Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:55:54 (2547): wrapper (7.7.26015): starting
03:55:54 (2547): wrapper: running run_atlas (--nthreads 12)
[2026-01-12 03:55:54] Arguments: --nthreads 12
[2026-01-12 03:55:54] Threads: 12
[2026-01-12 03:55:54] Checking for CVMFS
[2026-01-12 03:55:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 03:55:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 03:55:54] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 03:55:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 03:55:54] 2.11.2.0 3081 355102 96356 155045 3 1 11045671 20275201 1 130560 1 149395697 99.952 20595721 16311 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 03:55:54] CVMFS is ok
[2026-01-12 03:55:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 03:55:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 03:55:54] Further information can be found at the LHC@home message board.
[2026-01-12 03:55:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 03:55:54] Checking for apptainer binary...
[2026-01-12 03:55:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 03:55:54] Running /usr/bin/apptainer --version
[2026-01-12 03:55:54] apptainer version 1.3.2-1.el7
[2026-01-12 03:55:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 03:55:55] c-205-29.aglt2.org
[2026-01-12 03:55:55] apptainer works
[2026-01-12 03:55:55] Set ATHENA_PROC_NUMBER=12
[2026-01-12 03:55:55] Set ATHENA_CORE_NUMBER=12
[2026-01-12 03:55:55] Starting ATLAS job with PandaID=6966860551
[2026-01-12 03:55:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 12:48:09]  *** The last 200 lines of the pilot log: ***
[2026-01-12 12:48:09] 2026-01-12 17:47:13,500 | INFO     | time since job start (31863s) is within the limit (349056.0s)
[2026-01-12 12:48:09] 2026-01-12 17:47:15,505 | INFO     | time since job start (31865s) is within the limit (349056.0s)
[2026-01-12 12:48:09] 2026-01-12 17:47:15,919 | INFO     | monitor loop #2392: job 0:6966860551 is in state 'finished'
[2026-01-12 12:48:09] 2026-01-12 17:47:15,919 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 12:48:09] 2026-01-12 17:47:17,510 | INFO     | time since job start (31867s) is within the limit (349056.0s)
[2026-01-12 12:48:09] 2026-01-12 17:47:17,550 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-12 12:48:09] 2026-01-12 17:47:17,554 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2026-01-12 12:48:09] 2026-01-12 17:47:17,556 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6966860551/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 12:48:09] 2026-01-12 17:47:17,556 | INFO     | extracted standard info from prmon json
[2026-01-12 12:48:09] 2026-01-12 17:47:17,556 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 12:48:09] 2026-01-12 17:47:17,556 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 12:48:09] 2026-01-12 17:47:17,564 | INFO     | fitting pss+swap vs Time
[2026-01-12 12:48:09] 2026-01-12 17:47:17,565 | INFO     | sum of square deviations: 44105082706.12447
[2026-01-12 12:48:09] 2026-01-12 17:47:17,570 | INFO     | sum of deviations: 686390028613.6038
[2026-01-12 12:48:09] 2026-01-12 17:47:17,571 | INFO     | mean x: 1768224097.52682
[2026-01-12 12:48:09] 2026-01-12 17:47:17,571 | INFO     | mean y: 4108187.706896552
[2026-01-12 12:48:09] 2026-01-12 17:47:17,571 | INFO     | intersect: -27514066916.59153
[2026-01-12 12:48:09] 2026-01-12 17:47:17,571 | INFO     | chi2: 5.8174656049402085
[2026-01-12 12:48:09] 2026-01-12 17:47:17,572 | INFO     | sum of square deviations: 42849798323.62082
