Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:04:26 (823937): wrapper (7.7.26015): starting
06:04:26 (823937): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 06:04:26] Arguments: --nthreads 8
[2026-01-12 06:04:26] Threads: 8
[2026-01-12 06:04:26] Checking for CVMFS
[2026-01-12 06:04:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 06:04:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 06:04:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 06:04:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 06:04:26] 2.13.3.0 5924 25745 197808 155049 3 362 26482954 39288832 10125 16776704 0 11579872 99.581 16820146 41510 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 06:04:26] CVMFS is ok
[2026-01-12 06:04:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 06:04:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 06:04:26] Further information can be found at the LHC@home message board.
[2026-01-12 06:04:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 06:04:26] Checking for apptainer binary...
[2026-01-12 06:04:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 06:04:26] Running /usr/bin/apptainer --version
[2026-01-12 06:04:26] apptainer version 1.4.5-2.el9
[2026-01-12 06:04:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 06:04:26] c-210-3.aglt2.org
[2026-01-12 06:04:26] apptainer works
[2026-01-12 06:04:26] Set ATHENA_PROC_NUMBER=8
[2026-01-12 06:04:26] Set ATHENA_CORE_NUMBER=8
[2026-01-12 06:04:27] Starting ATLAS job with PandaID=6966863552
[2026-01-12 06:04:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 16:37:42]  *** The last 200 lines of the pilot log: ***
[2026-01-13 16:37:42] 2026-01-13 21:36:44,951 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 16:37:42] 2026-01-13 21:36:44,951 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 16:37:42] 2026-01-13 21:36:44,987 | INFO     | fitting pss+swap vs Time
[2026-01-13 16:37:42] 2026-01-13 21:36:44,990 | INFO     | sum of square deviations: 2624612307463.6123
[2026-01-13 16:37:42] 2026-01-13 21:36:45,091 | INFO     | sum of deviations: 15951651803763.014
[2026-01-13 16:37:42] 2026-01-13 21:36:45,092 | INFO     | mean x: 1768278055.469578
[2026-01-13 16:37:42] 2026-01-13 21:36:45,092 | INFO     | mean y: 3448155.5893032383
[2026-01-13 16:37:42] 2026-01-13 21:36:45,092 | INFO     | intersect: -10743646092.530201
[2026-01-13 16:37:42] 2026-01-13 21:36:45,095 | INFO     | chi2: 9.963647342898616
[2026-01-13 16:37:42] 2026-01-13 21:36:45,098 | INFO     | sum of square deviations: 2605343427457.13
[2026-01-13 16:37:42] 2026-01-13 21:36:45,191 | INFO     | sum of deviations: 16781732133053.564
[2026-01-13 16:37:42] 2026-01-13 21:36:45,192 | INFO     | mean x: 1768277902.9793408
[2026-01-13 16:37:42] 2026-01-13 21:36:45,192 | INFO     | mean y: 3454724.0363994096
[2026-01-13 16:37:42] 2026-01-13 21:36:45,192 | INFO     | intersect: -11386508607.423582
[2026-01-13 16:37:42] 2026-01-13 21:36:45,195 | INFO     | chi2: 6.692926054709506
[2026-01-13 16:37:42] 2026-01-13 21:36:45,195 | INFO     | current chi2=6.692926054709506 (change=32.82654609930819 %)
[2026-01-13 16:37:42] 2026-01-13 21:36:45,198 | INFO     | sum of square deviations: 2586169107362.762
[2026-01-13 16:37:42] 2026-01-13 21:36:45,291 | INFO     | sum of deviations: 17452294702877.291
[2026-01-13 16:37:42] 2026-01-13 21:36:45,292 | INFO     | mean x: 1768277750.489152
[2026-01-13 16:37:42] 2026-01-13 21:36:45,292 | INFO     | mean y: 3460053.626725838
