Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:56:29 (539295): wrapper (7.7.26015): starting
03:56:29 (539295): wrapper: running run_atlas (--nthreads 11)
[2026-01-12 03:56:29] Arguments: --nthreads 11
[2026-01-12 03:56:29] Threads: 11
[2026-01-12 03:56:29] Checking for CVMFS
[2026-01-12 03:56:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 03:56:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 03:56:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 03:56:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 03:56:30] 2.13.3.0 12846 97471 173008 155045 2 387 26298525 32935936 17453 16776704 0 426886550 99.469 611657377 38397 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-12 03:56:30] CVMFS is ok
[2026-01-12 03:56:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 03:56:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 03:56:30] Further information can be found at the LHC@home message board.
[2026-01-12 03:56:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 03:56:30] Checking for apptainer binary...
[2026-01-12 03:56:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 03:56:30] Running /usr/bin/apptainer --version
[2026-01-12 03:56:30] apptainer version 1.4.5-2.el9
[2026-01-12 03:56:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 03:56:30] c7-16-9.aglt2.org
[2026-01-12 03:56:30] apptainer works
[2026-01-12 03:56:30] Set ATHENA_PROC_NUMBER=11
[2026-01-12 03:56:30] Set ATHENA_CORE_NUMBER=11
[2026-01-12 03:56:30] Starting ATLAS job with PandaID=6966860630
[2026-01-12 03:56:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:40:05 (539295): BOINC client no longer exists - exiting
04:40:05 (539295): timer handler: client dead, exiting
04:50:09 (733062): wrapper (7.7.26015): starting
04:50:09 (733062): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 04:50:09] Arguments: --nthreads 8
[2026-01-12 04:50:09] Threads: 8
[2026-01-12 04:50:09] This job has been restarted, cleaning up previous attempt
[2026-01-12 04:50:09] Checking for CVMFS
[2026-01-12 04:50:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 04:50:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 04:50:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 04:50:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 04:50:10] 2.13.3.0 12846 97525 168712 155047 0 366 26744911 32935937 17249 16776704 0 427215513 99.469 611771074 38395 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-12 04:50:10] CVMFS is ok
[2026-01-12 04:50:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 04:50:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 04:50:10] Further information can be found at the LHC@home message board.
[2026-01-12 04:50:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 04:50:10] Checking for apptainer binary...
[2026-01-12 04:50:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 04:50:10] Running /usr/bin/apptainer --version
[2026-01-12 04:50:10] apptainer version 1.4.5-2.el9
[2026-01-12 04:50:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 04:50:10] c7-16-9.aglt2.org
[2026-01-12 04:50:10] apptainer works
[2026-01-12 04:50:10] Set ATHENA_PROC_NUMBER=8
[2026-01-12 04:50:10] Set ATHENA_CORE_NUMBER=8
[2026-01-12 04:50:10] Starting ATLAS job with PandaID=6966860630
[2026-01-12 04:50:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 04:11:02]  *** The last 200 lines of the pilot log: ***
[2026-01-13 04:11:02] 2026-01-13 09:09:52,142 | INFO     | .. there are 25 such processes running
[2026-01-13 04:11:02] 2026-01-13 09:09:53,142 | INFO     | time since job start (83963s) is within the limit (349056.0s)
