] 2026-01-12 17:29:05,876 | INFO     | . get job = 0 s
[2026-01-12 19:29:45] 2026-01-12 17:29:05,876 | INFO     | . initial setup = 1 s
[2026-01-12 19:29:45] 2026-01-12 17:29:05,876 | INFO     | . payload setup = 5 s
[2026-01-12 19:29:45] 2026-01-12 17:29:05,876 | INFO     | . stage-in = 0 s
[2026-01-12 19:29:45] 2026-01-12 17:29:05,876 | INFO     | . payload execution = 25177 s
[2026-01-12 19:29:45] 2026-01-12 17:29:05,876 | INFO     | . stage-out = 1 s
[2026-01-12 19:29:45] 2026-01-12 17:29:05,876 | INFO     | . log creation = 0 s
[2026-01-12 19:29:45] 2026-01-12 17:29:05,876 | INFO     | ..............................
[2026-01-12 19:29:45] 2026-01-12 17:29:05,876 | INFO     | sufficient remaining disk space (48506077184 B)
[2026-01-12 19:29:45] 2026-01-12 17:29:05,877 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-12 19:29:45] 2026-01-12 17:29:05,907 | INFO     | 
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | job summary report
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | --------------------------------------------------
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | PanDA job id: 6966861075
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | task id: 48187943
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | errors: (none)
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | pilot state: finished 
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | transexitcode: 0
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | exeerrorcode: 0
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | exeerrordiag: 
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | exitcode: 0
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | exitmsg: OK
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | cpuconsumptiontime: 98833 s
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | nevents: 2050
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | neventsw: 0
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | pid: 1184078
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | pgrp: 1184078
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | corecount: 4
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | event service: False
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | sizes: {0: 2284623, 2: 2284885, 11: 2284913, 25185: 2340833, 25187: 2349887, 25194: 2350141}
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | --------------------------------------------------
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | 
[2026-01-12 19:29:45] 2026-01-12 17:29:05,908 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2026-01-12 19:29:45] 2026-01-12 17:29:05,912 | INFO     | size of work directory /home/ek/BOINC/slots/1/PanDA_Pilot-6966861075: 8355446 B (within 4404019200 B limit)
[2026-01-12 19:29:45] 2026-01-12 17:29:05,912 | INFO     | pfn file=/home/ek/BOINC/slots/1/PanDA_Pilot-6966861075/HITS.48187943._001037.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-12 19:29:45] 2026-01-12 17:29:05,912 | INFO     | total size of present files: 0 B (workdir size: 8355446 B)
[2026-01-12 19:29:45] 2026-01-12 17:29:05,912 | INFO     | output file size check: skipping output file /home/ek/BOINC/slots/1/PanDA_Pilot-6966861075/HITS.48187943._001037.pool.root.1 since it does not exist
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 19:29:45] 2026-01-12 17:29:05,916 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,917 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 19:29:45] 2026-01-12 17:29:05,917 | INFO     | job 6966861075 has completed (purged errors)
[2026-01-12 19:29:45] 2026-01-12 17:29:05,917 | INFO     | overall cleanup function is called
[2026-01-12 19:29:45] 2026-01-12 17:29:06,013 | INFO     | number of running child processes to parent process 1184078: 1
[2026-01-12 19:29:45] 2026-01-12 17:29:06,013 | INFO     | maximum number of monitored processes: 10