[2026-01-13 16:37:42] 2026-01-13 21:36:45,292 | INFO     | intersect: -11929442682.786942
[2026-01-13 16:37:42] 2026-01-13 21:36:45,295 | INFO     | chi2: 4.045702763819253
[2026-01-13 16:37:42] 2026-01-13 21:36:45,295 | INFO     | current chi2=4.045702763819253 (change=39.55255547799641 %)
[2026-01-13 16:37:42] 2026-01-13 21:36:45,298 | INFO     | sum of square deviations: 2567085527244.5283
[2026-01-13 16:37:42] 2026-01-13 21:36:45,391 | INFO     | sum of deviations: 17446253603577.15
[2026-01-13 16:37:42] 2026-01-13 21:36:45,391 | INFO     | mean x: 1768277597.9846761
[2026-01-13 16:37:42] 2026-01-13 21:36:45,391 | INFO     | mean y: 3460004.617399901
[2026-01-13 16:37:42] 2026-01-13 21:36:45,391 | INFO     | intersect: -12013989000.70602
[2026-01-13 16:37:42] 2026-01-13 21:36:45,394 | INFO     | chi2: 3.978229391894251
[2026-01-13 16:37:42] 2026-01-13 21:36:45,395 | INFO     | current chi2=3.978229391894251 (change=1.6677787732805385 %)
[2026-01-13 16:37:42] 2026-01-13 21:36:45,395 | INFO     | right removable region: 2022
[2026-01-13 16:37:42] 2026-01-13 21:36:45,397 | INFO     | sum of square deviations: 2605338492557.133
[2026-01-13 16:37:42] 2026-01-13 21:36:45,430 | INFO     | time since job start (124323s) is within the limit (349056.0s)
[2026-01-13 16:37:42] 2026-01-13 21:36:45,492 | INFO     | sum of deviations: 15071365799149.453
[2026-01-13 16:37:42] 2026-01-13 21:36:45,492 | INFO     | mean x: 1768278207.9793408
[2026-01-13 16:37:42] 2026-01-13 21:36:45,492 | INFO     | mean y: 3455120.129857354
[2026-01-13 16:37:42] 2026-01-13 21:36:45,493 | INFO     | intersect: -10225683160.08027
[2026-01-13 16:37:42] 2026-01-13 21:36:45,495 | INFO     | chi2: 6.737041518073421
[2026-01-13 16:37:42] 2026-01-13 21:36:45,496 | INFO     | current chi2=6.737041518073421 (change=32.38378190015819 %)
[2026-01-13 16:37:42] 2026-01-13 21:36:45,498 | INFO     | sum of square deviations: 2586159485358.717
[2026-01-13 16:37:42] 2026-01-13 21:36:45,592 | INFO     | sum of deviations: 14758166637909.086
[2026-01-13 16:37:42] 2026-01-13 21:36:45,592 | INFO     | mean x: 1768278360.4881656
[2026-01-13 16:37:42] 2026-01-13 21:36:45,592 | INFO     | mean y: 3457608.857495069
[2026-01-13 16:37:42] 2026-01-13 21:36:45,592 | INFO     | intersect: -10087392106.34221
[2026-01-13 16:37:42] 2026-01-13 21:36:45,595 | INFO     | chi2: 6.348236300886435
[2026-01-13 16:37:42] 2026-01-13 21:36:45,595 | INFO     | current chi2=6.348236300886435 (change=5.771156614426983 %)
[2026-01-13 16:37:42] 2026-01-13 21:36:45,596 | INFO     | left removable region: 20
[2026-01-13 16:37:42] 2026-01-13 21:36:45,598 | INFO     | sum of square deviations: 2487955520481.7026
[2026-01-13 16:37:42] 2026-01-13 21:36:45,689 | INFO     | sum of deviations: 15856563399421.582
[2026-01-13 16:37:42] 2026-01-13 21:36:45,689 | INFO     | mean x: 1768278177.51998
[2026-01-13 16:37:42] 2026-01-13 21:36:45,689 | INFO     | mean y: 3472519.448051948
[2026-01-13 16:37:42] 2026-01-13 21:36:45,689 | INFO     | intersect: -11266349146.909758
[2026-01-13 16:37:42] 2026-01-13 21:36:45,692 | INFO     | chi2: 0.270307752909323
[2026-01-13 16:37:42] 2026-01-13 21:36:45,692 | INFO     | current memory leak: 6.37 B/s (using 2002 data points, chi2=0.27)
[2026-01-13 16:37:42] 2026-01-13 21:36:45,694 | INFO     | could have reported an average CPU frequency of 2599 MHz (71 samples)
[2026-01-13 16:37:42] 2026-01-13 21:36:45,694 | INFO     | ..............................