[2026-01-12 12:48:09] 2026-01-12 17:47:17,577 | INFO     | sum of deviations: 927908046485.3287
[2026-01-12 12:48:09] 2026-01-12 17:47:17,578 | INFO     | mean x: 1768223945.0270793
[2026-01-12 12:48:09] 2026-01-12 17:47:17,578 | INFO     | mean y: 4137511.762088975
[2026-01-12 12:48:09] 2026-01-12 17:47:17,578 | INFO     | intersect: -38286573081.24905
[2026-01-12 12:48:09] 2026-01-12 17:47:17,578 | INFO     | chi2: 2.823164758576888
[2026-01-12 12:48:09] 2026-01-12 17:47:17,578 | INFO     | current chi2=2.823164758576888 (change=51.47088181871761 %)
[2026-01-12 12:48:09] 2026-01-12 17:47:17,579 | INFO     | sum of square deviations: 41618560903.61719
[2026-01-12 12:48:09] 2026-01-12 17:47:17,585 | INFO     | sum of deviations: 974501954815.2345
[2026-01-12 12:48:09] 2026-01-12 17:47:17,585 | INFO     | mean x: 1768223792.5273438
[2026-01-12 12:48:09] 2026-01-12 17:47:17,585 | INFO     | mean y: 4143242.33984375
[2026-01-12 12:48:09] 2026-01-12 17:47:17,585 | INFO     | intersect: -41398959242.61276
[2026-01-12 12:48:09] 2026-01-12 17:47:17,585 | INFO     | chi2: 2.458574790935614
[2026-01-12 12:48:09] 2026-01-12 17:47:17,586 | INFO     | current chi2=2.458574790935614 (change=12.914229200886531 %)
[2026-01-12 12:48:09] 2026-01-12 17:47:17,586 | INFO     | right removable region: 511
[2026-01-12 12:48:09] 2026-01-12 17:47:17,586 | INFO     | sum of square deviations: 42849789783.62081
[2026-01-12 12:48:09] 2026-01-12 17:47:17,592 | INFO     | sum of deviations: 477596824227.5973
[2026-01-12 12:48:09] 2026-01-12 17:47:17,592 | INFO     | mean x: 1768224250.0270793
[2026-01-12 12:48:09] 2026-01-12 17:47:17,592 | INFO     | mean y: 4133496.8858800773
[2026-01-12 12:48:09] 2026-01-12 17:47:17,592 | INFO     | intersect: -19704207911.546528
[2026-01-12 12:48:09] 2026-01-12 17:47:17,593 | INFO     | chi2: 3.524990366116363
[2026-01-12 12:48:09] 2026-01-12 17:47:17,593 | INFO     | current chi2=3.524990366116363 (change=39.40676910710171 %)
[2026-01-12 12:48:09] 2026-01-12 17:47:17,593 | INFO     | sum of square deviations: 41618543823.61719
[2026-01-12 12:48:09] 2026-01-12 17:47:17,599 | INFO     | sum of deviations: 435747982275.1875
[2026-01-12 12:48:09] 2026-01-12 17:47:17,599 | INFO     | mean x: 1768224402.5273438
[2026-01-12 12:48:09] 2026-01-12 17:47:17,599 | INFO     | mean y: 4138674.84375
[2026-01-12 12:48:09] 2026-01-12 17:47:17,599 | INFO     | intersect: -18509248503.633286
[2026-01-12 12:48:09] 2026-01-12 17:47:17,600 | INFO     | chi2: 3.4912200391187485
[2026-01-12 12:48:09] 2026-01-12 17:47:17,600 | INFO     | current chi2=3.4912200391187485 (change=0.9580260792264421 %)
[2026-01-12 12:48:09] 2026-01-12 17:47:17,600 | INFO     | left removable region: 20
[2026-01-12 12:48:09] 2026-01-12 17:47:17,601 | INFO     | sum of square deviations: 36704673939.60079
[2026-01-12 12:48:09] 2026-01-12 17:47:17,606 | INFO     | sum of deviations: 661657893793.2651
[2026-01-12 12:48:09] 2026-01-12 17:47:17,606 | INFO     | mean x: 1768224372.0285132
[2026-01-12 12:48:09] 2026-01-12 17:47:17,606 | INFO     | mean y: 4182401.266802444
[2026-01-12 12:48:09] 2026-01-12 17:47:17,606 | INFO     | intersect: -31870766704.003185
[2026-01-12 12:48:09] 2026-01-12 17:47:17,607 | INFO     | chi2: 0.08803606920341969
[2026-01-12 12:48:09] 2026-01-12 17:47:17,607 | INFO     | current memory leak: 18.03 B/s (using 491 data points, chi2=0.09)
[2026-01-12 12:48:09] 2026-01-12 17:47:17,607 | INFO     | could have reported an average CPU frequency of 2455 MHz (21 samples)
[2026-01-12 12:48:09] 2026-01-12 17:47:17,607 | INFO     | ..............................
