Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:15:59 (2566350): wrapper (7.7.26015): starting
01:15:59 (2566350): wrapper: running run_atlas (--nthreads 12)
[2026-01-12 01:15:59] Arguments: --nthreads 12
[2026-01-12 01:15:59] Threads: 12
[2026-01-12 01:15:59] Checking for CVMFS
[2026-01-12 01:16:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 01:16:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 01:16:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 01:16:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 01:16:00] 2.11.5.0 1139287 60692 331732 155045 0 331 22852692 45568000 10741 130560 0 305265178 99.809 184795123 21097 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2026-01-12 01:16:00] CVMFS is ok
[2026-01-12 01:16:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 01:16:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 01:16:00] Further information can be found at the LHC@home message board.
[2026-01-12 01:16:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 01:16:00] Checking for apptainer binary...
[2026-01-12 01:16:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 01:16:00] Running /usr/bin/apptainer --version
[2026-01-12 01:16:00] apptainer version 1.4.1-1.el9
[2026-01-12 01:16:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 01:16:00] wns0042.triumf.lcg
[2026-01-12 01:16:00] apptainer works
[2026-01-12 01:16:00] Set ATHENA_PROC_NUMBER=12
[2026-01-12 01:16:00] Set ATHENA_CORE_NUMBER=12
[2026-01-12 01:16:00] Starting ATLAS job with PandaID=6966864594
[2026-01-12 01:16:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 01:21:18]  *** The last 200 lines of the pilot log: ***
[2026-01-12 01:21:18] 2026-01-12 09:20:33,892 | WARNING  | wrong length of table data, x=[1768209408.0, 1768209469.0], y=[1213.0, 327964.0] (must be same and length>=4)
[2026-01-12 01:21:18] 2026-01-12 09:20:33,893 | INFO     | could have reported an average CPU frequency of 1550 MHz (4 samples)
[2026-01-12 01:21:18] 2026-01-12 09:20:33,893 | INFO     | ..............................
[2026-01-12 01:21:18] 2026-01-12 09:20:33,893 | INFO     | . Timing measurements:
[2026-01-12 01:21:18] 2026-01-12 09:20:33,893 | INFO     | . get job = 0 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,893 | INFO     | . initial setup = 3 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | . payload setup = 11 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | . stage-in = 0 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | . payload execution = 103 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | . stage-out = 0 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | . log creation = 0 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | ..............................
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6966864594/pilotlog.txt
[2026-01-12 01:21:18] 2026-01-12 09:20:33,909 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-01-12 01:21:18] - Log from pilotlog.txt -
[2026-01-12 01:21:18] 2026-01-12 09:20:33,889 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6966864594/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 01:21:18] 2026-01-12 09:20:33,890 | INFO     | extracted standard info from prmon json
[2026-01-12 01:21:18] 2026-01-12 09:20:33,890 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 01:21:18] 2026-01-12 09:20:33,890 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 01:21:18] 2026-01-12 09:20:33,891 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-12 01:21:18] 2026-01-12 09:20:33,891 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-12 01:21:18] 2026-01-12 09:20:33,892 | WARNING  | wrong length of table data, x=[1768209408.0, 1768209469.0], y=[1213.0, 327964.0] (must be same and length>=4)
[2026-01-12 01:21:18] 2026-01-12 09:20:33,893 | INFO     | could have reported an average CPU frequency of 1550 MHz (4 samples)
[2026-01-12 01:21:18] 2026-01-12 09:20:33,893 | INFO     | ..............................
[2026-01-12 01:21:18] 2026-01-12 09:20:33,893 | INFO     | . Timing measurements:
[2026-01-12 01:21:18] 2026-01-12 09:20:33,893 | INFO     | . get job = 0 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,893 | INFO     | . initial setup = 3 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | . payload setup = 11 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | . stage-in = 0 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | . payload execution = 103 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | . stage-out = 0 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | . log creation = 0 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | ..............................
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6966864594/pilotlog.txt
[2026-01-12 01:21:18] 2026-01-12 09:20:33,910 | WARNING  | 
[2026-01-12 01:21:18] [begin log extracts]
[2026-01-12 01:21:18] - Log from pilotlog.txt -
[2026-01-12 01:21:18] 2026-01-12 09:20:33,889 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6966864594/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 01:21:18] 2026-01-12 09:20:33,890 | INFO     | extracted standard info from prmon json
[2026-01-12 01:21:18] 2026-01-12 09:20:33,890 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 01:21:18] 2026-01-12 09:20:33,890 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 01:21:18] 2026-01-12 09:20:33,891 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-12 01:21:18] 2026-01-12 09:20:33,891 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-12 01:21:18] 2026-01-12 09:20:33,892 | WARNING  | wrong length of table data, x=[1768209408.0, 1768209469.0], y=[1213.0, 327964.0] (must be same and length>=4)
[2026-01-12 01:21:18] 2026-01-12 09:20:33,893 | INFO     | could have reported an average CPU frequency of 1550 MHz (4 samples)
[2026-01-12 01:21:18] 2026-01-12 09:20:33,893 | INFO     | ..............................