[2026-01-13 04:11:02] 2026-01-13 09:09:53,448 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-13 04:11:02] 2026-01-13 09:09:53,455 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3121.872447916667
[2026-01-13 04:11:02] 2026-01-13 09:09:53,468 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6966860630/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 04:11:02] 2026-01-13 09:09:53,468 | INFO     | extracted standard info from prmon json
[2026-01-13 04:11:02] 2026-01-13 09:09:53,468 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 04:11:02] 2026-01-13 09:09:53,469 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 04:11:02] 2026-01-13 09:09:53,486 | INFO     | fitting pss+swap vs Time
[2026-01-13 04:11:02] 2026-01-13 09:09:53,488 | INFO     | sum of square deviations: 807933932175.8945
[2026-01-13 04:11:02] 2026-01-13 09:09:53,562 | INFO     | sum of deviations: 6750471784393.412
[2026-01-13 04:11:02] 2026-01-13 09:09:53,562 | INFO     | mean x: 1768253423.284157
[2026-01-13 04:11:02] 2026-01-13 09:09:53,562 | INFO     | mean y: 3338842.99127907
[2026-01-13 04:11:02] 2026-01-13 09:09:53,563 | INFO     | intersect: -14770820733.881239
[2026-01-13 04:11:02] 2026-01-13 09:09:53,564 | INFO     | chi2: 10.440400187302078
[2026-01-13 04:11:02] 2026-01-13 09:09:53,565 | INFO     | sum of square deviations: 799160498861.9957
[2026-01-13 04:11:02] 2026-01-13 09:09:53,597 | INFO     | sum of deviations: 7346307539086.632
[2026-01-13 04:11:02] 2026-01-13 09:09:53,597 | INFO     | mean x: 1768253270.7943108
[2026-01-13 04:11:02] 2026-01-13 09:09:53,597 | INFO     | mean y: 3349197.0802334063
[2026-01-13 04:11:02] 2026-01-13 09:09:53,598 | INFO     | intersect: -16251373543.531677
[2026-01-13 04:11:02] 2026-01-13 09:09:53,599 | INFO     | chi2: 6.6061692002816566
[2026-01-13 04:11:02] 2026-01-13 09:09:53,599 | INFO     | current chi2=6.6061692002816566 (change=36.72494270558447 %)
[2026-01-13 04:11:02] 2026-01-13 09:09:53,600 | INFO     | sum of square deviations: 790449332060.0381
[2026-01-13 04:11:02] 2026-01-13 09:09:53,636 | INFO     | sum of deviations: 7653205267826.146
[2026-01-13 04:11:02] 2026-01-13 09:09:53,637 | INFO     | mean x: 1768253118.2913616
[2026-01-13 04:11:02] 2026-01-13 09:09:53,637 | INFO     | mean y: 3354562.9619326503
[2026-01-13 04:11:02] 2026-01-13 09:09:53,637 | INFO     | intersect: -17117039535.529865
[2026-01-13 04:11:02] 2026-01-13 09:09:53,638 | INFO     | chi2: 5.029376256806834
[2026-01-13 04:11:02] 2026-01-13 09:09:53,639 | INFO     | current chi2=5.029376256806834 (change=23.868491642745024 %)
[2026-01-13 04:11:02] 2026-01-13 09:09:53,639 | INFO     | right removable region: 1365
[2026-01-13 04:11:02] 2026-01-13 09:09:53,640 | INFO     | sum of square deviations: 799158161951.996
[2026-01-13 04:11:02] 2026-01-13 09:09:53,678 | INFO     | sum of deviations: 6184199228982.958
[2026-01-13 04:11:02] 2026-01-13 09:09:53,679 | INFO     | mean x: 1768253575.7943108
[2026-01-13 04:11:02] 2026-01-13 09:09:53,679 | INFO     | mean y: 3348680.9183078045
[2026-01-13 04:11:02] 2026-01-13 09:09:53,679 | INFO     | intersect: -13680090869.224703
[2026-01-13 04:11:02] 2026-01-13 09:09:53,680 | INFO     | chi2: 7.221565927709819
[2026-01-13 04:11:02] 2026-01-13 09:09:53,680 | INFO     | current chi2=7.221565927709819 (change=30.830563980747595 %)
[2026-01-13 04:11:02] 2026-01-13 09:09:53,681 | INFO     | sum of square deviations: 790446160365.3157
[2026-01-13 04:11:02] 2026-01-13 09:09:53,723 | INFO     | sum of deviations: 5815241106757.924
[2026-01-13 04:11:02] 2026-01-13 09:09:53,723 | INFO     | mean x: 1768253728.3045387