[2026-01-12 12:48:09] 2026-01-12 17:47:17,607 | INFO     | . Timing measurements:
[2026-01-12 12:48:09] 2026-01-12 17:47:17,608 | INFO     | . get job = 0 s
[2026-01-12 12:48:09] 2026-01-12 17:47:17,608 | INFO     | . initial setup = 2 s
[2026-01-12 12:48:09] 2026-01-12 17:47:17,608 | INFO     | . payload setup = 14 s
[2026-01-12 12:48:09] 2026-01-12 17:47:17,608 | INFO     | . stage-in = 0 s
[2026-01-12 12:48:09] 2026-01-12 17:47:17,608 | INFO     | . payload execution = 31818 s
[2026-01-12 12:48:09] 2026-01-12 17:47:17,608 | INFO     | . stage-out = 3 s
[2026-01-12 12:48:09] 2026-01-12 17:47:17,608 | INFO     | . log creation = 0 s
[2026-01-12 12:48:09] 2026-01-12 17:47:17,608 | INFO     | ..............................
[2026-01-12 12:48:09] 2026-01-12 17:47:17,689 | INFO     | 
[2026-01-12 12:48:09] 2026-01-12 17:47:17,689 | INFO     | job summary report
[2026-01-12 12:48:09] 2026-01-12 17:47:17,689 | INFO     | --------------------------------------------------
[2026-01-12 12:48:09] 2026-01-12 17:47:17,689 | INFO     | PanDA job id: 6966860551
[2026-01-12 12:48:09] 2026-01-12 17:47:17,690 | INFO     | task id: 48187943
[2026-01-12 12:48:09] 2026-01-12 17:47:17,690 | INFO     | errors: (none)
[2026-01-12 12:48:09] 2026-01-12 17:47:17,690 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 12:48:09] 2026-01-12 17:47:17,690 | INFO     | pilot state: finished 
[2026-01-12 12:48:09] 2026-01-12 17:47:17,690 | INFO     | transexitcode: 0
[2026-01-12 12:48:09] 2026-01-12 17:47:17,690 | INFO     | exeerrorcode: 0
[2026-01-12 12:48:09] 2026-01-12 17:47:17,691 | INFO     | exeerrordiag: 
[2026-01-12 12:48:09] 2026-01-12 17:47:17,691 | INFO     | exitcode: 0
[2026-01-12 12:48:09] 2026-01-12 17:47:17,691 | INFO     | exitmsg: OK
[2026-01-12 12:48:09] 2026-01-12 17:47:17,691 | INFO     | cpuconsumptiontime: 364703 s
[2026-01-12 12:48:09] 2026-01-12 17:47:17,691 | INFO     | nevents: 2050
[2026-01-12 12:48:09] 2026-01-12 17:47:17,691 | INFO     | neventsw: 0
[2026-01-12 12:48:09] 2026-01-12 17:47:17,692 | INFO     | pid: 13391
[2026-01-12 12:48:09] 2026-01-12 17:47:17,692 | INFO     | pgrp: 13391
[2026-01-12 12:48:09] 2026-01-12 17:47:17,692 | INFO     | corecount: 12
[2026-01-12 12:48:09] 2026-01-12 17:47:17,692 | INFO     | event service: False
[2026-01-12 12:48:09] 2026-01-12 17:47:17,692 | INFO     | sizes: {0: 2284394, 1: 2284649, 6: 2284911, 12: 2284939, 31837: 2343383, 31843: 2352381, 31845: 2352565, 31851: 2352811}
[2026-01-12 12:48:09] 2026-01-12 17:47:17,692 | INFO     | --------------------------------------------------
[2026-01-12 12:48:09] 2026-01-12 17:47:17,693 | INFO     | 
[2026-01-12 12:48:09] 2026-01-12 17:47:17,693 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-12 12:48:09] 2026-01-12 17:47:17,715 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,715 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,715 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,716 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,716 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,716 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,716 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,716 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,716 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,717 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,717 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,717 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,717 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,717 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,717 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,718 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,718 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,718 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 12:48:09] 2026-01-12 17:47:17,718 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,718 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 12:48:09] 2026-01-12 17:47:17,719 | INFO     | job 6966860551 has completed (purged errors)