[2026-01-13 16:37:42] 2026-01-13 21:36:45,694 | INFO     | . Timing measurements:
[2026-01-13 16:37:42] 2026-01-13 21:36:45,694 | INFO     | . get job = 0 s
[2026-01-13 16:37:42] 2026-01-13 21:36:45,694 | INFO     | . initial setup = 3 s
[2026-01-13 16:37:42] 2026-01-13 21:36:45,694 | INFO     | . payload setup = 16 s
[2026-01-13 16:37:42] 2026-01-13 21:36:45,695 | INFO     | . stage-in = 0 s
[2026-01-13 16:37:42] 2026-01-13 21:36:45,695 | INFO     | . payload execution = 124267 s
[2026-01-13 16:37:42] 2026-01-13 21:36:45,695 | INFO     | . stage-out = 4 s
[2026-01-13 16:37:42] 2026-01-13 21:36:45,695 | INFO     | . log creation = 1 s
[2026-01-13 16:37:42] 2026-01-13 21:36:45,695 | INFO     | ..............................
[2026-01-13 16:37:42] 2026-01-13 21:36:45,799 | INFO     | 
[2026-01-13 16:37:42] 2026-01-13 21:36:45,799 | INFO     | job summary report
[2026-01-13 16:37:42] 2026-01-13 21:36:45,799 | INFO     | --------------------------------------------------
[2026-01-13 16:37:42] 2026-01-13 21:36:45,799 | INFO     | PanDA job id: 6966863552
[2026-01-13 16:37:42] 2026-01-13 21:36:45,800 | INFO     | task id: 48187943
[2026-01-13 16:37:42] 2026-01-13 21:36:45,800 | INFO     | errors: (none)
[2026-01-13 16:37:42] 2026-01-13 21:36:45,800 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 16:37:42] 2026-01-13 21:36:45,800 | INFO     | pilot state: finished 
[2026-01-13 16:37:42] 2026-01-13 21:36:45,800 | INFO     | transexitcode: 0
[2026-01-13 16:37:42] 2026-01-13 21:36:45,800 | INFO     | exeerrorcode: 0
[2026-01-13 16:37:42] 2026-01-13 21:36:45,800 | INFO     | exeerrordiag: 
[2026-01-13 16:37:42] 2026-01-13 21:36:45,800 | INFO     | exitcode: 0
[2026-01-13 16:37:42] 2026-01-13 21:36:45,800 | INFO     | exitmsg: OK
[2026-01-13 16:37:42] 2026-01-13 21:36:45,800 | INFO     | cpuconsumptiontime: 357204 s
[2026-01-13 16:37:42] 2026-01-13 21:36:45,800 | INFO     | nevents: 2050
[2026-01-13 16:37:42] 2026-01-13 21:36:45,801 | INFO     | neventsw: 0
[2026-01-13 16:37:42] 2026-01-13 21:36:45,801 | INFO     | pid: 835165
[2026-01-13 16:37:42] 2026-01-13 21:36:45,801 | INFO     | pgrp: 835165
[2026-01-13 16:37:42] 2026-01-13 21:36:45,801 | INFO     | corecount: 8
[2026-01-13 16:37:42] 2026-01-13 21:36:45,801 | INFO     | event service: False
[2026-01-13 16:37:42] 2026-01-13 21:36:45,801 | INFO     | sizes: {0: 2284452, 1: 2284651, 7: 2284913, 12: 2284941, 124288: 2387045, 124293: 2396227, 124306: 2396417}
[2026-01-13 16:37:42] 2026-01-13 21:36:45,801 | INFO     | --------------------------------------------------
[2026-01-13 16:37:42] 2026-01-13 21:36:45,801 | INFO     | 
[2026-01-13 16:37:42] 2026-01-13 21:36:45,801 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-13 16:37:42] 2026-01-13 21:36:45,961 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,961 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,961 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,962 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,962 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,962 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,962 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,962 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,962 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,962 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,962 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,962 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,962 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,963 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,963 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,963 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,963 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,963 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 16:37:42] 2026-01-13 21:36:45,963 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,963 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 16:37:42] 2026-01-13 21:36:45,963 | INFO     | job 6966863552 has completed (purged errors)