[2026-01-12 01:21:18] 2026-01-12 09:20:33,893 | INFO     | . Timing measurements:
[2026-01-12 01:21:18] 2026-01-12 09:20:33,893 | INFO     | . get job = 0 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,893 | INFO     | . initial setup = 3 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | . payload setup = 11 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | . stage-in = 0 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | . payload execution = 103 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | . stage-out = 0 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | . log creation = 0 s
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | ..............................
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-12 01:21:18] 2026-01-12 09:20:33,894 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6966864594/pilotlog.txt
[2026-01-12 01:21:18] [end log extracts]
[2026-01-12 01:21:18] 2026-01-12 09:20:33,911 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2026-01-12 01:21:18] 2026-01-12 09:20:33,912 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-01-12 01:21:18] 2026-01-12 09:20:34,004 | INFO     | 
[2026-01-12 01:21:18] 2026-01-12 09:20:34,005 | INFO     | job summary report
[2026-01-12 01:21:18] 2026-01-12 09:20:34,005 | INFO     | --------------------------------------------------
[2026-01-12 01:21:18] 2026-01-12 09:20:34,005 | INFO     | PanDA job id: 6966864594
[2026-01-12 01:21:18] 2026-01-12 09:20:34,005 | INFO     | task id: 48187943
[2026-01-12 01:21:18] 2026-01-12 09:20:34,005 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-01-12 01:18:21,370 CRITICAL Transform executor raised TransformValidationExceptio
[2026-01-12 01:21:18] 2026-01-12 09:20:34,005 | INFO     | error 2/2: 1165: Local output file is missing
[2026-01-12 01:21:18] 2026-01-12 09:20:34,005 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 01:21:18] 2026-01-12 09:20:34,005 | INFO     | pilot state: failed 
[2026-01-12 01:21:18] 2026-01-12 09:20:34,005 | INFO     | transexitcode: 65
[2026-01-12 01:21:18] 2026-01-12 09:20:34,005 | INFO     | exeerrorcode: 65
[2026-01-12 01:21:18] 2026-01-12 09:20:34,005 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2026-01-12 01:21:18] 2026-01-12 09:20:34,006 | INFO     | exitcode: 65
[2026-01-12 01:21:18] 2026-01-12 09:20:34,006 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2026-01-12 01:21:18] 2026-01-12 09:20:34,006 | INFO     | cpuconsumptiontime: 99 s
[2026-01-12 01:21:18] 2026-01-12 09:20:34,006 | INFO     | nevents: 0
[2026-01-12 01:21:18] 2026-01-12 09:20:34,006 | INFO     | neventsw: 0
[2026-01-12 01:21:18] 2026-01-12 09:20:34,006 | INFO     | pid: 2577204
[2026-01-12 01:21:18] 2026-01-12 09:20:34,006 | INFO     | pgrp: 2577204
[2026-01-12 01:21:18] 2026-01-12 09:20:34,006 | INFO     | corecount: 12
[2026-01-12 01:21:18] 2026-01-12 09:20:34,006 | INFO     | event service: False
[2026-01-12 01:21:18] 2026-01-12 09:20:34,006 | INFO     | sizes: {0: 2284614, 5: 2284876, 11: 2284932, 118: 2308571, 119: 2308575, 120: 2312893, 121: 2313049, 244: 2313215}
[2026-01-12 01:21:18] 2026-01-12 09:20:34,006 | INFO     | --------------------------------------------------
[2026-01-12 01:21:18] 2026-01-12 09:20:34,006 | INFO     | 
[2026-01-12 01:21:18] 2026-01-12 09:20:34,007 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-01-12 01:21:18] 2026-01-12 09:20:34,027 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,027 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,027 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,027 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,028 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,028 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,028 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,028 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,028 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,028 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,028 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,028 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,029 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,029 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,029 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,029 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,029 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 01:21:18] 2026-01-12 09:20:34,029 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,029 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 01:21:18] 2026-01-12 09:20:34,030 | INFO     | job 6966864594 has completed (purged errors)