[2026-01-12 19:29:45] 2026-01-12 17:29:06,013 | INFO     | aborting job monitoring since job object (job id=6966861075) has expired
[2026-01-12 19:29:45] 2026-01-12 17:29:06,929 | INFO     | --- collectZombieJob: --- 10, [1184078]
[2026-01-12 19:29:45] 2026-01-12 17:29:06,929 | INFO     | zombie collector waiting for pid 1184078
[2026-01-12 19:29:45] 2026-01-12 17:29:06,929 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 19:29:45] 2026-01-12 17:29:06,929 | INFO     | collected zombie processes
[2026-01-12 19:29:45] 2026-01-12 17:29:06,929 | INFO     | will attempt to kill all subprocesses of pid=1184078
[2026-01-12 19:29:45] 2026-01-12 17:29:07,021 | INFO     | process IDs to be killed: [1184078] (in reverse order)
[2026-01-12 19:29:45] 2026-01-12 17:29:07,052 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 19:29:45] 2026-01-12 17:29:07,052 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 19:29:45] 2026-01-12 17:29:07,055 | INFO     | did not find any defunct processes belonging to 1184078
[2026-01-12 19:29:45] 2026-01-12 17:29:07,057 | INFO     | did not find any defunct processes belonging to 1184078
[2026-01-12 19:29:45] 2026-01-12 17:29:07,057 | INFO     | ready for new job
[2026-01-12 19:29:45] 2026-01-12 17:29:07,057 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 19:29:45] 2026-01-12 17:29:07,058 | INFO     | ***************************************
[2026-01-12 19:29:45] 2026-01-12 17:29:07,058 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 19:29:45] 2026-01-12 17:29:07,058 | INFO     | ***************************************
[2026-01-12 19:29:45] 2026-01-12 17:29:07,058 | INFO     | 
[2026-01-12 19:29:45] 2026-01-12 17:29:07,059 | INFO     | architecture information:
[2026-01-12 19:29:45] 2026-01-12 17:29:07,059 | INFO     | executing command: cat /etc/os-release
[2026-01-12 19:29:45] 2026-01-12 17:29:07,065 | INFO     | cat /etc/os-release:
[2026-01-12 19:29:45] NAME="CentOS Linux"
[2026-01-12 19:29:45] VERSION="7 (Core)"
[2026-01-12 19:29:45] ID="centos"
[2026-01-12 19:29:45] ID_LIKE="rhel fedora"
[2026-01-12 19:29:45] VERSION_ID="7"
[2026-01-12 19:29:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 19:29:45] ANSI_COLOR="0;31"
[2026-01-12 19:29:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 19:29:45] HOME_URL="https://www.centos.org/"
[2026-01-12 19:29:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 19:29:45] 
[2026-01-12 19:29:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 19:29:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 19:29:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 19:29:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 19:29:45] 
[2026-01-12 19:29:45] 2026-01-12 17:29:07,065 | INFO     | ***************************************
[2026-01-12 19:29:45] 2026-01-12 17:29:07,568 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-01-12 19:29:45] 2026-01-12 17:29:07,576 | INFO     | sufficient remaining disk space (48517611520 B)
[2026-01-12 19:29:45] 2026-01-12 17:29:07,576 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 19:29:45] 2026-01-12 17:29:07,576 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 19:29:45] 2026-01-12 17:29:07,576 | INFO     | update_server=False
[2026-01-12 19:29:45] 2026-01-12 17:29:07,576 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 19:29:45] 2026-01-12 17:29:07,576 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 19:29:45] 2026-01-12 17:29:07,576 | INFO     | aborting loop
[2026-01-12 19:29:45] 2026-01-12 17:29:07,577 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 19:29:45] 2026-01-12 17:29:07,577 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 19:29:45] 2026-01-12 17:29:07,728 | INFO     | all payload control threads have been joined
[2026-01-12 19:29:45] 2026-01-12 17:29:07,953 | INFO     | all data control threads have been joined
