Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:02:28 (4080339): wrapper (7.7.26015): starting
04:02:28 (4080339): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 04:02:28] Arguments: --nthreads 8
[2026-01-12 04:02:28] Threads: 8
[2026-01-12 04:02:28] Checking for CVMFS
[2026-01-12 04:02:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 04:02:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 04:02:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 04:02:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 04:02:30] 2.13.3.0 10223 97502 183060 155045 2 358 37923053 40960000 29440 16776704 0 1022601861 99.688 847530748 51050 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-12 04:02:30] CVMFS is ok
[2026-01-12 04:02:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 04:02:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 04:02:30] Further information can be found at the LHC@home message board.
[2026-01-12 04:02:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 04:02:30] Checking for apptainer binary...
[2026-01-12 04:02:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 04:02:30] Running /usr/bin/apptainer --version
[2026-01-12 04:02:30] apptainer version 1.4.5-2.el9
[2026-01-12 04:02:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 04:02:30] c8-7-6.aglt2.org
[2026-01-12 04:02:30] apptainer works
[2026-01-12 04:02:30] Set ATHENA_PROC_NUMBER=8
[2026-01-12 04:02:30] Set ATHENA_CORE_NUMBER=8
[2026-01-12 04:02:30] Starting ATLAS job with PandaID=6966861811
[2026-01-12 04:02:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 20:40:35]  *** The last 200 lines of the pilot log: ***
[2026-01-12 20:40:35] 2026-01-13 01:39:49,130 | INFO     | monitor loop #3794: job 0:6966861811 is in state 'finished'
[2026-01-12 20:40:35] 2026-01-13 01:39:49,130 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 20:40:35] 2026-01-13 01:39:50,616 | INFO     | time since job start (59767s) is within the limit (349056.0s)
[2026-01-12 20:40:35] 2026-01-13 01:39:51,641 | INFO     | monitor loop #3795: job 0:6966861811 is in state 'finished'
[2026-01-12 20:40:35] 2026-01-13 01:39:51,641 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 20:40:35] 2026-01-13 01:39:52,624 | INFO     | time since job start (59769s) is within the limit (349056.0s)
[2026-01-12 20:40:35] 2026-01-13 01:39:54,146 | INFO     | monitor loop #3796: job 0:6966861811 is in state 'finished'
[2026-01-12 20:40:35] 2026-01-13 01:39:54,146 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 20:40:35] 2026-01-13 01:39:54,631 | INFO     | time since job start (59771s) is within the limit (349056.0s)
[2026-01-12 20:40:35] 2026-01-13 01:39:56,638 | INFO     | time since job start (59773s) is within the limit (349056.0s)
[2026-01-12 20:40:35] 2026-01-13 01:39:56,680 | INFO     | monitor loop #3797: job 0:6966861811 is in state 'finished'
[2026-01-12 20:40:35] 2026-01-13 01:39:56,680 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 20:40:35] 2026-01-13 01:39:58,645 | INFO     | time since job start (59775s) is within the limit (349056.0s)
[2026-01-12 20:40:35] 2026-01-13 01:39:59,184 | INFO     | monitor loop #3798: job 0:6966861811 is in state 'finished'
[2026-01-12 20:40:35] 2026-01-13 01:39:59,184 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 20:40:35] 2026-01-13 01:39:59,215 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-12 20:40:35] 2026-01-13 01:39:59,245 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9938437500023
[2026-01-12 20:40:35] 2026-01-13 01:39:59,307 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6966861811/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 20:40:35] 2026-01-13 01:39:59,309 | INFO     | extracted standard info from prmon json