[2026-01-12 01:21:18] 2026-01-12 09:20:34,030 | INFO     | overall cleanup function is called
[2026-01-12 01:21:18] 2026-01-12 09:20:35,037 | INFO     | --- collectZombieJob: --- 10, [2577204]
[2026-01-12 01:21:18] 2026-01-12 09:20:35,037 | INFO     | zombie collector waiting for pid 2577204
[2026-01-12 01:21:18] 2026-01-12 09:20:35,037 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 01:21:18] 2026-01-12 09:20:35,037 | INFO     | collected zombie processes
[2026-01-12 01:21:18] 2026-01-12 09:20:35,038 | INFO     | will attempt to kill all subprocesses of pid=2577204
[2026-01-12 01:21:18] 2026-01-12 09:20:35,257 | INFO     | process IDs to be killed: [2577204] (in reverse order)
[2026-01-12 01:21:18] 2026-01-12 09:20:35,333 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 01:21:18] 2026-01-12 09:20:35,333 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 01:21:18] 2026-01-12 09:20:35,341 | INFO     | did not find any defunct processes belonging to 2577204
[2026-01-12 01:21:18] 2026-01-12 09:20:35,348 | INFO     | did not find any defunct processes belonging to 2577204
[2026-01-12 01:21:18] 2026-01-12 09:20:35,349 | INFO     | ready for new job
[2026-01-12 01:21:18] 2026-01-12 09:20:35,349 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 01:21:18] 2026-01-12 09:20:35,350 | INFO     | ***************************************
[2026-01-12 01:21:18] 2026-01-12 09:20:35,351 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 01:21:18] 2026-01-12 09:20:35,351 | INFO     | ***************************************
[2026-01-12 01:21:18] 2026-01-12 09:20:35,351 | INFO     | 
[2026-01-12 01:21:18] 2026-01-12 09:20:35,354 | INFO     | architecture information:
[2026-01-12 01:21:18] 2026-01-12 09:20:35,355 | INFO     | executing command: cat /etc/os-release
[2026-01-12 01:21:18] 2026-01-12 09:20:35,367 | INFO     | cat /etc/os-release:
[2026-01-12 01:21:18] NAME="CentOS Linux"
[2026-01-12 01:21:18] VERSION="7 (Core)"
[2026-01-12 01:21:18] ID="centos"
[2026-01-12 01:21:18] ID_LIKE="rhel fedora"
[2026-01-12 01:21:18] VERSION_ID="7"
[2026-01-12 01:21:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 01:21:18] ANSI_COLOR="0;31"
[2026-01-12 01:21:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 01:21:18] HOME_URL="https://www.centos.org/"
[2026-01-12 01:21:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 01:21:18] 
[2026-01-12 01:21:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 01:21:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 01:21:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 01:21:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 01:21:18] 
[2026-01-12 01:21:18] 2026-01-12 09:20:35,368 | INFO     | ***************************************
[2026-01-12 01:21:18] 2026-01-12 09:20:35,870 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-01-12 01:21:18] 2026-01-12 09:20:35,888 | INFO     | sufficient remaining disk space (2225129652224 B)
[2026-01-12 01:21:18] 2026-01-12 09:20:35,889 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 01:21:18] 2026-01-12 09:20:35,889 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 01:21:18] 2026-01-12 09:20:35,889 | INFO     | update_server=False
[2026-01-12 01:21:18] 2026-01-12 09:20:35,889 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 01:21:18] 2026-01-12 09:20:35,890 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 01:21:18] 2026-01-12 09:20:35,890 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 01:21:18] 2026-01-12 09:20:35,924 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-12 01:21:18] 2026-01-12 09:20:35,924 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-12 01:21:18] 2026-01-12 09:20:35,924 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 01:21:18] 2026-01-12 09:20:35,924 | INFO     | will abort loop