[2026-01-13 16:37:42] 2026-01-13 21:36:45,964 | INFO     | overall cleanup function is called
[2026-01-13 16:37:42] 2026-01-13 21:36:46,985 | INFO     | --- collectZombieJob: --- 10, [835165]
[2026-01-13 16:37:42] 2026-01-13 21:36:46,985 | INFO     | zombie collector waiting for pid 835165
[2026-01-13 16:37:42] 2026-01-13 21:36:46,985 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 16:37:42] 2026-01-13 21:36:46,985 | INFO     | collected zombie processes
[2026-01-13 16:37:42] 2026-01-13 21:36:46,985 | INFO     | will attempt to kill all subprocesses of pid=835165
[2026-01-13 16:37:42] 2026-01-13 21:36:47,295 | INFO     | process IDs to be killed: [835165] (in reverse order)
[2026-01-13 16:37:42] 2026-01-13 21:36:47,475 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 16:37:42] 2026-01-13 21:36:47,475 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 16:37:42] 2026-01-13 21:36:47,491 | INFO     | did not find any defunct processes belonging to 835165
[2026-01-13 16:37:42] 2026-01-13 21:36:47,498 | INFO     | did not find any defunct processes belonging to 835165
[2026-01-13 16:37:42] 2026-01-13 21:36:47,498 | INFO     | ready for new job
[2026-01-13 16:37:42] 2026-01-13 21:36:47,498 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 16:37:42] 2026-01-13 21:36:47,507 | INFO     | ***************************************
[2026-01-13 16:37:42] 2026-01-13 21:36:47,507 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 16:37:42] 2026-01-13 21:36:47,507 | INFO     | ***************************************
[2026-01-13 16:37:42] 2026-01-13 21:36:47,507 | INFO     | 
[2026-01-13 16:37:42] 2026-01-13 21:36:47,509 | INFO     | architecture information:
[2026-01-13 16:37:42] 2026-01-13 21:36:47,509 | INFO     | executing command: cat /etc/os-release
[2026-01-13 16:37:42] 2026-01-13 21:36:47,550 | INFO     | cat /etc/os-release:
[2026-01-13 16:37:42] NAME="CentOS Linux"
[2026-01-13 16:37:42] VERSION="7 (Core)"
[2026-01-13 16:37:42] ID="centos"
[2026-01-13 16:37:42] ID_LIKE="rhel fedora"
[2026-01-13 16:37:42] VERSION_ID="7"
[2026-01-13 16:37:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 16:37:42] ANSI_COLOR="0;31"
[2026-01-13 16:37:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 16:37:42] HOME_URL="https://www.centos.org/"
[2026-01-13 16:37:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 16:37:42] 
[2026-01-13 16:37:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 16:37:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 16:37:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 16:37:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 16:37:42] 
[2026-01-13 16:37:42] 2026-01-13 21:36:47,550 | INFO     | ***************************************
[2026-01-13 16:37:42] 2026-01-13 21:36:48,054 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-13 16:37:42] 2026-01-13 21:36:48,132 | INFO     | sufficient remaining disk space (52323942400 B)
[2026-01-13 16:37:42] 2026-01-13 21:36:48,132 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 16:37:42] 2026-01-13 21:36:48,133 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 16:37:42] 2026-01-13 21:36:48,133 | INFO     | update_server=False
[2026-01-13 16:37:42] 2026-01-13 21:36:48,133 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 16:37:42] 2026-01-13 21:36:48,133 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 16:37:42] 2026-01-13 21:36:48,133 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 16:37:42] 2026-01-13 21:36:48,134 | INFO     | aborting loop
[2026-01-13 16:37:42] 2026-01-13 21:36:48,427 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 16:37:42] 2026-01-13 21:36:48,789 | INFO     | all data control threads have been joined
[2026-01-13 16:37:42] 2026-01-13 21:36:48,977 | INFO     | all payload control threads have been joined
[2026-01-13 16:37:42] 2026-01-13 21:36:48,997 | INFO     | all job control threads have been joined
[2026-01-13 16:37:42] 2026-01-13 21:36:49,139 | INFO     | [job] retrieve thread has finished