[2026-01-12 20:40:35] 2026-01-13 01:39:59,309 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 20:40:35] 2026-01-13 01:39:59,310 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 20:40:35] 2026-01-13 01:39:59,326 | INFO     | fitting pss+swap vs Time
[2026-01-12 20:40:35] 2026-01-13 01:39:59,327 | INFO     | sum of square deviations: 288279239065.4394
[2026-01-12 20:40:35] 2026-01-13 01:39:59,361 | INFO     | sum of deviations: 2103126431083.509
[2026-01-12 20:40:35] 2026-01-13 01:39:59,361 | INFO     | mean x: 1768238589.8012295
[2026-01-12 20:40:35] 2026-01-13 01:39:59,361 | INFO     | mean y: 3294669.7448770492
[2026-01-12 20:40:35] 2026-01-13 01:39:59,361 | INFO     | intersect: -12896799442.924202
[2026-01-12 20:40:35] 2026-01-13 01:39:59,362 | INFO     | chi2: 37.14450829210979
[2026-01-12 20:40:35] 2026-01-13 01:39:59,363 | INFO     | sum of square deviations: 283871618176.93134
[2026-01-12 20:40:35] 2026-01-13 01:39:59,385 | INFO     | sum of deviations: 2480050072353.2354
[2026-01-12 20:40:35] 2026-01-13 01:39:59,386 | INFO     | mean x: 1768238437.30793
[2026-01-12 20:40:35] 2026-01-13 01:39:59,386 | INFO     | mean y: 3307707.9958805353
[2026-01-12 20:40:35] 2026-01-13 01:39:59,386 | INFO     | intersect: -15444942781.244732
[2026-01-12 20:40:35] 2026-01-13 01:39:59,386 | INFO     | chi2: 33.684938716577456
[2026-01-12 20:40:35] 2026-01-13 01:39:59,387 | INFO     | current chi2=33.684938716577456 (change=9.313811743921278 %)
[2026-01-12 20:40:35] 2026-01-13 01:39:59,387 | INFO     | right removable region: 970
[2026-01-12 20:40:35] 2026-01-13 01:39:59,390 | INFO     | sum of square deviations: 283870843476.93134
[2026-01-12 20:40:35] 2026-01-13 01:39:59,410 | INFO     | sum of deviations: 1616584520242.2708
[2026-01-12 20:40:35] 2026-01-13 01:39:59,414 | INFO     | mean x: 1768238742.30793
[2026-01-12 20:40:35] 2026-01-13 01:39:59,414 | INFO     | mean y: 3311501.159629248
[2026-01-12 20:40:35] 2026-01-13 01:39:59,414 | INFO     | intersect: -10066434809.859299
[2026-01-12 20:40:35] 2026-01-13 01:39:59,415 | INFO     | chi2: 32.06450579662335
[2026-01-12 20:40:35] 2026-01-13 01:39:59,415 | INFO     | current chi2=32.06450579662335 (change=13.676321828079038 %)
[2026-01-12 20:40:35] 2026-01-13 01:39:59,415 | INFO     | left removable region: 10
[2026-01-12 20:40:35] 2026-01-13 01:39:59,416 | INFO     | sum of square deviations: 274331951377.8956
[2026-01-12 20:40:35] 2026-01-13 01:39:59,434 | INFO     | sum of deviations: 1613470136196.4758
[2026-01-12 20:40:35] 2026-01-13 01:39:59,434 | INFO     | mean x: 1768238711.8229167
[2026-01-12 20:40:35] 2026-01-13 01:39:59,435 | INFO     | mean y: 3343927.6145833335
[2026-01-12 20:40:35] 2026-01-13 01:39:59,435 | INFO     | intersect: -10396466742.863096
[2026-01-12 20:40:35] 2026-01-13 01:39:59,435 | INFO     | chi2: 23.27782565654952
[2026-01-12 20:40:35] 2026-01-13 01:39:59,435 | INFO     | current memory leak: 5.88 B/s (using 960 data points, chi2=23.28)
[2026-01-12 20:40:35] 2026-01-13 01:39:59,436 | INFO     | could have reported an average CPU frequency of 3798 MHz (36 samples)
[2026-01-12 20:40:35] 2026-01-13 01:39:59,436 | INFO     | ..............................
[2026-01-12 20:40:35] 2026-01-13 01:39:59,436 | INFO     | . Timing measurements:
[2026-01-12 20:40:35] 2026-01-13 01:39:59,437 | INFO     | . get job = 0 s
[2026-01-12 20:40:35] 2026-01-13 01:39:59,437 | INFO     | . initial setup = 6 s
[2026-01-12 20:40:35] 2026-01-13 01:39:59,437 | INFO     | . payload setup = 121 s
[2026-01-12 20:40:35] 2026-01-13 01:39:59,437 | INFO     | . stage-in = 0 s
[2026-01-12 20:40:35] 2026-01-13 01:39:59,437 | INFO     | . payload execution = 59528 s
[2026-01-12 20:40:35] 2026-01-13 01:39:59,437 | INFO     | . stage-out = 6 s
[2026-01-12 20:40:35] 2026-01-13 01:39:59,437 | INFO     | . log creation = 1 s
[2026-01-12 20:40:35] 2026-01-13 01:39:59,437 | INFO     | ..............................
