Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:58:43 (2107478): wrapper (7.7.26015): starting
04:58:43 (2107478): wrapper: running run_atlas (--nthreads 9)
[2026-01-12 04:58:43] Arguments: --nthreads 9
[2026-01-12 04:58:43] Threads: 9
[2026-01-12 04:58:43] Checking for CVMFS
[2026-01-12 04:58:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 04:58:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 04:58:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 04:58:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 04:58:44] 2.13.3.0 5699 3529 121248 155047 3 425 32242657 40960001 18794 16776704 0 4430565 99.718 1700224 23575 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 04:58:44] CVMFS is ok
[2026-01-12 04:58:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 04:58:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 04:58:44] Further information can be found at the LHC@home message board.
[2026-01-12 04:58:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 04:58:44] Checking for apptainer binary...
[2026-01-12 04:58:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 04:58:44] Running /usr/bin/apptainer --version
[2026-01-12 04:58:44] apptainer version 1.4.5-2.el9
[2026-01-12 04:58:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 04:58:44] c-212-12.aglt2.org
[2026-01-12 04:58:44] apptainer works
[2026-01-12 04:58:44] Set ATHENA_PROC_NUMBER=9
[2026-01-12 04:58:44] Set ATHENA_CORE_NUMBER=9
[2026-01-12 04:58:44] Starting ATLAS job with PandaID=6966861696
[2026-01-12 04:58:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 00:41:24]  *** The last 200 lines of the pilot log: ***
[2026-01-13 00:41:24] 2026-01-13 05:40:44,218 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-13 00:41:24] 2026-01-13 05:40:44,313 | INFO     | monitor loop #4631: job 0:6966861696 is in state 'finished'
[2026-01-13 00:41:24] 2026-01-13 05:40:44,313 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 00:41:24] 2026-01-13 05:40:45,372 | INFO     | time since job start (70902s) is within the limit (349056.0s)
[2026-01-13 00:41:24] 2026-01-13 05:40:46,818 | INFO     | monitor loop #4632: job 0:6966861696 is in state 'finished'
[2026-01-13 00:41:24] 2026-01-13 05:40:46,818 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 00:41:24] 2026-01-13 05:40:47,380 | INFO     | time since job start (70904s) is within the limit (349056.0s)
[2026-01-13 00:41:24] 2026-01-13 05:40:49,340 | INFO     | monitor loop #4633: job 0:6966861696 is in state 'finished'
[2026-01-13 00:41:24] 2026-01-13 05:40:49,340 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 00:41:24] 2026-01-13 05:40:49,387 | INFO     | time since job start (70906s) is within the limit (349056.0s)
[2026-01-13 00:41:24] 2026-01-13 05:40:50,082 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-13 00:41:24] 2026-01-13 05:40:50,087 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3155.9266874999994
[2026-01-13 00:41:24] 2026-01-13 05:40:50,102 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6966861696/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 00:41:24] 2026-01-13 05:40:50,103 | INFO     | extracted standard info from prmon json
[2026-01-13 00:41:24] 2026-01-13 05:40:50,103 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 00:41:24] 2026-01-13 05:40:50,103 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 00:41:24] 2026-01-13 05:40:50,211 | INFO     | fitting pss+swap vs Time
[2026-01-13 00:41:24] 2026-01-13 05:40:50,228 | INFO     | sum of square deviations: 486533056539.1288
[2026-01-13 00:41:24] 2026-01-13 05:40:50,349 | INFO     | sum of deviations: 4265992093068.018
[2026-01-13 00:41:24] 2026-01-13 05:40:50,350 | INFO     | mean x: 1768247402.5679862
[2026-01-13 00:41:24] 2026-01-13 05:40:50,350 | INFO     | mean y: 5879548.575731497
[2026-01-13 00:41:24] 2026-01-13 05:40:50,350 | INFO     | intersect: -15498369004.649609
