Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:56:06 (526910): wrapper (7.7.26015): starting
03:56:06 (526910): wrapper: running run_atlas (--nthreads 11)
[2026-01-12 03:56:06] Arguments: --nthreads 11
[2026-01-12 03:56:06] Threads: 11
[2026-01-12 03:56:06] Checking for CVMFS
[2026-01-12 03:56:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 03:56:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 03:56:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 03:56:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 03:56:07] 2.13.3.0 12846 97471 172264 155045 2 387 26070365 32935936 17222 16776704 0 426856364 99.469 611574623 38397 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-12 03:56:07] CVMFS is ok
[2026-01-12 03:56:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 03:56:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 03:56:07] Further information can be found at the LHC@home message board.
[2026-01-12 03:56:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 03:56:07] Checking for apptainer binary...
[2026-01-12 03:56:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 03:56:07] Running /usr/bin/apptainer --version
[2026-01-12 03:56:07] apptainer version 1.4.5-2.el9
[2026-01-12 03:56:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 03:56:07] c7-16-9.aglt2.org
[2026-01-12 03:56:07] apptainer works
[2026-01-12 03:56:07] Set ATHENA_PROC_NUMBER=11
[2026-01-12 03:56:07] Set ATHENA_CORE_NUMBER=11
[2026-01-12 03:56:07] Starting ATLAS job with PandaID=6966860634
[2026-01-12 03:56:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:50:09 (733061): wrapper (7.7.26015): starting
04:50:09 (733061): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 04:50:09] Arguments: --nthreads 8
[2026-01-12 04:50:09] Threads: 8
[2026-01-12 04:50:09] This job has been restarted, cleaning up previous attempt
[2026-01-12 04:50:09] Checking for CVMFS
[2026-01-12 04:50:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 04:50:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 04:50:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 04:50:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 04:50:10] 2.13.3.0 12846 97525 168712 155047 0 366 26744911 32935937 17249 16776704 0 427215518 99.469 611771074 38395 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-12 04:50:10] CVMFS is ok
[2026-01-12 04:50:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 04:50:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 04:50:10] Further information can be found at the LHC@home message board.
[2026-01-12 04:50:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 04:50:10] Checking for apptainer binary...
[2026-01-12 04:50:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 04:50:10] Running /usr/bin/apptainer --version
[2026-01-12 04:50:10] apptainer version 1.4.5-2.el9
[2026-01-12 04:50:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 04:50:10] c7-16-9.aglt2.org
[2026-01-12 04:50:10] apptainer works
[2026-01-12 04:50:10] Set ATHENA_PROC_NUMBER=8
[2026-01-12 04:50:10] Set ATHENA_CORE_NUMBER=8
[2026-01-12 04:50:10] Starting ATLAS job with PandaID=6966860634