[2026-01-13 04:11:02] 2026-01-13 09:09:53,723 | INFO     | mean y: 3355139.625183016
[2026-01-13 04:11:02] 2026-01-13 09:09:53,723 | INFO     | intersect: -13005528050.17001
[2026-01-13 04:11:02] 2026-01-13 09:09:53,724 | INFO     | chi2: 6.105677201396468
[2026-01-13 04:11:02] 2026-01-13 09:09:53,725 | INFO     | current chi2=6.105677201396468 (change=15.452171142433002 %)
[2026-01-13 04:11:02] 2026-01-13 09:09:53,725 | INFO     | left removable region: 20
[2026-01-13 04:11:02] 2026-01-13 09:09:53,726 | INFO     | sum of square deviations: 754550357620.4573
[2026-01-13 04:11:02] 2026-01-13 09:09:53,761 | INFO     | sum of deviations: 6341952169294.983
[2026-01-13 04:11:02] 2026-01-13 09:09:53,762 | INFO     | mean x: 1768253697.8200743
[2026-01-13 04:11:02] 2026-01-13 09:09:53,762 | INFO     | mean y: 3377406.756133829
[2026-01-13 04:11:02] 2026-01-13 09:09:53,762 | INFO     | intersect: -14858692780.472757
[2026-01-13 04:11:02] 2026-01-13 09:09:53,763 | INFO     | chi2: 0.13266055271464805
[2026-01-13 04:11:02] 2026-01-13 09:09:53,763 | INFO     | current memory leak: 8.40 B/s (using 1345 data points, chi2=0.13)
[2026-01-13 04:11:02] 2026-01-13 09:09:53,765 | INFO     | could have reported an average CPU frequency of 3184 MHz (50 samples)
[2026-01-13 04:11:02] 2026-01-13 09:09:53,766 | INFO     | ..............................
[2026-01-13 04:11:02] 2026-01-13 09:09:53,766 | INFO     | . Timing measurements:
[2026-01-13 04:11:02] 2026-01-13 09:09:53,766 | INFO     | . get job = 0 s
[2026-01-13 04:11:02] 2026-01-13 09:09:53,766 | INFO     | . initial setup = 1 s
[2026-01-13 04:11:02] 2026-01-13 09:09:53,766 | INFO     | . payload setup = 19 s
[2026-01-13 04:11:02] 2026-01-13 09:09:53,766 | INFO     | . stage-in = 0 s
[2026-01-13 04:11:02] 2026-01-13 09:09:53,766 | INFO     | . payload execution = 83903 s
[2026-01-13 04:11:02] 2026-01-13 09:09:53,766 | INFO     | . stage-out = 5 s
[2026-01-13 04:11:02] 2026-01-13 09:09:53,766 | INFO     | . log creation = 0 s
[2026-01-13 04:11:02] 2026-01-13 09:09:53,767 | INFO     | ..............................
[2026-01-13 04:11:02] 2026-01-13 09:09:53,879 | INFO     | 
[2026-01-13 04:11:02] 2026-01-13 09:09:53,880 | INFO     | job summary report
[2026-01-13 04:11:02] 2026-01-13 09:09:53,880 | INFO     | --------------------------------------------------
[2026-01-13 04:11:02] 2026-01-13 09:09:53,880 | INFO     | PanDA job id: 6966860630
[2026-01-13 04:11:02] 2026-01-13 09:09:53,880 | INFO     | task id: 48187943
[2026-01-13 04:11:02] 2026-01-13 09:09:53,880 | INFO     | errors: (none)
[2026-01-13 04:11:02] 2026-01-13 09:09:53,880 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 04:11:02] 2026-01-13 09:09:53,880 | INFO     | pilot state: finished 
[2026-01-13 04:11:02] 2026-01-13 09:09:53,880 | INFO     | transexitcode: 0
[2026-01-13 04:11:02] 2026-01-13 09:09:53,881 | INFO     | exeerrorcode: 0
[2026-01-13 04:11:02] 2026-01-13 09:09:53,881 | INFO     | exeerrordiag: 
[2026-01-13 04:11:02] 2026-01-13 09:09:53,881 | INFO     | exitcode: 0
[2026-01-13 04:11:02] 2026-01-13 09:09:53,881 | INFO     | exitmsg: OK
[2026-01-13 04:11:02] 2026-01-13 09:09:53,881 | INFO     | cpuconsumptiontime: 233435 s
[2026-01-13 04:11:02] 2026-01-13 09:09:53,881 | INFO     | nevents: 2050
[2026-01-13 04:11:02] 2026-01-13 09:09:53,881 | INFO     | neventsw: 0
[2026-01-13 04:11:02] 2026-01-13 09:09:53,881 | INFO     | pid: 788071
[2026-01-13 04:11:02] 2026-01-13 09:09:53,881 | INFO     | pgrp: 788071
[2026-01-13 04:11:02] 2026-01-13 09:09:53,881 | INFO     | corecount: 8