[2026-01-13 00:41:24] 2026-01-13 05:40:50,367 | INFO     | chi2: 17.607753378838648
[2026-01-13 00:41:24] 2026-01-13 05:40:50,368 | INFO     | sum of square deviations: 480280807964.3633
[2026-01-13 00:41:24] 2026-01-13 05:40:50,519 | INFO     | sum of deviations: 5193254416918.863
[2026-01-13 00:41:24] 2026-01-13 05:40:50,536 | INFO     | mean x: 1768247250.0812447
[2026-01-13 00:41:24] 2026-01-13 05:40:50,536 | INFO     | mean y: 5902162.841832325
[2026-01-13 00:41:24] 2026-01-13 05:40:50,536 | INFO     | intersect: -19114074503.747
[2026-01-13 00:41:24] 2026-01-13 05:40:50,537 | INFO     | chi2: 13.56855700831324
[2026-01-13 00:41:24] 2026-01-13 05:40:50,537 | INFO     | current chi2=13.56855700831324 (change=22.93987360920102 %)
[2026-01-13 00:41:24] 2026-01-13 05:40:50,537 | INFO     | right removable region: 1156
[2026-01-13 00:41:24] 2026-01-13 05:40:50,538 | INFO     | sum of square deviations: 480278633314.363
[2026-01-13 00:41:24] 2026-01-13 05:40:50,714 | INFO     | sum of deviations: 3296546621982.9688
[2026-01-13 00:41:24] 2026-01-13 05:40:50,714 | INFO     | mean x: 1768247555.0812447
[2026-01-13 00:41:24] 2026-01-13 05:40:50,714 | INFO     | mean y: 5903187.330164217
[2026-01-13 00:41:24] 2026-01-13 05:40:50,714 | INFO     | intersect: -12131031708.787354
[2026-01-13 00:41:24] 2026-01-13 05:40:50,719 | INFO     | chi2: 13.16856516499126
[2026-01-13 00:41:24] 2026-01-13 05:40:50,719 | INFO     | current chi2=13.16856516499126 (change=25.211553787336054 %)
[2026-01-13 00:41:24] 2026-01-13 05:40:50,720 | INFO     | sum of square deviations: 474078095389.875
[2026-01-13 00:41:24] 2026-01-13 05:40:50,873 | INFO     | sum of deviations: 2542524925811.663
[2026-01-13 00:41:24] 2026-01-13 05:40:50,874 | INFO     | mean x: 1768247707.59375
[2026-01-13 00:41:24] 2026-01-13 05:40:50,874 | INFO     | mean y: 5921726.230034722
[2026-01-13 00:41:24] 2026-01-13 05:40:50,874 | INFO     | intersect: -9477355217.559471
[2026-01-13 00:41:24] 2026-01-13 05:40:50,875 | INFO     | chi2: 10.51191967313236
[2026-01-13 00:41:24] 2026-01-13 05:40:50,875 | INFO     | current chi2=10.51191967313236 (change=20.174145463634986 %)
[2026-01-13 00:41:24] 2026-01-13 05:40:50,875 | INFO     | left removable region: 20
[2026-01-13 00:41:24] 2026-01-13 05:40:50,896 | INFO     | sum of square deviations: 454598664692.25
[2026-01-13 00:41:24] 2026-01-13 05:40:51,055 | INFO     | sum of deviations: 2546584775922.5005
[2026-01-13 00:41:24] 2026-01-13 05:40:51,055 | INFO     | mean x: 1768247829.625
[2026-01-13 00:41:24] 2026-01-13 05:40:51,055 | INFO     | mean y: 5974078.883802817
[2026-01-13 00:41:24] 2026-01-13 05:40:51,056 | INFO     | intersect: -9899450975.607773
[2026-01-13 00:41:24] 2026-01-13 05:40:51,074 | INFO     | chi2: 3.6493159999478015
[2026-01-13 00:41:24] 2026-01-13 05:40:51,074 | INFO     | current memory leak: 5.60 B/s (using 1136 data points, chi2=3.65)
[2026-01-13 00:41:24] 2026-01-13 05:40:51,075 | INFO     | could have reported an average CPU frequency of 3193 MHz (42 samples)
[2026-01-13 00:41:24] 2026-01-13 05:40:51,075 | INFO     | ..............................
[2026-01-13 00:41:24] 2026-01-13 05:40:51,075 | INFO     | . Timing measurements:
[2026-01-13 00:41:24] 2026-01-13 05:40:51,075 | INFO     | . get job = 0 s
[2026-01-13 00:41:24] 2026-01-13 05:40:51,075 | INFO     | . initial setup = 2 s
[2026-01-13 00:41:24] 2026-01-13 05:40:51,075 | INFO     | . payload setup = 16 s
[2026-01-13 00:41:24] 2026-01-13 05:40:51,075 | INFO     | . stage-in = 0 s
[2026-01-13 00:41:24] 2026-01-13 05:40:51,076 | INFO     | . payload execution = 70847 s
[2026-01-13 00:41:24] 2026-01-13 05:40:51,076 | INFO     | . stage-out = 5 s
[2026-01-13 00:41:24] 2026-01-13 05:40:51,076 | INFO     | . log creation = 1 s
[2026-01-13 00:41:24] 2026-01-13 05:40:51,076 | INFO     | ..............................