[2026-01-12 12:48:09] 2026-01-12 17:47:17,719 | INFO     | overall cleanup function is called
[2026-01-12 12:48:09] 2026-01-12 17:47:18,732 | INFO     | --- collectZombieJob: --- 10, [13391]
[2026-01-12 12:48:09] 2026-01-12 17:47:18,732 | INFO     | zombie collector waiting for pid 13391
[2026-01-12 12:48:09] 2026-01-12 17:47:18,733 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 12:48:09] 2026-01-12 17:47:18,733 | INFO     | collected zombie processes
[2026-01-12 12:48:09] 2026-01-12 17:47:18,733 | INFO     | will attempt to kill all subprocesses of pid=13391
[2026-01-12 12:48:09] 2026-01-12 17:47:18,824 | INFO     | process IDs to be killed: [13391] (in reverse order)
[2026-01-12 12:48:09] 2026-01-12 17:47:18,873 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 12:48:09] 2026-01-12 17:47:18,873 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 12:48:09] 2026-01-12 17:47:18,876 | INFO     | did not find any defunct processes belonging to 13391
[2026-01-12 12:48:09] 2026-01-12 17:47:18,879 | INFO     | did not find any defunct processes belonging to 13391
[2026-01-12 12:48:09] 2026-01-12 17:47:18,880 | INFO     | ready for new job
[2026-01-12 12:48:09] 2026-01-12 17:47:18,880 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 12:48:09] 2026-01-12 17:47:18,883 | INFO     | ***************************************
[2026-01-12 12:48:09] 2026-01-12 17:47:18,883 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 12:48:09] 2026-01-12 17:47:18,883 | INFO     | ***************************************
[2026-01-12 12:48:09] 2026-01-12 17:47:18,883 | INFO     | 
[2026-01-12 12:48:09] 2026-01-12 17:47:18,884 | INFO     | architecture information:
[2026-01-12 12:48:09] 2026-01-12 17:47:18,884 | INFO     | executing command: cat /etc/os-release
[2026-01-12 12:48:09] 2026-01-12 17:47:18,899 | INFO     | cat /etc/os-release:
[2026-01-12 12:48:09] NAME="CentOS Linux"
[2026-01-12 12:48:09] VERSION="7 (Core)"
[2026-01-12 12:48:09] ID="centos"
[2026-01-12 12:48:09] ID_LIKE="rhel fedora"
[2026-01-12 12:48:09] VERSION_ID="7"
[2026-01-12 12:48:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 12:48:09] ANSI_COLOR="0;31"
[2026-01-12 12:48:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 12:48:09] HOME_URL="https://www.centos.org/"
[2026-01-12 12:48:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 12:48:09] 
[2026-01-12 12:48:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 12:48:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 12:48:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 12:48:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 12:48:09] 
[2026-01-12 12:48:09] 2026-01-12 17:47:18,899 | INFO     | ***************************************
[2026-01-12 12:48:09] 2026-01-12 17:47:19,402 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-12 12:48:09] 2026-01-12 17:47:19,417 | INFO     | sufficient remaining disk space (28177334272 B)
[2026-01-12 12:48:09] 2026-01-12 17:47:19,417 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 12:48:09] 2026-01-12 17:47:19,417 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 12:48:09] 2026-01-12 17:47:19,417 | INFO     | update_server=False
[2026-01-12 12:48:09] 2026-01-12 17:47:19,418 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 12:48:09] 2026-01-12 17:47:19,418 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 12:48:09] 2026-01-12 17:47:19,418 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-12 12:48:09] 2026-01-12 17:47:19,418 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 12:48:09] 2026-01-12 17:47:19,419 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 12:48:09] 2026-01-12 17:47:19,419 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 12:48:09] 2026-01-12 17:47:19,423 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 12:48:09] 2026-01-12 17:47:19,423 | INFO     | aborting loop