[2026-01-13 04:11:02] 2026-01-13 09:09:53,881 | INFO     | event service: False
[2026-01-13 04:11:02] 2026-01-13 09:09:53,881 | INFO     | sizes: {0: 2286983, 8: 2287277, 11: 2287305, 83926: 2371551, 83933: 2379437, 83934: 2379493, 83942: 2379867}
[2026-01-13 04:11:02] 2026-01-13 09:09:53,881 | INFO     | --------------------------------------------------
[2026-01-13 04:11:02] 2026-01-13 09:09:53,882 | INFO     | 
[2026-01-13 04:11:02] 2026-01-13 09:09:53,882 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-13 04:11:02] 2026-01-13 09:09:53,925 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,926 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,926 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,926 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,926 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,926 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,926 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,926 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,926 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,926 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,927 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,927 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,927 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,927 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,927 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,927 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,927 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,927 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 04:11:02] 2026-01-13 09:09:53,927 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,927 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 04:11:02] 2026-01-13 09:09:53,927 | INFO     | job 6966860630 has completed (purged errors)
[2026-01-13 04:11:02] 2026-01-13 09:09:53,928 | INFO     | overall cleanup function is called
[2026-01-13 04:11:02] 2026-01-13 09:09:55,029 | INFO     | --- collectZombieJob: --- 10, [788071]
[2026-01-13 04:11:02] 2026-01-13 09:09:55,029 | INFO     | zombie collector waiting for pid 788071
[2026-01-13 04:11:02] 2026-01-13 09:09:55,029 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 04:11:02] 2026-01-13 09:09:55,029 | INFO     | collected zombie processes
[2026-01-13 04:11:02] 2026-01-13 09:09:55,029 | INFO     | will attempt to kill all subprocesses of pid=788071
[2026-01-13 04:11:02] 2026-01-13 09:09:55,728 | INFO     | process IDs to be killed: [788071] (in reverse order)
[2026-01-13 04:11:02] 2026-01-13 09:09:55,869 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 04:11:02] 2026-01-13 09:09:55,870 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 04:11:02] 2026-01-13 09:09:55,890 | INFO     | did not find any defunct processes belonging to 788071
[2026-01-13 04:11:02] 2026-01-13 09:09:55,909 | INFO     | did not find any defunct processes belonging to 788071
[2026-01-13 04:11:02] 2026-01-13 09:09:55,910 | INFO     | ready for new job
[2026-01-13 04:11:02] 2026-01-13 09:09:55,910 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 04:11:02] 2026-01-13 09:09:55,927 | INFO     | ***************************************
[2026-01-13 04:11:02] 2026-01-13 09:09:55,927 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 04:11:02] 2026-01-13 09:09:55,927 | INFO     | ***************************************
[2026-01-13 04:11:02] 2026-01-13 09:09:55,928 | INFO     | 
[2026-01-13 04:11:02] 2026-01-13 09:09:55,942 | INFO     | architecture information:
[2026-01-13 04:11:02] 2026-01-13 09:09:55,957 | INFO     | executing command: cat /etc/os-release