[2026-01-13 00:41:24] 2026-01-13 05:40:51,363 | INFO     | 
[2026-01-13 00:41:24] 2026-01-13 05:40:51,373 | INFO     | job summary report
[2026-01-13 00:41:24] 2026-01-13 05:40:51,373 | INFO     | --------------------------------------------------
[2026-01-13 00:41:24] 2026-01-13 05:40:51,373 | INFO     | PanDA job id: 6966861696
[2026-01-13 00:41:24] 2026-01-13 05:40:51,382 | INFO     | task id: 48187943
[2026-01-13 00:41:24] 2026-01-13 05:40:51,382 | INFO     | errors: (none)
[2026-01-13 00:41:24] 2026-01-13 05:40:51,382 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 00:41:24] 2026-01-13 05:40:51,382 | INFO     | pilot state: finished 
[2026-01-13 00:41:24] 2026-01-13 05:40:51,382 | INFO     | transexitcode: 0
[2026-01-13 00:41:24] 2026-01-13 05:40:51,382 | INFO     | exeerrorcode: 0
[2026-01-13 00:41:24] 2026-01-13 05:40:51,382 | INFO     | exeerrordiag: 
[2026-01-13 00:41:24] 2026-01-13 05:40:51,382 | INFO     | exitcode: 0
[2026-01-13 00:41:24] 2026-01-13 05:40:51,382 | INFO     | exitmsg: OK
[2026-01-13 00:41:24] 2026-01-13 05:40:51,382 | INFO     | cpuconsumptiontime: 233717 s
[2026-01-13 00:41:24] 2026-01-13 05:40:51,382 | INFO     | nevents: 2050
[2026-01-13 00:41:24] 2026-01-13 05:40:51,382 | INFO     | neventsw: 0
[2026-01-13 00:41:24] 2026-01-13 05:40:51,382 | INFO     | pid: 2119941
[2026-01-13 00:41:24] 2026-01-13 05:40:51,382 | INFO     | pgrp: 2119941
[2026-01-13 00:41:24] 2026-01-13 05:40:51,382 | INFO     | corecount: 9
[2026-01-13 00:41:24] 2026-01-13 05:40:51,383 | INFO     | event service: False
[2026-01-13 00:41:24] 2026-01-13 05:40:51,383 | INFO     | sizes: {0: 2283795, 1: 2284651, 8: 2284913, 12: 2284941, 70868: 2361936, 70875: 2370966, 70877: 2371150, 70887: 2371396}
[2026-01-13 00:41:24] 2026-01-13 05:40:51,383 | INFO     | --------------------------------------------------
[2026-01-13 00:41:24] 2026-01-13 05:40:51,383 | INFO     | 
[2026-01-13 00:41:24] 2026-01-13 05:40:51,383 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-13 00:41:24] 2026-01-13 05:40:51,452 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,452 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,452 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,452 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,453 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,453 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,453 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,453 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,453 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,453 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,453 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,453 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,453 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,453 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,453 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,453 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,453 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,453 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 00:41:24] 2026-01-13 05:40:51,454 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,454 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 00:41:24] 2026-01-13 05:40:51,454 | INFO     | job 6966861696 has completed (purged errors)
[2026-01-13 00:41:24] 2026-01-13 05:40:51,454 | INFO     | overall cleanup function is called
[2026-01-13 00:41:24] 2026-01-13 05:40:52,501 | INFO     | --- collectZombieJob: --- 10, [2119941]
[2026-01-13 00:41:24] 2026-01-13 05:40:52,502 | INFO     | zombie collector waiting for pid 2119941
[2026-01-13 00:41:24] 2026-01-13 05:40:52,502 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 00:41:24] 2026-01-13 05:40:52,502 | INFO     | collected zombie processes
[2026-01-13 00:41:24] 2026-01-13 05:40:52,502 | INFO     | will attempt to kill all subprocesses of pid=2119941