[2026-01-12 01:21:18] 2026-01-12 09:20:36,054 | INFO     | all data control threads have been joined
[2026-01-12 01:21:18] 2026-01-12 09:20:36,203 | INFO     | all job control threads have been joined
[2026-01-12 01:21:18] 2026-01-12 09:20:36,772 | INFO     | all payload control threads have been joined
[2026-01-12 01:21:18] 2026-01-12 09:20:36,895 | INFO     | [job] retrieve thread has finished
[2026-01-12 01:21:18] 2026-01-12 09:20:36,895 | INFO     | [job] queue monitor thread has finished
[2026-01-12 01:21:18] 2026-01-12 09:20:36,929 | INFO     | [job] job monitor thread has finished
[2026-01-12 01:21:18] 2026-01-12 09:20:36,962 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 01:21:18] 2026-01-12 09:20:37,059 | INFO     | [data] control thread has finished
[2026-01-12 01:21:18] 2026-01-12 09:20:37,208 | INFO     | [job] control thread has finished
[2026-01-12 01:21:18] 2026-01-12 09:20:37,272 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 01:21:18] 2026-01-12 09:20:37,519 | INFO     | [data] copytool_in thread has finished
[2026-01-12 01:21:18] 2026-01-12 09:20:37,695 | INFO     | [job] validate thread has finished
[2026-01-12 01:21:18] 2026-01-12 09:20:37,777 | INFO     | [payload] control thread has finished
[2026-01-12 01:21:18] 2026-01-12 09:20:37,896 | INFO     | [data] copytool_out thread has finished
[2026-01-12 01:21:18] 2026-01-12 09:20:37,911 | INFO     | [payload] failed_post thread has finished
[2026-01-12 01:21:18] 2026-01-12 09:20:37,934 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 01:21:18] 2026-01-12 09:20:38,110 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 01:21:18] 2026-01-12 09:20:38,246 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 01:21:18] 2026-01-12 09:20:38,482 | INFO     | [payload] validate_post thread has finished
[2026-01-12 01:21:18] 2026-01-12 09:20:42,252 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 01:21:18] 2026-01-12 09:21:05,450 | INFO     | PID=2569988 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-12 01:21:18] 2026-01-12 09:21:05,450 | INFO     | .. there are 14 such processes running
[2026-01-12 01:21:18] 2026-01-12 09:21:05,451 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 01:21:18] 2026-01-12 09:21:05,451 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 01:21:18] 2026-01-12 09:21:05,451 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 01:21:18] 2026-01-12 09:21:13,345 | INFO     | [monitor] cgroup control has ended
[2026-01-12 01:21:18] 2026-01-12 09:21:13,535 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140158417360704)>', '<ExcThread(monitor, started 140157667768064)>']
[2026-01-12 01:21:18] 2026-01-12 09:21:14,493 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 01:21:18] 2026-01-12 09:21:14,493 | INFO     | [monitor] control thread has ended
[2026-01-12 01:21:18] 2026-01-12 09:21:18,560 | INFO     | all workflow threads have been joined
[2026-01-12 01:21:18] 2026-01-12 09:21:18,560 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 01:21:18] 2026-01-12 09:21:18,561 | INFO     | traces error code: 0
[2026-01-12 01:21:18] 2026-01-12 09:21:18,561 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 01:21:18] 2026-01-12 09:21:18,680 [wrapper] ==== pilot stdout END ====
[2026-01-12 01:21:18] 2026-01-12 09:21:18,683 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 01:21:18] 2026-01-12 09:21:18,686 [wrapper] pilotpid: 2569988
[2026-01-12 01:21:18] 2026-01-12 09:21:18,689 [wrapper] Pilot exit status: 0
[2026-01-12 01:21:18] 2026-01-12 09:21:18,700 [wrapper] pandaids: 6966864594
[2026-01-12 01:21:18] 2026-01-12 09:21:18,756 [wrapper] cleanup supervisor_pilot 2569994 2569989
[2026-01-12 01:21:18] 2026-01-12 09:21:18,760 [wrapper] Test setup, not cleaning
[2026-01-12 01:21:18] 2026-01-12 09:21:18,762 [wrapper] apfmon messages muted