[2026-01-12 04:50:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 01:07:56]  *** The last 200 lines of the pilot log: ***
[2026-01-13 01:07:56] 2026-01-13 06:07:18,253 | INFO     | fitting pss+swap vs Time
[2026-01-13 01:07:56] 2026-01-13 06:07:18,259 | INFO     | sum of square deviations: 530473406202.8827
[2026-01-13 01:07:56] 2026-01-13 06:07:18,619 | INFO     | time since job start (73008s) is within the limit (349056.0s)
[2026-01-13 01:07:56] 2026-01-13 06:07:18,633 | INFO     | sum of deviations: 3525608177483.9097
[2026-01-13 01:07:56] 2026-01-13 06:07:18,633 | INFO     | mean x: 1768247933.3311036
[2026-01-13 01:07:56] 2026-01-13 06:07:18,633 | INFO     | mean y: 3437286.093645485
[2026-01-13 01:07:56] 2026-01-13 06:07:18,633 | INFO     | intersect: -11748611545.524645
[2026-01-13 01:07:56] 2026-01-13 06:07:18,634 | INFO     | chi2: 9.653486055247395
[2026-01-13 01:07:56] 2026-01-13 06:07:18,635 | INFO     | sum of square deviations: 523848628981.05475
[2026-01-13 01:07:56] 2026-01-13 06:07:18,934 | INFO     | sum of deviations: 4020322058290.5845
[2026-01-13 01:07:56] 2026-01-13 06:07:18,934 | INFO     | mean x: 1768247780.838791
[2026-01-13 01:07:56] 2026-01-13 06:07:18,934 | INFO     | mean y: 3448672.320738875
[2026-01-13 01:07:56] 2026-01-13 06:07:18,934 | INFO     | intersect: -13567123368.036102
[2026-01-13 01:07:56] 2026-01-13 06:07:19,002 | INFO     | chi2: 6.299403366398412
[2026-01-13 01:07:56] 2026-01-13 06:07:19,003 | INFO     | current chi2=6.299403366398412 (change=34.744782036804075 %)
[2026-01-13 01:07:56] 2026-01-13 06:07:19,004 | INFO     | sum of square deviations: 517279248146.57056
[2026-01-13 01:07:56] 2026-01-13 06:07:19,129 | INFO     | sum of deviations: 4423324744061.949
[2026-01-13 01:07:56] 2026-01-13 06:07:19,129 | INFO     | mean x: 1768247628.346543
[2026-01-13 01:07:56] 2026-01-13 06:07:19,129 | INFO     | mean y: 3458017.365092749
[2026-01-13 01:07:56] 2026-01-13 06:07:19,129 | INFO     | intersect: -15117066372.73744
[2026-01-13 01:07:56] 2026-01-13 06:07:19,130 | INFO     | chi2: 3.617211521285654
[2026-01-13 01:07:56] 2026-01-13 06:07:19,130 | INFO     | current chi2=3.617211521285654 (change=42.5785060759851 %)
[2026-01-13 01:07:56] 2026-01-13 06:07:19,131 | INFO     | sum of square deviations: 510764886328.3639
[2026-01-13 01:07:56] 2026-01-13 06:07:19,186 | INFO     | sum of deviations: 4380020109007.391
[2026-01-13 01:07:56] 2026-01-13 06:07:19,186 | INFO     | mean x: 1768247475.8526673
[2026-01-13 01:07:56] 2026-01-13 06:07:19,187 | INFO     | mean y: 3457001.5596951735
[2026-01-13 01:07:56] 2026-01-13 06:07:19,187 | INFO     | intersect: -15159996300.038475
[2026-01-13 01:07:56] 2026-01-13 06:07:19,188 | INFO     | chi2: 3.5860576976092884
[2026-01-13 01:07:56] 2026-01-13 06:07:19,188 | INFO     | current chi2=3.5860576976092884 (change=0.861266295682168 %)
[2026-01-13 01:07:56] 2026-01-13 06:07:19,188 | INFO     | right removable region: 1180
[2026-01-13 01:07:56] 2026-01-13 06:07:19,193 | INFO     | sum of square deviations: 523847293081.05566