[2026-01-13 00:41:24] 2026-01-13 05:40:53,590 | INFO     | process IDs to be killed: [2119941] (in reverse order)
[2026-01-13 00:41:24] 2026-01-13 05:40:53,744 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 00:41:24] 2026-01-13 05:40:53,744 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 00:41:24] 2026-01-13 05:40:53,826 | INFO     | did not find any defunct processes belonging to 2119941
[2026-01-13 00:41:24] 2026-01-13 05:40:53,856 | INFO     | did not find any defunct processes belonging to 2119941
[2026-01-13 00:41:24] 2026-01-13 05:40:53,856 | INFO     | ready for new job
[2026-01-13 00:41:24] 2026-01-13 05:40:53,856 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 00:41:24] 2026-01-13 05:40:53,867 | INFO     | ***************************************
[2026-01-13 00:41:24] 2026-01-13 05:40:53,867 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 00:41:24] 2026-01-13 05:40:53,867 | INFO     | ***************************************
[2026-01-13 00:41:24] 2026-01-13 05:40:53,867 | INFO     | 
[2026-01-13 00:41:24] 2026-01-13 05:40:53,875 | INFO     | architecture information:
[2026-01-13 00:41:24] 2026-01-13 05:40:53,876 | INFO     | executing command: cat /etc/os-release
[2026-01-13 00:41:24] 2026-01-13 05:40:53,898 | INFO     | cat /etc/os-release:
[2026-01-13 00:41:24] NAME="CentOS Linux"
[2026-01-13 00:41:24] VERSION="7 (Core)"
[2026-01-13 00:41:24] ID="centos"
[2026-01-13 00:41:24] ID_LIKE="rhel fedora"
[2026-01-13 00:41:24] VERSION_ID="7"
[2026-01-13 00:41:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 00:41:24] ANSI_COLOR="0;31"
[2026-01-13 00:41:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 00:41:24] HOME_URL="https://www.centos.org/"
[2026-01-13 00:41:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 00:41:24] 
[2026-01-13 00:41:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 00:41:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 00:41:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 00:41:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 00:41:24] 
[2026-01-13 00:41:24] 2026-01-13 05:40:53,899 | INFO     | ***************************************
[2026-01-13 00:41:24] 2026-01-13 05:40:54,404 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-13 00:41:24] 2026-01-13 05:40:54,438 | INFO     | sufficient remaining disk space (124146155520 B)
[2026-01-13 00:41:24] 2026-01-13 05:40:54,439 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 00:41:24] 2026-01-13 05:40:54,439 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 00:41:24] 2026-01-13 05:40:54,439 | INFO     | update_server=False
[2026-01-13 00:41:24] 2026-01-13 05:40:54,439 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 00:41:24] 2026-01-13 05:40:54,609 | INFO     | all data control threads have been joined
[2026-01-13 00:41:24] 2026-01-13 05:40:54,639 | INFO     | all payload control threads have been joined
[2026-01-13 00:41:24] 2026-01-13 05:40:55,394 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 00:41:24] 2026-01-13 05:40:55,394 | INFO     | aborting loop
[2026-01-13 00:41:24] 2026-01-13 05:40:55,444 | INFO     | [job] retrieve thread has finished
[2026-01-13 00:41:24] 2026-01-13 05:40:55,629 | INFO     | [data] control thread has finished
[2026-01-13 00:41:24] 2026-01-13 05:40:55,646 | INFO     | [payload] control thread has finished
[2026-01-13 00:41:24] 2026-01-13 05:40:55,692 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 00:41:24] 2026-01-13 05:40:55,747 | INFO     | all job control threads have been joined
[2026-01-13 00:41:24] 2026-01-13 05:40:55,781 | INFO     | [payload] failed_post thread has finished
[2026-01-13 00:41:24] 2026-01-13 05:40:55,842 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 00:41:24] 2026-01-13 05:40:55,846 | INFO     | [job] validate thread has finished