[2026-01-12 20:40:35] 2026-01-13 01:39:59,746 | INFO     | 
[2026-01-12 20:40:35] 2026-01-13 01:39:59,746 | INFO     | job summary report
[2026-01-12 20:40:35] 2026-01-13 01:39:59,746 | INFO     | --------------------------------------------------
[2026-01-12 20:40:35] 2026-01-13 01:39:59,746 | INFO     | PanDA job id: 6966861811
[2026-01-12 20:40:35] 2026-01-13 01:39:59,746 | INFO     | task id: 48187943
[2026-01-12 20:40:35] 2026-01-13 01:39:59,746 | INFO     | errors: (none)
[2026-01-12 20:40:35] 2026-01-13 01:39:59,746 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 20:40:35] 2026-01-13 01:39:59,746 | INFO     | pilot state: finished 
[2026-01-12 20:40:35] 2026-01-13 01:39:59,746 | INFO     | transexitcode: 0
[2026-01-12 20:40:35] 2026-01-13 01:39:59,746 | INFO     | exeerrorcode: 0
[2026-01-12 20:40:35] 2026-01-13 01:39:59,746 | INFO     | exeerrordiag: 
[2026-01-12 20:40:35] 2026-01-13 01:39:59,746 | INFO     | exitcode: 0
[2026-01-12 20:40:35] 2026-01-13 01:39:59,746 | INFO     | exitmsg: OK
[2026-01-12 20:40:35] 2026-01-13 01:39:59,746 | INFO     | cpuconsumptiontime: 162836 s
[2026-01-12 20:40:35] 2026-01-13 01:39:59,746 | INFO     | nevents: 2050
[2026-01-12 20:40:35] 2026-01-13 01:39:59,746 | INFO     | neventsw: 0
[2026-01-12 20:40:35] 2026-01-13 01:39:59,746 | INFO     | pid: 4105631
[2026-01-12 20:40:35] 2026-01-13 01:39:59,747 | INFO     | pgrp: 4105631
[2026-01-12 20:40:35] 2026-01-13 01:39:59,747 | INFO     | corecount: 8
[2026-01-12 20:40:35] 2026-01-13 01:39:59,747 | INFO     | event service: False
[2026-01-12 20:40:35] 2026-01-13 01:39:59,747 | INFO     | sizes: {0: 2284452, 1: 2284651, 12: 2284651, 23: 2284679, 34: 2284707, 37: 2284997, 44: 2285153, 59654: 2356963, 59661: 2365961, 59663: 2366017, 59700: 2366263}
[2026-01-12 20:40:35] 2026-01-13 01:39:59,747 | INFO     | --------------------------------------------------
[2026-01-12 20:40:35] 2026-01-13 01:39:59,747 | INFO     | 
[2026-01-12 20:40:35] 2026-01-13 01:39:59,747 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-12 20:40:35] 2026-01-13 01:39:59,958 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,958 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | job 6966861811 has completed (purged errors)
[2026-01-12 20:40:35] 2026-01-13 01:39:59,959 | INFO     | overall cleanup function is called
[2026-01-12 20:40:35] 2026-01-13 01:40:01,021 | INFO     | --- collectZombieJob: --- 10, [4105631]
[2026-01-12 20:40:35] 2026-01-13 01:40:01,021 | INFO     | zombie collector waiting for pid 4105631
[2026-01-12 20:40:35] 2026-01-13 01:40:01,021 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 20:40:35] 2026-01-13 01:40:01,021 | INFO     | collected zombie processes
[2026-01-12 20:40:35] 2026-01-13 01:40:01,021 | INFO     | will attempt to kill all subprocesses of pid=4105631
[2026-01-12 20:40:35] 2026-01-13 01:40:02,602 | INFO     | process IDs to be killed: [4105631] (in reverse order)
[2026-01-12 20:40:35] 2026-01-13 01:40:03,072 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 20:40:35] 2026-01-13 01:40:03,072 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 20:40:35] 2026-01-13 01:40:03,201 | INFO     | did not find any defunct processes belonging to 4105631
[2026-01-12 20:40:35] 2026-01-13 01:40:03,345 | INFO     | did not find any defunct processes belonging to 4105631
[2026-01-12 20:40:35] 2026-01-13 01:40:03,346 | INFO     | ready for new job
[2026-01-12 20:40:35] 2026-01-13 01:40:03,346 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 20:40:35] 2026-01-13 01:40:03,362 | INFO     | ***************************************