[2026-01-13 16:37:42] 2026-01-13 21:36:49,140 | INFO     | [job] job monitor thread has finished
[2026-01-13 16:37:42] 2026-01-13 21:36:49,230 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 16:37:42] 2026-01-13 21:36:49,619 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 16:37:42] 2026-01-13 21:36:49,766 | INFO     | [data] copytool_in thread has finished
[2026-01-13 16:37:42] 2026-01-13 21:36:49,795 | INFO     | [data] control thread has finished
[2026-01-13 16:37:42] 2026-01-13 21:36:49,833 | INFO     | [payload] failed_post thread has finished
[2026-01-13 16:37:42] 2026-01-13 21:36:49,919 | INFO     | [payload] validate_post thread has finished
[2026-01-13 16:37:42] 2026-01-13 21:36:49,959 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 16:37:42] 2026-01-13 21:36:49,968 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 16:37:42] 2026-01-13 21:36:49,983 | INFO     | [payload] control thread has finished
[2026-01-13 16:37:42] 2026-01-13 21:36:50,004 | INFO     | [job] control thread has finished
[2026-01-13 16:37:42] 2026-01-13 21:36:50,337 | INFO     | [job] validate thread has finished
[2026-01-13 16:37:42] 2026-01-13 21:36:50,434 | INFO     | [data] copytool_out thread has finished
[2026-01-13 16:37:42] 2026-01-13 21:36:50,813 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 16:37:42] 2026-01-13 21:36:51,819 | INFO     | [job] queue monitor thread has finished
[2026-01-13 16:37:42] 2026-01-13 21:36:52,142 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 16:37:42] 2026-01-13 21:37:18,840 | INFO     | PID=827610 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-13 16:37:42] 2026-01-13 21:37:18,840 | INFO     | .. there are 6 such processes running
[2026-01-13 16:37:42] 2026-01-13 21:37:18,840 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 16:37:42] 2026-01-13 21:37:18,841 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 16:37:42] 2026-01-13 21:37:18,841 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 16:37:42] 2026-01-13 21:37:33,640 | INFO     | [monitor] cgroup control has ended
[2026-01-13 16:37:42] 2026-01-13 21:37:35,409 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140431216449344)>', '<ExcThread(monitor, started 140430842775296)>']
[2026-01-13 16:37:42] 2026-01-13 21:37:35,939 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 16:37:42] 2026-01-13 21:37:35,939 | INFO     | [monitor] control thread has ended
[2026-01-13 16:37:42] 2026-01-13 21:37:40,435 | INFO     | all workflow threads have been joined
[2026-01-13 16:37:42] 2026-01-13 21:37:40,435 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 16:37:42] 2026-01-13 21:37:40,435 | INFO     | traces error code: 0
[2026-01-13 16:37:42] 2026-01-13 21:37:40,435 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 16:37:42] 2026-01-13 21:37:40,771 [wrapper] ==== pilot stdout END ====
[2026-01-13 16:37:42] 2026-01-13 21:37:40,785 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 16:37:42] 2026-01-13 21:37:40,809 [wrapper] pilotpid: 827610
[2026-01-13 16:37:42] 2026-01-13 21:37:40,848 [wrapper] Pilot exit status: 0
[2026-01-13 16:37:42] 2026-01-13 21:37:41,016 [wrapper] pandaids: 6966863552
[2026-01-13 16:37:42] 2026-01-13 21:37:41,561 [wrapper] cleanup supervisor_pilot 3868232 827611
[2026-01-13 16:37:42] 2026-01-13 21:37:41,600 [wrapper] Test setup, not cleaning
[2026-01-13 16:37:42] 2026-01-13 21:37:41,633 [wrapper] apfmon messages muted
[2026-01-13 16:37:42] 2026-01-13 21:37:41,668 [wrapper] ==== wrapper stdout END ====
[2026-01-13 16:37:42] 2026-01-13 21:37:41,670 [wrapper] ==== wrapper stderr END ====
[2026-01-13 16:37:42]  *** Error codes and diagnostics ***
[2026-01-13 16:37:42]     "exeErrorCode": 0,
[2026-01-13 16:37:42]     "exeErrorDiag": "",
[2026-01-13 16:37:42]     "pilotErrorCode": 0,
[2026-01-13 16:37:42]     "pilotErrorDiag": "",
[2026-01-13 16:37:42]  *** Listing of results directory ***
[2026-01-13 16:37:42] total 1502780
[2026-01-13 16:37:42] -rw-r--r--. 1 boincer umatlas     579449 Jan 12 03:50 pilot3.tar.gz