[2026-01-12 12:48:09] 2026-01-12 17:47:19,746 | INFO     | all data control threads have been joined
[2026-01-12 12:48:09] 2026-01-12 17:47:19,817 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 12:48:09] 2026-01-12 17:47:20,348 | INFO     | all payload control threads have been joined
[2026-01-12 12:48:09] 2026-01-12 17:47:20,423 | INFO     | [job] retrieve thread has finished
[2026-01-12 12:48:09] 2026-01-12 17:47:20,424 | INFO     | [job] queue monitor thread has finished
[2026-01-12 12:48:09] 2026-01-12 17:47:20,428 | INFO     | [job] job monitor thread has finished
[2026-01-12 12:48:09] 2026-01-12 17:47:20,752 | INFO     | [data] control thread has finished
[2026-01-12 12:48:09] 2026-01-12 17:47:20,838 | INFO     | [job] validate thread has finished
[2026-01-12 12:48:09] 2026-01-12 17:47:20,908 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 12:48:09] 2026-01-12 17:47:20,963 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 12:48:09] 2026-01-12 17:47:21,054 | INFO     | all job control threads have been joined
[2026-01-12 12:48:09] 2026-01-12 17:47:21,072 | INFO     | [payload] validate_post thread has finished
[2026-01-12 12:48:09] 2026-01-12 17:47:21,354 | INFO     | [payload] control thread has finished
[2026-01-12 12:48:09] 2026-01-12 17:47:21,581 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 12:48:09] 2026-01-12 17:47:21,616 | INFO     | [payload] failed_post thread has finished
[2026-01-12 12:48:09] 2026-01-12 17:47:21,738 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 12:48:09] 2026-01-12 17:47:21,771 | INFO     | [data] copytool_in thread has finished
[2026-01-12 12:48:09] 2026-01-12 17:47:21,823 | INFO     | [data] copytool_out thread has finished
[2026-01-12 12:48:09] 2026-01-12 17:47:22,015 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 12:48:09] 2026-01-12 17:47:22,055 | INFO     | [job] control thread has finished
[2026-01-12 12:48:09] 2026-01-12 17:47:26,021 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 12:48:09] 2026-01-12 17:48:02,679 | INFO     | [monitor] cgroup control has ended
[2026-01-12 12:48:09] 2026-01-12 17:48:03,684 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139965474862912)>', '<ExcThread(monitor, started 139964419385088)>']
[2026-01-12 12:48:09] 2026-01-12 17:48:04,606 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 12:48:09] 2026-01-12 17:48:04,606 | INFO     | [monitor] control thread has ended
[2026-01-12 12:48:09] 2026-01-12 17:48:08,710 | INFO     | all workflow threads have been joined
[2026-01-12 12:48:09] 2026-01-12 17:48:08,710 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 12:48:09] 2026-01-12 17:48:08,710 | INFO     | traces error code: 0
[2026-01-12 12:48:09] 2026-01-12 17:48:08,711 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 12:48:09] 2026-01-12 17:48:08,805 [wrapper] ==== pilot stdout END ====
[2026-01-12 12:48:09] 2026-01-12 17:48:08,809 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 12:48:09] 2026-01-12 17:48:08,813 [wrapper] pilotpid: 6359
[2026-01-12 12:48:09] 2026-01-12 17:48:08,816 [wrapper] Pilot exit status: 0
[2026-01-12 12:48:09] 2026-01-12 17:48:08,830 [wrapper] pandaids: 6966860551
[2026-01-12 12:48:09] 2026-01-12 17:48:08,875 [wrapper] cleanup supervisor_pilot   850 6360
[2026-01-12 12:48:09] 2026-01-12 17:48:08,879 [wrapper] Test setup, not cleaning
[2026-01-12 12:48:09] 2026-01-12 17:48:08,883 [wrapper] apfmon messages muted
[2026-01-12 12:48:09] 2026-01-12 17:48:08,887 [wrapper] ==== wrapper stdout END ====
[2026-01-12 12:48:09] 2026-01-12 17:48:08,891 [wrapper] ==== wrapper stderr END ====
[2026-01-12 12:48:09]  *** Error codes and diagnostics ***
[2026-01-12 12:48:09]     "exeErrorCode": 0,
[2026-01-12 12:48:09]     "exeErrorDiag": "",
[2026-01-12 12:48:09]     "pilotErrorCode": 0,
[2026-01-12 12:48:09]     "pilotErrorDiag": "",
[2026-01-12 12:48:09]  *** Listing of results directory ***
[2026-01-12 12:48:09] total 1460668
[2026-01-12 12:48:09] -rw-r--r-- 1 boincer umatlas     579449 Jan 12 03:50 pilot3.tar.gz