[2026-01-12 19:29:45] 2026-01-12 17:29:08,581 | INFO     | [job] retrieve thread has finished
[2026-01-12 19:29:45] 2026-01-12 17:29:08,582 | INFO     | [job] job monitor thread has finished
[2026-01-12 19:29:45] 2026-01-12 17:29:08,582 | INFO     | [job] queue monitor thread has finished
[2026-01-12 19:29:45] 2026-01-12 17:29:08,669 | INFO     | [payload] failed_post thread has finished
[2026-01-12 19:29:45] 2026-01-12 17:29:08,734 | INFO     | [payload] control thread has finished
[2026-01-12 19:29:45] 2026-01-12 17:29:08,959 | INFO     | [data] control thread has finished
[2026-01-12 19:29:45] 2026-01-12 17:29:09,143 | INFO     | all job control threads have been joined
[2026-01-12 19:29:45] 2026-01-12 17:29:09,197 | INFO     | [payload] validate_post thread has finished
[2026-01-12 19:29:45] 2026-01-12 17:29:09,200 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 19:29:45] 2026-01-12 17:29:09,214 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 19:29:45] 2026-01-12 17:29:09,489 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 19:29:45] 2026-01-12 17:29:09,508 | INFO     | [job] validate thread has finished
[2026-01-12 19:29:45] 2026-01-12 17:29:09,531 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 19:29:45] 2026-01-12 17:29:09,582 | INFO     | [data] copytool_out thread has finished
[2026-01-12 19:29:45] 2026-01-12 17:29:09,913 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 19:29:45] 2026-01-12 17:29:10,045 | INFO     | [data] copytool_in thread has finished
[2026-01-12 19:29:45] 2026-01-12 17:29:10,148 | INFO     | [job] control thread has finished
[2026-01-12 19:29:45] 2026-01-12 17:29:13,206 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 19:29:45] 2026-01-12 17:29:37,954 | INFO     | PID=1156950 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-12 19:29:45] 2026-01-12 17:29:37,954 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 19:29:45] 2026-01-12 17:29:37,954 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 19:29:45] 2026-01-12 17:29:37,954 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 19:29:45] 2026-01-12 17:29:38,737 | INFO     | [monitor] cgroup control has ended
[2026-01-12 19:29:45] 2026-01-12 17:29:40,167 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140438999484224)>', '<ExcThread(monitor, started 140438367360768)>']
[2026-01-12 19:29:45] 2026-01-12 17:29:40,970 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 19:29:45] 2026-01-12 17:29:40,970 | INFO     | [monitor] control thread has ended
[2026-01-12 19:29:45] 2026-01-12 17:29:45,193 | INFO     | all workflow threads have been joined
[2026-01-12 19:29:45] 2026-01-12 17:29:45,193 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 19:29:45] 2026-01-12 17:29:45,195 | INFO     | traces error code: 0
[2026-01-12 19:29:45] 2026-01-12 17:29:45,195 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 19:29:45] 2026-01-12 17:29:45,293 [wrapper] ==== pilot stdout END ====
[2026-01-12 19:29:45] 2026-01-12 17:29:45,295 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 19:29:45] 2026-01-12 17:29:45,296 [wrapper] pilotpid: 1156950
[2026-01-12 19:29:45] 2026-01-12 17:29:45,297 [wrapper] Pilot exit status: 0
[2026-01-12 19:29:45] 2026-01-12 17:29:45,303 [wrapper] pandaids: 6966861075
[2026-01-12 19:29:45] 2026-01-12 17:29:45,325 [wrapper] cleanup supervisor_pilot 4030085 1156951
[2026-01-12 19:29:45] 2026-01-12 17:29:45,327 [wrapper] Test setup, not cleaning
[2026-01-12 19:29:45] 2026-01-12 17:29:45,328 [wrapper] apfmon messages muted
[2026-01-12 19:29:45] 2026-01-12 17:29:45,330 [wrapper] ==== wrapper stdout END ====
[2026-01-12 19:29:45] 2026-01-12 17:29:45,331 [wrapper] ==== wrapper stderr END ====
[2026-01-12 19:29:45]  *** Error codes and diagnostics ***
[2026-01-12 19:29:45]     "exeErrorCode": 0,
[2026-01-12 19:29:45]     "exeErrorDiag": "",
[2026-01-12 19:29:45]     "pilotErrorCode": 0,