[2026-01-13 01:07:56] 2026-01-13 06:07:19,244 | INFO     | sum of deviations: 3051233652643.542
[2026-01-13 01:07:56] 2026-01-13 06:07:19,244 | INFO     | mean x: 1768248085.838791
[2026-01-13 01:07:56] 2026-01-13 06:07:19,244 | INFO     | mean y: 3448199.0705289673
[2026-01-13 01:07:56] 2026-01-13 06:07:19,244 | INFO     | intersect: -10296000012.259672
[2026-01-13 01:07:56] 2026-01-13 06:07:19,249 | INFO     | chi2: 6.806193502210341
[2026-01-13 01:07:56] 2026-01-13 06:07:19,250 | INFO     | current chi2=6.806193502210341 (change=29.494967276503566 %)
[2026-01-13 01:07:56] 2026-01-13 06:07:19,251 | INFO     | sum of square deviations: 517276939125.0193
[2026-01-13 01:07:56] 2026-01-13 06:07:19,265 | INFO     | monitor loop #4623: job 0:6966860634 is in state 'finished'
[2026-01-13 01:07:56] 2026-01-13 06:07:19,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 01:07:56] 2026-01-13 06:07:19,306 | INFO     | sum of deviations: 2887612264288.389
[2026-01-13 01:07:56] 2026-01-13 06:07:19,307 | INFO     | mean x: 1768248238.342327
[2026-01-13 01:07:56] 2026-01-13 06:07:19,307 | INFO     | mean y: 3451993.4325463744
[2026-01-13 01:07:56] 2026-01-13 06:07:19,307 | INFO     | intersect: -9867498967.537285
[2026-01-13 01:07:56] 2026-01-13 06:07:19,308 | INFO     | chi2: 6.495895772043563
[2026-01-13 01:07:56] 2026-01-13 06:07:19,308 | INFO     | current chi2=6.495895772043563 (change=4.559049490232792 %)
[2026-01-13 01:07:56] 2026-01-13 06:07:19,308 | INFO     | left removable region: 20
[2026-01-13 01:07:56] 2026-01-13 06:07:19,313 | INFO     | sum of square deviations: 483998119602.60376
[2026-01-13 01:07:56] 2026-01-13 06:07:19,375 | INFO     | sum of deviations: 3531892317209.326
[2026-01-13 01:07:56] 2026-01-13 06:07:19,375 | INFO     | mean x: 1768248055.3706896
[2026-01-13 01:07:56] 2026-01-13 06:07:19,375 | INFO     | mean y: 3476523.2155172415
[2026-01-13 01:07:56] 2026-01-13 06:07:19,375 | INFO     | intersect: -12900006917.612446
[2026-01-13 01:07:56] 2026-01-13 06:07:19,376 | INFO     | chi2: 0.29706766518661276
[2026-01-13 01:07:56] 2026-01-13 06:07:19,376 | INFO     | current memory leak: 7.30 B/s (using 1160 data points, chi2=0.30)
[2026-01-13 01:07:56] 2026-01-13 06:07:19,386 | INFO     | could have reported an average CPU frequency of 3193 MHz (43 samples)
[2026-01-13 01:07:56] 2026-01-13 06:07:19,387 | INFO     | ..............................
[2026-01-13 01:07:56] 2026-01-13 06:07:19,387 | INFO     | . Timing measurements:
[2026-01-13 01:07:56] 2026-01-13 06:07:19,387 | INFO     | . get job = 0 s
[2026-01-13 01:07:56] 2026-01-13 06:07:19,387 | INFO     | . initial setup = 1 s
[2026-01-13 01:07:56] 2026-01-13 06:07:19,387 | INFO     | . payload setup = 19 s
[2026-01-13 01:07:56] 2026-01-13 06:07:19,387 | INFO     | . stage-in = 0 s
[2026-01-13 01:07:56] 2026-01-13 06:07:19,387 | INFO     | . payload execution = 72930 s
[2026-01-13 01:07:56] 2026-01-13 06:07:19,387 | INFO     | . stage-out = 17 s
[2026-01-13 01:07:56] 2026-01-13 06:07:19,387 | INFO     | . log creation = 3 s
[2026-01-13 01:07:56] 2026-01-13 06:07:19,387 | INFO     | ..............................