[2026-01-12 01:21:18] 2026-01-12 09:21:18,765 [wrapper] ==== wrapper stdout END ====
[2026-01-12 01:21:18] 2026-01-12 09:21:18,767 [wrapper] ==== wrapper stderr END ====
[2026-01-12 01:21:18]  *** Error codes and diagnostics ***
[2026-01-12 01:21:18]     "exeErrorCode": 65,
[2026-01-12 01:21:18]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2026-01-12 01:21:18]     "pilotErrorCode": 1305,
[2026-01-12 01:21:18]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2026-01-12 01:21:18]  *** Listing of results directory ***
[2026-01-12 01:21:18] total 317168
[2026-01-12 01:21:18] -rw-r--r--. 1 boinc boinc    579449 Jan 12 00:50 pilot3.tar.gz
[2026-01-12 01:21:18] -rw-r--r--. 1 boinc boinc      5112 Jan 12 00:58 queuedata.json
[2026-01-12 01:21:18] -rwx------. 1 boinc boinc     36322 Jan 12 00:59 runpilot2-wrapper.sh
[2026-01-12 01:21:18] -rw-r--r--. 1 boinc boinc       100 Jan 12 01:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 01:21:18] -rwxr-xr-x. 1 boinc boinc      7986 Jan 12 01:15 run_atlas
[2026-01-12 01:21:18] -rw-r--r--. 1 boinc boinc       105 Jan 12 01:15 job.xml
[2026-01-12 01:21:18] -rw-r--r--. 2 boinc boinc 320574711 Jan 12 01:15 EVNT.48118027._000329.pool.root.1
[2026-01-12 01:21:18] -rw-r--r--. 1 boinc boinc      6595 Jan 12 01:15 init_data.xml
[2026-01-12 01:21:18] -rw-r--r--. 2 boinc boinc     15847 Jan 12 01:15 start_atlas.sh
[2026-01-12 01:21:18] drwxrwx--x. 2 boinc boinc      4096 Jan 12 01:15 shared
[2026-01-12 01:21:18] -rw-r--r--. 2 boinc boinc    592613 Jan 12 01:15 input.tar.gz
[2026-01-12 01:21:18] -rw-r--r--. 1 boinc boinc         0 Jan 12 01:15 boinc_lockfile
[2026-01-12 01:21:18] -rw-r--r--. 1 boinc boinc      2894 Jan 12 01:16 pandaJob.out
[2026-01-12 01:21:18] -rw-------. 1 boinc boinc    987688 Jan 12 01:16 agis_schedconf.cvmfs.json
[2026-01-12 01:21:18] -rw-------. 1 boinc boinc   1516240 Jan 12 01:16 agis_ddmendpoints.agis.ALL.json
[2026-01-12 01:21:18] drwx------. 5 boinc boinc      4096 Jan 12 01:16 pilot3
[2026-01-12 01:21:18] -rw-r--r--. 1 boinc boinc       524 Jan 12 01:17 boinc_task_state.xml
[2026-01-12 01:21:18] -rw-------. 1 boinc boinc      1012 Jan 12 01:18 memory_monitor_summary.json
[2026-01-12 01:21:18] -rw-------. 1 boinc boinc     49534 Jan 12 01:18 log.48187943._001601.job.log.tgz.1
[2026-01-12 01:21:18] -rw-------. 1 boinc boinc        95 Jan 12 01:20 pilot_heartbeat.json
[2026-01-12 01:21:18] -rw-------. 1 boinc boinc      9891 Jan 12 01:20 heartbeat.json
[2026-01-12 01:21:18] -rw-r--r--. 1 boinc boinc      8192 Jan 12 01:21 boinc_mmap_file
[2026-01-12 01:21:18] -rw-r--r--. 1 boinc boinc        23 Jan 12 01:21 wrapper_checkpoint.txt
[2026-01-12 01:21:18] -rw-------. 1 boinc boinc      5009 Jan 12 01:21 pilotlog.txt
[2026-01-12 01:21:18] -rw-------. 1 boinc boinc     97563 Jan 12 01:21 log.48187943._001601.job.log.1
[2026-01-12 01:21:18] -rw-------. 1 boinc boinc       186 Jan 12 01:21 output.list
[2026-01-12 01:21:18] -rw-r--r--. 1 boinc boinc       620 Jan 12 01:21 runtime_log
[2026-01-12 01:21:18] -rw-------. 1 boinc boinc    163840 Jan 12 01:21 result.tar.gz
[2026-01-12 01:21:18] -rw-------. 1 boinc boinc       647 Jan 12 01:21 zWJLDm2wSz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDLnKDmmLQKNn.diag
[2026-01-12 01:21:18] -rw-r--r--. 1 boinc boinc      8636 Jan 12 01:21 runtime_log.err
[2026-01-12 01:21:18] -rw-r--r--. 1 boinc boinc     22395 Jan 12 01:21 stderr.txt
[2026-01-12 01:21:18] No HITS result produced
[2026-01-12 01:21:18]  *** Contents of shared directory: ***
[2026-01-12 01:21:18] total 313824
[2026-01-12 01:21:18] -rw-r--r--. 2 boinc boinc 320574711 Jan 12 01:15 ATLAS.root_0
[2026-01-12 01:21:18] -rw-r--r--. 2 boinc boinc     15847 Jan 12 01:15 start_atlas.sh
[2026-01-12 01:21:18] -rw-r--r--. 2 boinc boinc    592613 Jan 12 01:15 input.tar.gz
[2026-01-12 01:21:18] -rw-------. 1 boinc boinc    163840 Jan 12 01:21 result.tar.gz
01:21:20 (2566350): run_atlas exited; CPU time 92.029726
01:21:20 (2566350): called boinc_finish(0)

</stderr_txt>
]]>

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