[2026-01-12 20:40:35] 2026-01-13 01:40:03,362 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 20:40:35] 2026-01-13 01:40:03,362 | INFO     | ***************************************
[2026-01-12 20:40:35] 2026-01-13 01:40:03,363 | INFO     | 
[2026-01-12 20:40:35] 2026-01-13 01:40:03,388 | INFO     | architecture information:
[2026-01-12 20:40:35] 2026-01-13 01:40:03,418 | INFO     | executing command: cat /etc/os-release
[2026-01-12 20:40:35] 2026-01-13 01:40:03,559 | INFO     | cat /etc/os-release:
[2026-01-12 20:40:35] NAME="CentOS Linux"
[2026-01-12 20:40:35] VERSION="7 (Core)"
[2026-01-12 20:40:35] ID="centos"
[2026-01-12 20:40:35] ID_LIKE="rhel fedora"
[2026-01-12 20:40:35] VERSION_ID="7"
[2026-01-12 20:40:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 20:40:35] ANSI_COLOR="0;31"
[2026-01-12 20:40:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 20:40:35] HOME_URL="https://www.centos.org/"
[2026-01-12 20:40:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 20:40:35] 
[2026-01-12 20:40:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 20:40:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 20:40:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 20:40:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 20:40:35] 
[2026-01-12 20:40:35] 2026-01-13 01:40:03,559 | INFO     | ***************************************
[2026-01-12 20:40:35] 2026-01-13 01:40:04,063 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-12 20:40:35] 2026-01-13 01:40:04,125 | INFO     | sufficient remaining disk space (168458977280 B)
[2026-01-12 20:40:35] 2026-01-13 01:40:04,126 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 20:40:35] 2026-01-13 01:40:04,126 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 20:40:35] 2026-01-13 01:40:04,126 | INFO     | update_server=False
[2026-01-12 20:40:35] 2026-01-13 01:40:04,126 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 20:40:35] 2026-01-13 01:40:04,131 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 20:40:35] 2026-01-13 01:40:04,224 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-12 20:40:35] 2026-01-13 01:40:04,224 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-12 20:40:35] 2026-01-13 01:40:04,224 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 20:40:35] 2026-01-13 01:40:04,224 | INFO     | will abort loop
[2026-01-12 20:40:35] 2026-01-13 01:40:04,478 | INFO     | all job control threads have been joined
[2026-01-12 20:40:35] 2026-01-13 01:40:04,703 | INFO     | all payload control threads have been joined
[2026-01-12 20:40:35] 2026-01-13 01:40:04,806 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 20:40:35] 2026-01-13 01:40:04,895 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 20:40:35] 2026-01-13 01:40:05,007 | INFO     | all data control threads have been joined
[2026-01-12 20:40:35] 2026-01-13 01:40:05,137 | INFO     | [job] retrieve thread has finished
[2026-01-12 20:40:35] 2026-01-13 01:40:05,173 | INFO     | [payload] failed_post thread has finished
[2026-01-12 20:40:35] 2026-01-13 01:40:05,230 | INFO     | [job] job monitor thread has finished
[2026-01-12 20:40:35] 2026-01-13 01:40:05,415 | INFO     | [job] validate thread has finished
[2026-01-12 20:40:35] 2026-01-13 01:40:05,484 | INFO     | [job] control thread has finished
[2026-01-12 20:40:35] 2026-01-13 01:40:05,552 | INFO     | [payload] validate_post thread has finished
[2026-01-12 20:40:35] 2026-01-13 01:40:05,568 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 20:40:35] 2026-01-13 01:40:05,691 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 20:40:35] 2026-01-13 01:40:05,691 | INFO     | [data] copytool_in thread has finished