[2026-01-13 04:11:02] 2026-01-13 09:09:56,043 | INFO     | cat /etc/os-release:
[2026-01-13 04:11:02] NAME="CentOS Linux"
[2026-01-13 04:11:02] VERSION="7 (Core)"
[2026-01-13 04:11:02] ID="centos"
[2026-01-13 04:11:02] ID_LIKE="rhel fedora"
[2026-01-13 04:11:02] VERSION_ID="7"
[2026-01-13 04:11:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 04:11:02] ANSI_COLOR="0;31"
[2026-01-13 04:11:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 04:11:02] HOME_URL="https://www.centos.org/"
[2026-01-13 04:11:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 04:11:02] 
[2026-01-13 04:11:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 04:11:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 04:11:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 04:11:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 04:11:02] 
[2026-01-13 04:11:02] 2026-01-13 09:09:56,043 | INFO     | ***************************************
[2026-01-13 04:11:02] 2026-01-13 09:09:56,547 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-13 04:11:02] 2026-01-13 09:09:56,617 | INFO     | sufficient remaining disk space (67777855488 B)
[2026-01-13 04:11:02] 2026-01-13 09:09:56,617 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 04:11:02] 2026-01-13 09:09:56,617 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 04:11:02] 2026-01-13 09:09:56,617 | INFO     | update_server=False
[2026-01-13 04:11:02] 2026-01-13 09:09:56,618 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 04:11:02] 2026-01-13 09:09:56,618 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 04:11:02] 2026-01-13 09:09:56,737 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 04:11:02] 2026-01-13 09:09:56,858 | INFO     | all job control threads have been joined
[2026-01-13 04:11:02] 2026-01-13 09:09:56,942 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-13 04:11:02] 2026-01-13 09:09:56,942 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-13 04:11:02] 2026-01-13 09:09:56,942 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 04:11:02] 2026-01-13 09:09:56,942 | INFO     | will abort loop
[2026-01-13 04:11:02] 2026-01-13 09:09:57,410 | INFO     | all data control threads have been joined
[2026-01-13 04:11:02] 2026-01-13 09:09:57,423 | INFO     | all payload control threads have been joined
[2026-01-13 04:11:02] 2026-01-13 09:09:57,623 | INFO     | [job] retrieve thread has finished
[2026-01-13 04:11:02] 2026-01-13 09:09:57,874 | INFO     | [job] control thread has finished
[2026-01-13 04:11:02] 2026-01-13 09:09:57,946 | INFO     | [payload] validate_post thread has finished
[2026-01-13 04:11:02] 2026-01-13 09:09:57,948 | INFO     | [job] job monitor thread has finished
[2026-01-13 04:11:02] 2026-01-13 09:09:58,078 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 04:11:02] 2026-01-13 09:09:58,417 | INFO     | [data] control thread has finished
[2026-01-13 04:11:02] 2026-01-13 09:09:58,437 | INFO     | [payload] control thread has finished
[2026-01-13 04:11:02] 2026-01-13 09:09:58,596 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 04:11:02] 2026-01-13 09:09:58,600 | INFO     | [data] copytool_in thread has finished
[2026-01-13 04:11:02] 2026-01-13 09:09:58,615 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 04:11:02] 2026-01-13 09:09:58,618 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 04:11:02] 2026-01-13 09:09:58,638 | INFO     | [data] copytool_out thread has finished
[2026-01-13 04:11:02] 2026-01-13 09:09:58,725 | INFO     | [job] validate thread has finished