[2026-01-13 01:07:56] 2026-01-13 06:07:19,628 | INFO     | 
[2026-01-13 01:07:56] 2026-01-13 06:07:19,628 | INFO     | job summary report
[2026-01-13 01:07:56] 2026-01-13 06:07:19,628 | INFO     | --------------------------------------------------
[2026-01-13 01:07:56] 2026-01-13 06:07:19,628 | INFO     | PanDA job id: 6966860634
[2026-01-13 01:07:56] 2026-01-13 06:07:19,628 | INFO     | task id: 48187943
[2026-01-13 01:07:56] 2026-01-13 06:07:19,628 | INFO     | errors: (none)
[2026-01-13 01:07:56] 2026-01-13 06:07:19,628 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 01:07:56] 2026-01-13 06:07:19,628 | INFO     | pilot state: finished 
[2026-01-13 01:07:56] 2026-01-13 06:07:19,628 | INFO     | transexitcode: 0
[2026-01-13 01:07:56] 2026-01-13 06:07:19,628 | INFO     | exeerrorcode: 0
[2026-01-13 01:07:56] 2026-01-13 06:07:19,628 | INFO     | exeerrordiag: 
[2026-01-13 01:07:56] 2026-01-13 06:07:19,628 | INFO     | exitcode: 0
[2026-01-13 01:07:56] 2026-01-13 06:07:19,629 | INFO     | exitmsg: OK
[2026-01-13 01:07:56] 2026-01-13 06:07:19,629 | INFO     | cpuconsumptiontime: 236703 s
[2026-01-13 01:07:56] 2026-01-13 06:07:19,629 | INFO     | nevents: 2050
[2026-01-13 01:07:56] 2026-01-13 06:07:19,629 | INFO     | neventsw: 0
[2026-01-13 01:07:56] 2026-01-13 06:07:19,629 | INFO     | pid: 788870
[2026-01-13 01:07:56] 2026-01-13 06:07:19,629 | INFO     | pgrp: 788870
[2026-01-13 01:07:56] 2026-01-13 06:07:19,629 | INFO     | corecount: 8
[2026-01-13 01:07:56] 2026-01-13 06:07:19,629 | INFO     | event service: False
[2026-01-13 01:07:56] 2026-01-13 06:07:19,629 | INFO     | sizes: {0: 2286812, 1: 2287011, 8: 2287305, 12: 2287333, 72951: 2366643, 72952: 2366642, 72971: 2374712, 72973: 2374768, 72987: 2375014}
[2026-01-13 01:07:56] 2026-01-13 06:07:19,629 | INFO     | --------------------------------------------------
[2026-01-13 01:07:56] 2026-01-13 06:07:19,629 | INFO     | 
[2026-01-13 01:07:56] 2026-01-13 06:07:19,629 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-13 01:07:56] 2026-01-13 06:07:19,736 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,736 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,736 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,737 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,737 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,737 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,737 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,737 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,737 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,737 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,737 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,737 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,737 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,737 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,737 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,738 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,738 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,738 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 01:07:56] 2026-01-13 06:07:19,738 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,738 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 01:07:56] 2026-01-13 06:07:19,738 | INFO     | job 6966860634 has completed (purged errors)
[2026-01-13 01:07:56] 2026-01-13 06:07:19,738 | INFO     | overall cleanup function is called
[2026-01-13 01:07:56] 2026-01-13 06:07:20,809 | INFO     | --- collectZombieJob: --- 10, [788870]
[2026-01-13 01:07:56] 2026-01-13 06:07:20,809 | INFO     | zombie collector waiting for pid 788870
[2026-01-13 01:07:56] 2026-01-13 06:07:20,809 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 01:07:56] 2026-01-13 06:07:20,809 | INFO     | collected zombie processes
[2026-01-13 01:07:56] 2026-01-13 06:07:20,809 | INFO     | will attempt to kill all subprocesses of pid=788870