[2026-01-13 00:41:24] 2026-01-13 05:40:55,929 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 00:41:24] 2026-01-13 05:40:56,110 | INFO     | [data] copytool_in thread has finished
[2026-01-13 00:41:24] 2026-01-13 05:40:56,341 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 00:41:24] 2026-01-13 05:40:56,400 | INFO     | [job] job monitor thread has finished
[2026-01-13 00:41:24] 2026-01-13 05:40:56,450 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 00:41:24] 2026-01-13 05:40:56,538 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 00:41:24] 2026-01-13 05:40:56,617 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 00:41:24] 2026-01-13 05:40:56,754 | INFO     | [job] control thread has finished
[2026-01-13 00:41:24] 2026-01-13 05:40:56,776 | INFO     | [payload] validate_post thread has finished
[2026-01-13 00:41:24] 2026-01-13 05:40:57,458 | INFO     | [job] queue monitor thread has finished
[2026-01-13 00:41:24] 2026-01-13 05:40:57,699 | INFO     | [data] copytool_out thread has finished
[2026-01-13 00:41:24] 2026-01-13 05:41:00,559 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 00:41:24] 2026-01-13 05:41:05,288 | INFO     | [monitor] cgroup control has ended
[2026-01-13 00:41:24] 2026-01-13 05:41:05,483 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140510667450176)>', '<ExcThread(monitor, started 140510299670272)>']
[2026-01-13 00:41:24] 2026-01-13 05:41:10,509 | INFO     | all workflow threads have been joined
[2026-01-13 00:41:24] 2026-01-13 05:41:10,509 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 00:41:24] 2026-01-13 05:41:10,513 | INFO     | traces error code: 0
[2026-01-13 00:41:24] 2026-01-13 05:41:10,517 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 00:41:24] 2026-01-13 05:41:23,401 | INFO     | PID=2111175 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 00:41:24] 2026-01-13 05:41:23,401 | INFO     | .. there are 16 such processes running
[2026-01-13 00:41:24] 2026-01-13 05:41:23,401 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 00:41:24] 2026-01-13 05:41:23,401 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 00:41:24] 2026-01-13 05:41:23,401 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 00:41:24] 2026-01-13 05:41:23,401 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 00:41:24] 2026-01-13 05:41:23,402 | CRITICAL | thread 'MainThread' is not alive
[2026-01-13 00:41:24] 2026-01-13 05:41:23,402 | INFO     | [monitor] control thread has ended
[2026-01-13 00:41:24] 2026-01-13 05:41:24,256 [wrapper] ==== pilot stdout END ====
[2026-01-13 00:41:24] 2026-01-13 05:41:24,263 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 00:41:24] 2026-01-13 05:41:24,274 [wrapper] pilotpid: 2111175
[2026-01-13 00:41:24] 2026-01-13 05:41:24,278 [wrapper] Pilot exit status: 0
[2026-01-13 00:41:24] 2026-01-13 05:41:24,306 [wrapper] pandaids: 6966861696
[2026-01-13 00:41:24] 2026-01-13 05:41:24,402 [wrapper] cleanup supervisor_pilot  360182 2111176
[2026-01-13 00:41:24] 2026-01-13 05:41:24,410 [wrapper] Test setup, not cleaning
[2026-01-13 00:41:24] 2026-01-13 05:41:24,415 [wrapper] apfmon messages muted
[2026-01-13 00:41:24] 2026-01-13 05:41:24,417 [wrapper] ==== wrapper stdout END ====
[2026-01-13 00:41:24] 2026-01-13 05:41:24,433 [wrapper] ==== wrapper stderr END ====
[2026-01-13 00:41:24]  *** Error codes and diagnostics ***
[2026-01-13 00:41:24]     "exeErrorCode": 0,
[2026-01-13 00:41:24]     "exeErrorDiag": "",
[2026-01-13 00:41:24]     "pilotErrorCode": 0,
[2026-01-13 00:41:24]     "pilotErrorDiag": "",
[2026-01-13 00:41:24]  *** Listing of results directory ***
[2026-01-13 00:41:24] total 1482112
[2026-01-13 00:41:24] -rw-r--r--. 1 boincer umatlas     579449 Jan 12 03:50 pilot3.tar.gz
[2026-01-13 00:41:24] -rw-r--r--. 1 boincer umatlas       5112 Jan 12 03:58 queuedata.json