[2026-01-13 04:11:02] 2026-01-13 09:09:58,894 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 04:11:02] 2026-01-13 09:09:58,921 | INFO     | [payload] failed_post thread has finished
[2026-01-13 04:11:02] 2026-01-13 09:09:59,900 | INFO     | [job] queue monitor thread has finished
[2026-01-13 04:11:02] 2026-01-13 09:10:00,752 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 04:11:02] 2026-01-13 09:10:28,583 | INFO     | PID=752194 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-13 04:11:02] 2026-01-13 09:10:28,583 | INFO     | .. there are 25 such processes running
[2026-01-13 04:11:02] 2026-01-13 09:10:28,610 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 04:11:02] 2026-01-13 09:10:28,610 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 04:11:02] 2026-01-13 09:10:28,610 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 04:11:02] 2026-01-13 09:10:55,446 | INFO     | [monitor] cgroup control has ended
[2026-01-13 04:11:02] 2026-01-13 09:10:55,781 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140408236259136)>', '<ExcThread(monitor, started 140407757326080)>']
[2026-01-13 04:11:02] 2026-01-13 09:10:55,855 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 04:11:02] 2026-01-13 09:10:55,855 | INFO     | [monitor] control thread has ended
[2026-01-13 04:11:02] 2026-01-13 09:11:00,807 | INFO     | all workflow threads have been joined
[2026-01-13 04:11:02] 2026-01-13 09:11:00,807 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 04:11:02] 2026-01-13 09:11:00,807 | INFO     | traces error code: 0
[2026-01-13 04:11:02] 2026-01-13 09:11:00,807 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 04:11:02] 2026-01-13 09:11:01,863 [wrapper] ==== pilot stdout END ====
[2026-01-13 04:11:02] 2026-01-13 09:11:01,866 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 04:11:02] 2026-01-13 09:11:01,869 [wrapper] pilotpid: 752194
[2026-01-13 04:11:02] 2026-01-13 09:11:01,872 [wrapper] Pilot exit status: 0
[2026-01-13 04:11:02] 2026-01-13 09:11:01,882 [wrapper] pandaids: 6966860630 6966860630
[2026-01-13 04:11:02] 2026-01-13 09:11:01,992 [wrapper] cleanup supervisor_pilot  978343 752195
[2026-01-13 04:11:02] 2026-01-13 09:11:02,000 [wrapper] Test setup, not cleaning
[2026-01-13 04:11:02] 2026-01-13 09:11:02,024 [wrapper] apfmon messages muted
[2026-01-13 04:11:02] 2026-01-13 09:11:02,057 [wrapper] ==== wrapper stdout END ====
[2026-01-13 04:11:02] 2026-01-13 09:11:02,060 [wrapper] ==== wrapper stderr END ====
[2026-01-13 04:11:02]  *** Error codes and diagnostics ***
[2026-01-13 04:11:02]     "exeErrorCode": 0,
[2026-01-13 04:11:02]     "exeErrorDiag": "",
[2026-01-13 04:11:02]     "pilotErrorCode": 0,
[2026-01-13 04:11:02]     "pilotErrorDiag": "",
[2026-01-13 04:11:02]  *** Listing of results directory ***
[2026-01-13 04:11:02] total 2435020
[2026-01-13 04:11:02] drwx------. 5 boincer umatlas       4096 Dec  3 09:30 pilot3
[2026-01-13 04:11:02] -rw-r--r--. 1 boincer umatlas     579449 Jan 12 03:50 pilot3.tar.gz
[2026-01-13 04:11:02] -rw-r--r--. 1 boincer umatlas       5112 Jan 12 03:51 queuedata.json
[2026-01-13 04:11:02] -rwx------. 1 boincer umatlas      36322 Jan 12 03:52 runpilot2-wrapper.sh
[2026-01-13 04:11:02] -rw-r--r--. 1 boincer umatlas        100 Jan 12 03:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 04:11:02] -rwxr-xr-x. 1 boincer umatlas       7986 Jan 12 03:56 run_atlas
[2026-01-13 04:11:02] -rw-r--r--. 1 boincer umatlas        105 Jan 12 03:56 job.xml
[2026-01-13 04:11:02] -rw-r--r--. 3 boincer umatlas  321229169 Jan 12 03:56 EVNT.48118027._000188.pool.root.1
[2026-01-13 04:11:02] -rw-r--r--. 3 boincer umatlas  321229169 Jan 12 03:56 ATLAS.root_0