[2026-01-13 01:07:56] 2026-01-13 06:07:27,131 | INFO     | process IDs to be killed: [788870] (in reverse order)
[2026-01-13 01:07:56] 2026-01-13 06:07:27,586 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 01:07:56] 2026-01-13 06:07:27,587 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 01:07:56] 2026-01-13 06:07:27,616 | INFO     | did not find any defunct processes belonging to 788870
[2026-01-13 01:07:56] 2026-01-13 06:07:27,637 | INFO     | did not find any defunct processes belonging to 788870
[2026-01-13 01:07:56] 2026-01-13 06:07:27,637 | INFO     | ready for new job
[2026-01-13 01:07:56] 2026-01-13 06:07:27,637 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 01:07:56] 2026-01-13 06:07:27,646 | INFO     | ***************************************
[2026-01-13 01:07:56] 2026-01-13 06:07:27,646 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 01:07:56] 2026-01-13 06:07:27,646 | INFO     | ***************************************
[2026-01-13 01:07:56] 2026-01-13 06:07:27,646 | INFO     | 
[2026-01-13 01:07:56] 2026-01-13 06:07:27,664 | INFO     | architecture information:
[2026-01-13 01:07:56] 2026-01-13 06:07:27,672 | INFO     | executing command: cat /etc/os-release
[2026-01-13 01:07:56] 2026-01-13 06:07:27,734 | INFO     | cat /etc/os-release:
[2026-01-13 01:07:56] NAME="CentOS Linux"
[2026-01-13 01:07:56] VERSION="7 (Core)"
[2026-01-13 01:07:56] ID="centos"
[2026-01-13 01:07:56] ID_LIKE="rhel fedora"
[2026-01-13 01:07:56] VERSION_ID="7"
[2026-01-13 01:07:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 01:07:56] ANSI_COLOR="0;31"
[2026-01-13 01:07:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 01:07:56] HOME_URL="https://www.centos.org/"
[2026-01-13 01:07:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 01:07:56] 
[2026-01-13 01:07:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 01:07:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 01:07:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 01:07:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 01:07:56] 
[2026-01-13 01:07:56] 2026-01-13 06:07:27,735 | INFO     | ***************************************
[2026-01-13 01:07:56] 2026-01-13 06:07:28,238 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-13 01:07:56] 2026-01-13 06:07:28,325 | INFO     | sufficient remaining disk space (65366130688 B)
[2026-01-13 01:07:56] 2026-01-13 06:07:28,325 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 01:07:56] 2026-01-13 06:07:28,325 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 01:07:56] 2026-01-13 06:07:28,325 | INFO     | update_server=False
[2026-01-13 01:07:56] 2026-01-13 06:07:28,325 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 01:07:56] 2026-01-13 06:07:28,331 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 01:07:56] 2026-01-13 06:07:28,331 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 01:07:56] 2026-01-13 06:07:28,331 | INFO     | aborting loop
[2026-01-13 01:07:56] 2026-01-13 06:07:28,916 | INFO     | all job control threads have been joined
[2026-01-13 01:07:56] 2026-01-13 06:07:28,928 | INFO     | all data control threads have been joined
[2026-01-13 01:07:56] 2026-01-13 06:07:29,142 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 01:07:56] 2026-01-13 06:07:29,336 | INFO     | [job] retrieve thread has finished
[2026-01-13 01:07:56] 2026-01-13 06:07:29,347 | INFO     | [job] job monitor thread has finished
[2026-01-13 01:07:56] 2026-01-13 06:07:29,400 | INFO     | [payload] failed_post thread has finished
[2026-01-13 01:07:56] 2026-01-13 06:07:29,830 | INFO     | all payload control threads have been joined
[2026-01-13 01:07:56] 2026-01-13 06:07:29,898 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 01:07:56] 2026-01-13 06:07:29,935 | INFO     | [job] control thread has finished