[2026-01-12 20:40:35] 2026-01-13 01:40:05,709 | INFO     | [payload] control thread has finished
[2026-01-12 20:40:35] 2026-01-13 01:40:05,812 | INFO     | [job] queue monitor thread has finished
[2026-01-12 20:40:35] 2026-01-13 01:40:06,013 | INFO     | [data] control thread has finished
[2026-01-12 20:40:35] 2026-01-13 01:40:06,117 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 20:40:35] 2026-01-13 01:40:06,138 | INFO     | [data] copytool_out thread has finished
[2026-01-12 20:40:35] 2026-01-13 01:40:06,605 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 20:40:35] 2026-01-13 01:40:08,904 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 20:40:35] 2026-01-13 01:40:26,385 | INFO     | [monitor] cgroup control has ended
[2026-01-12 20:40:35] 2026-01-13 01:40:27,564 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140701252486976)>', '<ExcThread(monitor, started 140700595230464)>']
[2026-01-12 20:40:35] 2026-01-13 01:40:32,637 | INFO     | all workflow threads have been joined
[2026-01-12 20:40:35] 2026-01-13 01:40:32,637 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 20:40:35] 2026-01-13 01:40:32,637 | INFO     | traces error code: 0
[2026-01-12 20:40:35] 2026-01-13 01:40:32,637 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 20:40:35] 2026-01-13 01:40:33,282 | INFO     | PID=4090833 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-12 20:40:35] 2026-01-13 01:40:33,282 | INFO     | .. there are 47 such processes running
[2026-01-12 20:40:35] 2026-01-13 01:40:33,283 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 20:40:35] 2026-01-13 01:40:33,283 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 20:40:35] 2026-01-13 01:40:33,283 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 20:40:35] 2026-01-13 01:40:33,283 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 20:40:35] 2026-01-13 01:40:33,283 | CRITICAL | thread 'MainThread' is not alive
[2026-01-12 20:40:35] 2026-01-13 01:40:33,283 | INFO     | [monitor] control thread has ended
[2026-01-12 20:40:35] 2026-01-13 01:40:33,629 [wrapper] ==== pilot stdout END ====
[2026-01-12 20:40:35] 2026-01-13 01:40:33,668 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 20:40:35] 2026-01-13 01:40:33,699 [wrapper] pilotpid: 4090833
[2026-01-12 20:40:35] 2026-01-13 01:40:33,729 [wrapper] Pilot exit status: 0
[2026-01-12 20:40:35] 2026-01-13 01:40:33,929 [wrapper] pandaids: 6966861811
[2026-01-12 20:40:35] 2026-01-13 01:40:34,371 [wrapper] cleanup supervisor_pilot 1998612 4090834
[2026-01-12 20:40:35] 2026-01-13 01:40:34,409 [wrapper] Test setup, not cleaning
[2026-01-12 20:40:35] 2026-01-13 01:40:34,461 [wrapper] apfmon messages muted
[2026-01-12 20:40:35] 2026-01-13 01:40:34,502 [wrapper] ==== wrapper stdout END ====
[2026-01-12 20:40:35] 2026-01-13 01:40:34,531 [wrapper] ==== wrapper stderr END ====
[2026-01-12 20:40:35]  *** Error codes and diagnostics ***
[2026-01-12 20:40:35]     "exeErrorCode": 0,
[2026-01-12 20:40:35]     "exeErrorDiag": "",
[2026-01-12 20:40:35]     "pilotErrorCode": 0,
[2026-01-12 20:40:35]     "pilotErrorDiag": "",
[2026-01-12 20:40:35]  *** Listing of results directory ***
[2026-01-12 20:40:35] total 1488076
[2026-01-12 20:40:35] -rw-r--r--. 1 boincer umatlas     579449 Jan 12 03:50 pilot3.tar.gz
[2026-01-12 20:40:35] -rw-r--r--. 1 boincer umatlas       5112 Jan 12 03:58 queuedata.json
[2026-01-12 20:40:35] -rwx------. 1 boincer umatlas      36322 Jan 12 03:58 runpilot2-wrapper.sh
[2026-01-12 20:40:35] -rw-r--r--. 1 boincer umatlas        100 Jan 12 04:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 20:40:35] -rwxr-xr-x. 1 boincer umatlas       7986 Jan 12 04:02 run_atlas