[2026-01-13 16:37:42] -rw-r--r--. 1 boincer umatlas       5112 Jan 12 03:58 queuedata.json
[2026-01-13 16:37:42] -rwx------. 1 boincer umatlas      36322 Jan 12 03:58 runpilot2-wrapper.sh
[2026-01-13 16:37:42] -rw-r--r--. 1 boincer umatlas        100 Jan 12 06:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 16:37:42] -rwxr-xr-x. 1 boincer umatlas       7986 Jan 12 06:04 run_atlas
[2026-01-13 16:37:42] -rw-r--r--. 1 boincer umatlas        105 Jan 12 06:04 job.xml
[2026-01-13 16:37:42] -rw-r--r--. 2 boincer umatlas  320816904 Jan 12 06:04 EVNT.48118027._000309.pool.root.1
[2026-01-13 16:37:42] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 06:04 start_atlas.sh
[2026-01-13 16:37:42] drwxrwx--x. 2 boincer umatlas       4096 Jan 12 06:04 shared
[2026-01-13 16:37:42] -rw-r--r--. 2 boincer umatlas     592609 Jan 12 06:04 input.tar.gz
[2026-01-13 16:37:42] -rw-r--r--. 1 boincer umatlas          0 Jan 12 06:04 boinc_lockfile
[2026-01-13 16:37:42] -rw-r--r--. 1 boincer umatlas       2897 Jan 12 06:04 pandaJob.out
[2026-01-13 16:37:42] -rw-------. 1 boincer umatlas         57 Jan 12 06:04 setup.sh.local
[2026-01-13 16:37:42] -rw-------. 1 boincer umatlas     987696 Jan 12 06:04 agis_schedconf.cvmfs.json
[2026-01-13 16:37:42] drwx------. 5 boincer umatlas       4096 Jan 12 06:04 pilot3
[2026-01-13 16:37:42] -rw-r--r--. 1 boincer umatlas        533 Jan 13 16:22 boinc_task_state.xml
[2026-01-13 16:37:42] -rw-------. 1 boincer umatlas 1175912605 Jan 13 16:35 HITS.48187943._001504.pool.root.1
[2026-01-13 16:37:42] -rw-------. 1 boincer umatlas         95 Jan 13 16:36 pilot_heartbeat.json
[2026-01-13 16:37:42] -rw-------. 1 boincer umatlas       1054 Jan 13 16:36 memory_monitor_summary.json
[2026-01-13 16:37:42] -rw-r--r--. 1 boincer umatlas       6661 Jan 13 16:36 init_data.xml
[2026-01-13 16:37:42] -rw-------. 1 boincer umatlas    1516246 Jan 13 16:36 agis_ddmendpoints.agis.ALL.json
[2026-01-13 16:37:42] -rw-------. 1 boincer umatlas    3253095 Jan 13 16:36 log.48187943._001504.job.log.tgz.1
[2026-01-13 16:37:42] -rw-------. 1 boincer umatlas      27811 Jan 13 16:36 heartbeat.json
[2026-01-13 16:37:42] -rw-r--r--. 1 boincer umatlas       8192 Jan 13 16:37 boinc_mmap_file
[2026-01-13 16:37:42] -rw-r--r--. 1 boincer umatlas         29 Jan 13 16:37 wrapper_checkpoint.txt
[2026-01-13 16:37:42] -rw-------. 1 boincer umatlas       4822 Jan 13 16:37 pilotlog.txt
[2026-01-13 16:37:42] -rw-------. 1 boincer umatlas   15822895 Jan 13 16:37 log.48187943._001504.job.log.1
[2026-01-13 16:37:42] -rw-------. 1 boincer umatlas        353 Jan 13 16:37 output.list
[2026-01-13 16:37:42] -rw-r--r--. 1 boincer umatlas        620 Jan 13 16:37 runtime_log
[2026-01-13 16:37:42] -rw-------. 1 boincer umatlas   19118080 Jan 13 16:37 result.tar.gz
[2026-01-13 16:37:42] -rw-r--r--. 1 boincer umatlas       9339 Jan 13 16:37 runtime_log.err
[2026-01-13 16:37:42] -rw-------. 1 boincer umatlas        662 Jan 13 16:37 iFJODm5vSz8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdqhKDmA2o1Po.diag
[2026-01-13 16:37:42] -rw-r--r--. 1 boincer umatlas      20998 Jan 13 16:37 stderr.txt
[2026-01-13 16:37:42] HITS file was successfully produced:
[2026-01-13 16:37:42] -rw-------. 1 boincer umatlas 1175912605 Jan 13 16:35 shared/HITS.pool.root.1
[2026-01-13 16:37:42]  *** Contents of shared directory: ***
[2026-01-13 16:37:42] total 1480928
[2026-01-13 16:37:42] -rw-r--r--. 2 boincer umatlas  320816904 Jan 12 06:04 ATLAS.root_0
[2026-01-13 16:37:42] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 06:04 start_atlas.sh
[2026-01-13 16:37:42] -rw-r--r--. 2 boincer umatlas     592609 Jan 12 06:04 input.tar.gz
[2026-01-13 16:37:42] -rw-------. 1 boincer umatlas 1175912605 Jan 13 16:35 HITS.pool.root.1
[2026-01-13 16:37:42] -rw-------. 1 boincer umatlas   19118080 Jan 13 16:37 result.tar.gz
16:37:43 (823937): run_atlas exited; CPU time 358040.067160
16:37:43 (823937): called boinc_finish(0)

</stderr_txt>
]]>

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