[2026-01-12 12:48:09] -rw-r--r-- 1 boincer umatlas       5112 Jan 12 03:53 queuedata.json
[2026-01-12 12:48:09] -rwx------ 1 boincer umatlas      36322 Jan 12 03:54 runpilot2-wrapper.sh
[2026-01-12 12:48:09] -rw-r--r-- 1 boincer umatlas        100 Jan 12 03:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 12:48:09] -rwxr-xr-x 1 boincer umatlas       7986 Jan 12 03:55 run_atlas
[2026-01-12 12:48:09] -rw-r--r-- 1 boincer umatlas        105 Jan 12 03:55 job.xml
[2026-01-12 12:48:09] -rw-r--r-- 2 boincer umatlas  319236279 Jan 12 03:55 EVNT.48118027._000176.pool.root.1
[2026-01-12 12:48:09] -rw-r--r-- 2 boincer umatlas      15847 Jan 12 03:55 start_atlas.sh
[2026-01-12 12:48:09] drwxrwx--x 2 boincer umatlas       4096 Jan 12 03:55 shared
[2026-01-12 12:48:09] -rw-r--r-- 2 boincer umatlas     592615 Jan 12 03:55 input.tar.gz
[2026-01-12 12:48:09] -rw-r--r-- 1 boincer umatlas          0 Jan 12 03:55 boinc_lockfile
[2026-01-12 12:48:09] -rw-r--r-- 1 boincer umatlas       2896 Jan 12 03:55 pandaJob.out
[2026-01-12 12:48:09] -rw------- 1 boincer umatlas         57 Jan 12 03:55 setup.sh.local
[2026-01-12 12:48:09] -rw------- 1 boincer umatlas     987688 Jan 12 03:56 agis_schedconf.cvmfs.json
[2026-01-12 12:48:09] drwx------ 5 boincer umatlas       4096 Jan 12 03:56 pilot3
[2026-01-12 12:48:09] -rw-r--r-- 1 boincer umatlas        532 Jan 12 12:38 boinc_task_state.xml
[2026-01-12 12:48:09] -rw-r--r-- 1 boincer umatlas       5955 Jan 12 12:40 init_data.xml
[2026-01-12 12:48:09] -rw------- 1 boincer umatlas 1158368977 Jan 12 12:46 HITS.48187943._000857.pool.root.1
[2026-01-12 12:48:09] -rw------- 1 boincer umatlas       1062 Jan 12 12:47 memory_monitor_summary.json
[2026-01-12 12:48:09] -rw------- 1 boincer umatlas    1516240 Jan 12 12:47 agis_ddmendpoints.agis.ALL.json
[2026-01-12 12:48:09] -rw------- 1 boincer umatlas    2630872 Jan 12 12:47 log.48187943._000857.job.log.tgz.1
[2026-01-12 12:48:09] -rw------- 1 boincer umatlas         95 Jan 12 12:47 pilot_heartbeat.json
[2026-01-12 12:48:09] -rw------- 1 boincer umatlas      27260 Jan 12 12:47 heartbeat.json
[2026-01-12 12:48:09] -rw-r--r-- 1 boincer umatlas       8192 Jan 12 12:47 boinc_mmap_file
[2026-01-12 12:48:09] -rw-r--r-- 1 boincer umatlas         29 Jan 12 12:47 wrapper_checkpoint.txt
[2026-01-12 12:48:09] -rw------- 1 boincer umatlas       4552 Jan 12 12:48 pilotlog.txt
[2026-01-12 12:48:09] -rw------- 1 boincer umatlas    4450909 Jan 12 12:48 log.48187943._000857.job.log.1
[2026-01-12 12:48:09] -rw------- 1 boincer umatlas        353 Jan 12 12:48 output.list
[2026-01-12 12:48:09] -rw-r--r-- 1 boincer umatlas        620 Jan 12 12:48 runtime_log
[2026-01-12 12:48:09] -rw------- 1 boincer umatlas    7116800 Jan 12 12:48 result.tar.gz
[2026-01-12 12:48:09] -rw-r--r-- 1 boincer umatlas       9345 Jan 12 12:48 runtime_log.err
[2026-01-12 12:48:09] -rw------- 1 boincer umatlas        672 Jan 12 12:48 J97KDmBsSz8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmmhKDmPrxolm.diag
[2026-01-12 12:48:09] -rw-r--r-- 1 boincer umatlas      21127 Jan 12 12:48 stderr.txt
[2026-01-12 12:48:09] HITS file was successfully produced:
[2026-01-12 12:48:09] -rw------- 1 boincer umatlas 1158368977 Jan 12 12:46 shared/HITS.pool.root.1
[2026-01-12 12:48:09]  *** Contents of shared directory: ***
[2026-01-12 12:48:09] total 1450532
[2026-01-12 12:48:09] -rw-r--r-- 2 boincer umatlas  319236279 Jan 12 03:55 ATLAS.root_0
[2026-01-12 12:48:09] -rw-r--r-- 2 boincer umatlas      15847 Jan 12 03:55 start_atlas.sh
[2026-01-12 12:48:09] -rw-r--r-- 2 boincer umatlas     592615 Jan 12 03:55 input.tar.gz
[2026-01-12 12:48:09] -rw------- 1 boincer umatlas 1158368977 Jan 12 12:46 HITS.pool.root.1
[2026-01-12 12:48:09] -rw------- 1 boincer umatlas    7116800 Jan 12 12:48 result.tar.gz
12:48:10 (2547): run_atlas exited; CPU time 351899.471474
12:48:10 (2547): called boinc_finish(0)

</stderr_txt>
]]>

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