[2026-01-12 20:40:35] -rw-r--r--. 1 boincer umatlas        105 Jan 12 04:02 job.xml
[2026-01-12 20:40:35] -rw-r--r--. 2 boincer umatlas  321488115 Jan 12 04:02 EVNT.48118027._000255.pool.root.1
[2026-01-12 20:40:35] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 04:02 start_atlas.sh
[2026-01-12 20:40:35] drwxrwx--x. 2 boincer umatlas       4096 Jan 12 04:02 shared
[2026-01-12 20:40:35] -rw-r--r--. 2 boincer umatlas     592606 Jan 12 04:02 input.tar.gz
[2026-01-12 20:40:35] -rw-r--r--. 1 boincer umatlas          0 Jan 12 04:02 boinc_lockfile
[2026-01-12 20:40:35] -rw-r--r--. 1 boincer umatlas       2897 Jan 12 04:02 pandaJob.out
[2026-01-12 20:40:35] -rw-------. 1 boincer umatlas         57 Jan 12 04:02 setup.sh.local
[2026-01-12 20:40:35] -rw-------. 1 boincer umatlas     987688 Jan 12 04:03 agis_schedconf.cvmfs.json
[2026-01-12 20:40:35] drwx------. 5 boincer umatlas       4096 Jan 12 04:03 pilot3
[2026-01-12 20:40:35] -rw-r--r--. 1 boincer umatlas        533 Jan 12 20:11 boinc_task_state.xml
[2026-01-12 20:40:35] -rw-------. 1 boincer umatlas 1177783627 Jan 12 20:38 HITS.48187943._001242.pool.root.1
[2026-01-12 20:40:35] -rw-------. 1 boincer umatlas       1056 Jan 12 20:39 memory_monitor_summary.json
[2026-01-12 20:40:35] -rw-------. 1 boincer umatlas    1516240 Jan 12 20:39 agis_ddmendpoints.agis.ALL.json
[2026-01-12 20:40:35] -rw-------. 1 boincer umatlas    2477289 Jan 12 20:39 log.48187943._001242.job.log.tgz.1
[2026-01-12 20:40:35] -rw-r--r--. 1 boincer umatlas       7174 Jan 12 20:39 init_data.xml
[2026-01-12 20:40:35] -rw-------. 1 boincer umatlas      27468 Jan 12 20:39 heartbeat.json
[2026-01-12 20:40:35] -rw-r--r--. 1 boincer umatlas       8192 Jan 12 20:40 boinc_mmap_file
[2026-01-12 20:40:35] -rw-r--r--. 1 boincer umatlas         29 Jan 12 20:40 wrapper_checkpoint.txt
[2026-01-12 20:40:35] -rw-------. 1 boincer umatlas        893 Jan 12 20:40 pilotlog.txt
[2026-01-12 20:40:35] -rw-------. 1 boincer umatlas         95 Jan 12 20:40 pilot_heartbeat.json
[2026-01-12 20:40:35] -rw-------. 1 boincer umatlas    7807661 Jan 12 20:40 log.48187943._001242.job.log.1
[2026-01-12 20:40:35] -rw-------. 1 boincer umatlas        353 Jan 12 20:40 output.list
[2026-01-12 20:40:35] -rw-r--r--. 1 boincer umatlas        620 Jan 12 20:40 runtime_log
[2026-01-12 20:40:35] -rw-------. 1 boincer umatlas   10321920 Jan 12 20:40 result.tar.gz
[2026-01-12 20:40:35] -rw-------. 1 boincer umatlas        659 Jan 12 20:40 WBRLDm5vSz8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLphKDmZk0kSo.diag
[2026-01-12 20:40:35] -rw-r--r--. 1 boincer umatlas       9333 Jan 12 20:40 runtime_log.err
[2026-01-12 20:40:35] -rw-r--r--. 1 boincer umatlas      21674 Jan 12 20:40 stderr.txt
[2026-01-12 20:40:35] HITS file was successfully produced:
[2026-01-12 20:40:35] -rw-------. 1 boincer umatlas 1177783627 Jan 12 20:38 shared/HITS.pool.root.1
[2026-01-12 20:40:35]  *** Contents of shared directory: ***
[2026-01-12 20:40:35] total 1474816
[2026-01-12 20:40:35] -rw-r--r--. 2 boincer umatlas  321488115 Jan 12 04:02 ATLAS.root_0
[2026-01-12 20:40:35] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 04:02 start_atlas.sh
[2026-01-12 20:40:35] -rw-r--r--. 2 boincer umatlas     592606 Jan 12 04:02 input.tar.gz
[2026-01-12 20:40:35] -rw-------. 1 boincer umatlas 1177783627 Jan 12 20:38 HITS.pool.root.1
[2026-01-12 20:40:35] -rw-------. 1 boincer umatlas   10321920 Jan 12 20:40 result.tar.gz
20:40:58 (4080339): run_atlas exited; CPU time 163864.045542
20:40:58 (4080339): called boinc_finish(0)

</stderr_txt>
]]>

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