[2026-01-13 04:11:02] -rw-r--r--. 3 boincer umatlas  320369569 Jan 12 03:56 EVNT.48118027._000189.pool.root.1
[2026-01-13 04:11:02] -rw-r--r--. 3 boincer umatlas  320369569 Jan 12 03:56 ATLAS.root_1
[2026-01-13 04:11:02] -rw-r--r--. 2 boincer umatlas      15897 Jan 12 03:56 start_atlas.sh
[2026-01-13 04:11:02] drwxrwx--x. 2 boincer umatlas       4096 Jan 12 03:56 shared
[2026-01-13 04:11:02] -rw-r--r--. 2 boincer umatlas     592708 Jan 12 03:56 input.tar.gz
[2026-01-13 04:11:02] -rw-r--r--. 1 boincer umatlas          0 Jan 12 03:56 boinc_lockfile
[2026-01-13 04:11:02] -rw-r--r--. 1 boincer umatlas       3435 Jan 12 04:50 pandaJob.out
[2026-01-13 04:11:02] -rw-------. 1 boincer umatlas         57 Jan 12 04:50 setup.sh.local
[2026-01-13 04:11:02] -rw-------. 1 boincer umatlas     987688 Jan 12 04:50 agis_schedconf.cvmfs.json
[2026-01-13 04:11:02] -rw-r--r--. 1 boincer umatlas        533 Jan 13 03:59 boinc_task_state.xml
[2026-01-13 04:11:02] -rw-r--r--. 1 boincer umatlas       6945 Jan 13 04:01 init_data.xml
[2026-01-13 04:11:02] -rw-------. 1 boincer umatlas 1178970550 Jan 13 04:06 HITS.48187943._000918.pool.root.1
[2026-01-13 04:11:02] -rw-------. 1 boincer umatlas       1069 Jan 13 04:09 memory_monitor_summary.json
[2026-01-13 04:11:02] -rw-------. 1 boincer umatlas    1516240 Jan 13 04:09 agis_ddmendpoints.agis.ALL.json
[2026-01-13 04:11:02] -rw-------. 1 boincer umatlas    2790481 Jan 13 04:09 log.48187943._000918.job.log.tgz.1
[2026-01-13 04:11:02] -rw-------. 1 boincer umatlas      28308 Jan 13 04:09 heartbeat.json
[2026-01-13 04:11:02] -rw-------. 1 boincer umatlas         96 Jan 13 04:10 pilot_heartbeat.json
[2026-01-13 04:11:02] -rw-r--r--. 1 boincer umatlas         29 Jan 13 04:10 wrapper_checkpoint.txt
[2026-01-13 04:11:02] -rw-------. 1 boincer umatlas       5009 Jan 13 04:11 pilotlog.txt
[2026-01-13 04:11:02] -rw-------. 1 boincer umatlas   10864008 Jan 13 04:11 log.48187943._000918.job.log.1
[2026-01-13 04:11:02] -rw-r--r--. 1 boincer umatlas       8192 Jan 13 04:11 boinc_mmap_file
[2026-01-13 04:11:02] -rw-------. 1 boincer umatlas        353 Jan 13 04:11 output.list
[2026-01-13 04:11:02] -rw-r--r--. 1 boincer umatlas        620 Jan 13 04:11 runtime_log
[2026-01-13 04:11:02] -rw-------. 1 boincer umatlas   13690880 Jan 13 04:11 result.tar.gz
[2026-01-13 04:11:02] -rw-r--r--. 1 boincer umatlas       9560 Jan 13 04:11 runtime_log.err
[2026-01-13 04:11:02] -rw-------. 1 boincer umatlas        790 Jan 13 04:11 1KSLDm4pSz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0FnKDmhabVjm.diag
[2026-01-13 04:11:02] -rw-r--r--. 1 boincer umatlas      23447 Jan 13 04:11 stderr.txt
[2026-01-13 04:11:02] HITS file was successfully produced:
[2026-01-13 04:11:02] -rw-------. 1 boincer umatlas 1178970550 Jan 13 04:06 shared/HITS.pool.root.1
[2026-01-13 04:11:02]  *** Contents of shared directory: ***
[2026-01-13 04:11:02] total 1791888
[2026-01-13 04:11:02] -rw-r--r--. 3 boincer umatlas  321229169 Jan 12 03:56 ATLAS.root_0
[2026-01-13 04:11:02] -rw-r--r--. 3 boincer umatlas  320369569 Jan 12 03:56 ATLAS.root_1
[2026-01-13 04:11:02] -rw-r--r--. 2 boincer umatlas      15897 Jan 12 03:56 start_atlas.sh
[2026-01-13 04:11:02] -rw-r--r--. 2 boincer umatlas     592708 Jan 12 03:56 input.tar.gz
[2026-01-13 04:11:02] -rw-------. 1 boincer umatlas 1178970550 Jan 13 04:06 HITS.pool.root.1
[2026-01-13 04:11:02] -rw-------. 1 boincer umatlas   13690880 Jan 13 04:11 result.tar.gz
04:11:23 (733062): run_atlas exited; CPU time 234063.794748
04:11:23 (733062): called boinc_finish(0)

</stderr_txt>
]]>

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