[2026-01-12 19:29:45]     "pilotErrorDiag": "",
[2026-01-12 19:29:45]  *** Listing of results directory ***
[2026-01-12 19:29:45] total 1484184
[2026-01-12 19:29:45] -rw-r--r-- 1 ek ek     579449 Jan 12 10:50 pilot3.tar.gz
[2026-01-12 19:29:45] -rwx------ 1 ek ek      36322 Jan 12 10:56 runpilot2-wrapper.sh
[2026-01-12 19:29:45] -rw-r--r-- 1 ek ek       5112 Jan 12 10:56 queuedata.json
[2026-01-12 19:29:45] -rw-rw-r-- 1 ek ek        100 Jan 12 12:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 19:29:45] -rwxr-xr-x 1 ek ek       7986 Jan 12 12:28 run_atlas
[2026-01-12 19:29:45] -rw-rw-r-- 1 ek ek        105 Jan 12 12:28 job.xml
[2026-01-12 19:29:45] -rw-r--r-- 2 ek ek  322807702 Jan 12 12:28 EVNT.48118027._000213.pool.root.1
[2026-01-12 19:29:45] -rw-r--r-- 2 ek ek     592605 Jan 12 12:28 input.tar.gz
[2026-01-12 19:29:45] -rw-r--r-- 2 ek ek      15847 Jan 12 12:28 start_atlas.sh
[2026-01-12 19:29:45] drwxrwx--x 2 ek ek       4096 Jan 12 12:28 shared
[2026-01-12 19:29:45] -rw-rw-r-- 1 ek ek          0 Jan 12 12:28 boinc_setup_complete
[2026-01-12 19:29:45] -rw-rw-r-- 1 ek ek       9841 Jan 12 12:28 init_data.xml
[2026-01-12 19:29:45] -rw-rw-r-- 1 ek ek          0 Jan 12 12:28 boinc_lockfile
[2026-01-12 19:29:45] -rw-rw-r-- 1 ek ek       2897 Jan 12 12:28 pandaJob.out
[2026-01-12 19:29:45] -rw------- 1 ek ek         50 Jan 12 12:28 setup.sh.local
[2026-01-12 19:29:45] -rw------- 1 ek ek     987696 Jan 12 12:28 agis_schedconf.cvmfs.json
[2026-01-12 19:29:45] drwx------ 5 ek ek       4096 Jan 12 12:28 pilot3
[2026-01-12 19:29:45] -rw-rw-r-- 1 ek ek        531 Jan 12 19:25 boinc_task_state.xml
[2026-01-12 19:29:45] -rw------- 1 ek ek 1182996150 Jan 12 19:28 HITS.48187943._001037.pool.root.1
[2026-01-12 19:29:45] -rw------- 1 ek ek       1060 Jan 12 19:28 memory_monitor_summary.json
[2026-01-12 19:29:45] -rw------- 1 ek ek    1516240 Jan 12 19:28 agis_ddmendpoints.agis.ALL.json
[2026-01-12 19:29:45] -rw------- 1 ek ek    1499696 Jan 12 19:28 log.48187943._001037.job.log.tgz.1
[2026-01-12 19:29:45] -rw------- 1 ek ek      27556 Jan 12 19:29 heartbeat.json
[2026-01-12 19:29:45] -rw-rw-r-- 1 ek ek       8192 Jan 12 19:29 boinc_mmap_file
[2026-01-12 19:29:45] -rw-rw-r-- 1 ek ek         28 Jan 12 19:29 wrapper_checkpoint.txt
[2026-01-12 19:29:45] -rw------- 1 ek ek         95 Jan 12 19:29 pilot_heartbeat.json
[2026-01-12 19:29:45] -rw------- 1 ek ek       4748 Jan 12 19:29 pilotlog.txt
[2026-01-12 19:29:45] -rw------- 1 ek ek    3516190 Jan 12 19:29 log.48187943._001037.job.log.1
[2026-01-12 19:29:45] -rw------- 1 ek ek        353 Jan 12 19:29 output.list
[2026-01-12 19:29:45] -rw-rw-r-- 1 ek ek        620 Jan 12 19:29 runtime_log
[2026-01-12 19:29:45] -rw------- 1 ek ek    5058560 Jan 12 19:29 result.tar.gz
[2026-01-12 19:29:45] -rw-rw-r-- 1 ek ek       9503 Jan 12 19:29 runtime_log.err
[2026-01-12 19:29:45] -rw------- 1 ek ek        674 Jan 12 19:29 mmdNDmxtSz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOJnKDmReh1hm.diag
[2026-01-12 19:29:45] -rw-rw-r-- 1 ek ek      21737 Jan 12 19:29 stderr.txt
[2026-01-12 19:29:45] HITS file was successfully produced:
[2026-01-12 19:29:45] -rw------- 1 ek ek 1182996150 Jan 12 19:28 shared/HITS.pool.root.1
[2026-01-12 19:29:45]  *** Contents of shared directory: ***
[2026-01-12 19:29:45] total 1476060
[2026-01-12 19:29:45] -rw-r--r-- 2 ek ek  322807702 Jan 12 12:28 ATLAS.root_0
[2026-01-12 19:29:45] -rw-r--r-- 2 ek ek     592605 Jan 12 12:28 input.tar.gz
[2026-01-12 19:29:45] -rw-r--r-- 2 ek ek      15847 Jan 12 12:28 start_atlas.sh
[2026-01-12 19:29:45] -rw------- 1 ek ek 1182996150 Jan 12 19:28 HITS.pool.root.1
[2026-01-12 19:29:45] -rw------- 1 ek ek    5058560 Jan 12 19:29 result.tar.gz
19:29:47 (1141893): run_atlas exited; CPU time 98961.604238
19:29:47 (1141893): called boinc_finish(0)

</stderr_txt>
]]>

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