[2026-01-13 00:41:24] -rwx------. 1 boincer umatlas      36322 Jan 12 03:58 runpilot2-wrapper.sh
[2026-01-13 00:41:24] -rw-r--r--. 1 boincer umatlas        100 Jan 12 04:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 00:41:24] -rwxr-xr-x. 1 boincer umatlas       7986 Jan 12 04:58 run_atlas
[2026-01-13 00:41:24] -rw-r--r--. 1 boincer umatlas        105 Jan 12 04:58 job.xml
[2026-01-13 00:41:24] -rw-r--r--. 2 boincer umatlas  319610745 Jan 12 04:58 EVNT.48118027._000236.pool.root.1
[2026-01-13 00:41:24] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 04:58 start_atlas.sh
[2026-01-13 00:41:24] drwxrwx--x. 2 boincer umatlas       4096 Jan 12 04:58 shared
[2026-01-13 00:41:24] -rw-r--r--. 2 boincer umatlas     592609 Jan 12 04:58 input.tar.gz
[2026-01-13 00:41:24] -rw-r--r--. 1 boincer umatlas          0 Jan 12 04:58 boinc_lockfile
[2026-01-13 00:41:24] -rw-r--r--. 1 boincer umatlas       2897 Jan 12 04:58 pandaJob.out
[2026-01-13 00:41:24] -rw-------. 1 boincer umatlas         57 Jan 12 04:58 setup.sh.local
[2026-01-13 00:41:24] -rw-------. 1 boincer umatlas     987688 Jan 12 04:59 agis_schedconf.cvmfs.json
[2026-01-13 00:41:24] drwx------. 5 boincer umatlas       4096 Jan 12 04:59 pilot3
[2026-01-13 00:41:24] -rw-r--r--. 1 boincer umatlas        533 Jan 13 00:23 boinc_task_state.xml
[2026-01-13 00:41:24] -rw-r--r--. 1 boincer umatlas       6958 Jan 13 00:36 init_data.xml
[2026-01-13 00:41:24] -rw-------. 1 boincer umatlas 1169594654 Jan 13 00:40 HITS.48187943._001150.pool.root.1
[2026-01-13 00:41:24] -rw-------. 1 boincer umatlas       1071 Jan 13 00:40 memory_monitor_summary.json
[2026-01-13 00:41:24] -rw-------. 1 boincer umatlas         95 Jan 13 00:40 pilot_heartbeat.json
[2026-01-13 00:41:24] -rw-------. 1 boincer umatlas    1516240 Jan 13 00:40 agis_ddmendpoints.agis.ALL.json
[2026-01-13 00:41:24] -rw-------. 1 boincer umatlas    2810997 Jan 13 00:40 log.48187943._001150.job.log.tgz.1
[2026-01-13 00:41:24] -rw-------. 1 boincer umatlas      26948 Jan 13 00:40 heartbeat.json
[2026-01-13 00:41:24] -rw-r--r--. 1 boincer umatlas       8192 Jan 13 00:41 boinc_mmap_file
[2026-01-13 00:41:24] -rw-------. 1 boincer umatlas        893 Jan 13 00:41 pilotlog.txt
[2026-01-13 00:41:24] -rw-r--r--. 1 boincer umatlas         29 Jan 13 00:41 wrapper_checkpoint.txt
[2026-01-13 00:41:24] -rw-------. 1 boincer umatlas    9454039 Jan 13 00:41 log.48187943._001150.job.log.1
[2026-01-13 00:41:24] -rw-------. 1 boincer umatlas        353 Jan 13 00:41 output.list
[2026-01-13 00:41:24] -rw-r--r--. 1 boincer umatlas        620 Jan 13 00:41 runtime_log
[2026-01-13 00:41:24] -rw-------. 1 boincer umatlas   12298240 Jan 13 00:41 result.tar.gz
[2026-01-13 00:41:24] -rw-------. 1 boincer umatlas        666 Jan 13 00:41 v3NLDm5vSz8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIphKDmhLPmqn.diag
[2026-01-13 00:41:24] -rw-r--r--. 1 boincer umatlas       9343 Jan 13 00:41 runtime_log.err
[2026-01-13 00:41:24] -rw-r--r--. 1 boincer umatlas      21510 Jan 13 00:41 stderr.txt
[2026-01-13 00:41:24] HITS file was successfully produced:
[2026-01-13 00:41:24] -rw-------. 1 boincer umatlas 1169594654 Jan 13 00:40 shared/HITS.pool.root.1
[2026-01-13 00:41:24]  *** Contents of shared directory: ***
[2026-01-13 00:41:24] total 1466916
[2026-01-13 00:41:24] -rw-r--r--. 2 boincer umatlas  319610745 Jan 12 04:58 ATLAS.root_0
[2026-01-13 00:41:24] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 04:58 start_atlas.sh
[2026-01-13 00:41:24] -rw-r--r--. 2 boincer umatlas     592609 Jan 12 04:58 input.tar.gz
[2026-01-13 00:41:24] -rw-------. 1 boincer umatlas 1169594654 Jan 13 00:40 HITS.pool.root.1
[2026-01-13 00:41:24] -rw-------. 1 boincer umatlas   12298240 Jan 13 00:41 result.tar.gz
00:41:26 (2107478): run_atlas exited; CPU time 233816.761461
00:41:26 (2107478): called boinc_finish(0)

</stderr_txt>
]]>

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