[2026-01-13 01:07:56] 2026-01-13 06:07:29,950 | INFO     | [data] control thread has finished
[2026-01-13 01:07:56] 2026-01-13 06:07:30,153 | INFO     | [job] queue monitor thread has finished
[2026-01-13 01:07:56] 2026-01-13 06:07:30,355 | INFO     | [data] copytool_out thread has finished
[2026-01-13 01:07:56] 2026-01-13 06:07:30,553 | INFO     | [data] copytool_in thread has finished
[2026-01-13 01:07:56] 2026-01-13 06:07:30,613 | INFO     | [payload] validate_post thread has finished
[2026-01-13 01:07:56] 2026-01-13 06:07:30,669 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 01:07:56] 2026-01-13 06:07:30,669 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 01:07:56] 2026-01-13 06:07:30,669 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 01:07:56] 2026-01-13 06:07:30,670 | INFO     | [job] validate thread has finished
[2026-01-13 01:07:56] 2026-01-13 06:07:30,858 | INFO     | [payload] control thread has finished
[2026-01-13 01:07:56] 2026-01-13 06:07:30,926 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 01:07:56] 2026-01-13 06:07:34,966 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 01:07:56] 2026-01-13 06:07:35,909 | INFO     | [monitor] cgroup control has ended
[2026-01-13 01:07:56] 2026-01-13 06:07:36,457 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139629014042432)>', '<ExcThread(monitor, started 139628665345792)>']
[2026-01-13 01:07:56] 2026-01-13 06:07:41,521 | INFO     | all workflow threads have been joined
[2026-01-13 01:07:56] 2026-01-13 06:07:41,523 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 01:07:56] 2026-01-13 06:07:41,523 | INFO     | traces error code: 0
[2026-01-13 01:07:56] 2026-01-13 06:07:41,523 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 01:07:56] 2026-01-13 06:07:55,052 | INFO     | PID=752133 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-13 01:07:56] 2026-01-13 06:07:55,052 | INFO     | .. there are 25 such processes running
[2026-01-13 01:07:56] 2026-01-13 06:07:55,053 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 01:07:56] 2026-01-13 06:07:55,053 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 01:07:56] 2026-01-13 06:07:55,053 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 01:07:56] 2026-01-13 06:07:55,053 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 01:07:56] 2026-01-13 06:07:55,053 | INFO     | [monitor] control thread has ended
[2026-01-13 01:07:56] 2026-01-13 06:07:55,416 [wrapper] ==== pilot stdout END ====
[2026-01-13 01:07:56] 2026-01-13 06:07:55,438 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 01:07:56] 2026-01-13 06:07:55,457 [wrapper] pilotpid: 752133
[2026-01-13 01:07:56] 2026-01-13 06:07:55,468 [wrapper] Pilot exit status: 0
[2026-01-13 01:07:56] 2026-01-13 06:07:55,537 [wrapper] pandaids: 6966860634 6966860634
[2026-01-13 01:07:56] 2026-01-13 06:07:55,659 [wrapper] cleanup supervisor_pilot  300292 752134
[2026-01-13 01:07:56] 2026-01-13 06:07:55,662 [wrapper] Test setup, not cleaning
[2026-01-13 01:07:56] 2026-01-13 06:07:55,665 [wrapper] apfmon messages muted
[2026-01-13 01:07:56] 2026-01-13 06:07:55,671 [wrapper] ==== wrapper stdout END ====
[2026-01-13 01:07:56] 2026-01-13 06:07:55,674 [wrapper] ==== wrapper stderr END ====
[2026-01-13 01:07:56]  *** Error codes and diagnostics ***
[2026-01-13 01:07:56]     "exeErrorCode": 0,
[2026-01-13 01:07:56]     "exeErrorDiag": "",
[2026-01-13 01:07:56]     "pilotErrorCode": 0,
[2026-01-13 01:07:56]     "pilotErrorDiag": "",
[2026-01-13 01:07:56]  *** Listing of results directory ***
[2026-01-13 01:07:56] total 2434852
[2026-01-13 01:07:56] drwx------. 5 boincer umatlas       4096 Dec  3 09:30 pilot3
[2026-01-13 01:07:56] -rw-r--r--. 1 boincer umatlas     579449 Jan 12 03:50 pilot3.tar.gz
[2026-01-13 01:07:56] -rw-r--r--. 1 boincer umatlas       5112 Jan 12 03:51 queuedata.json
[2026-01-13 01:07:56] -rwx------. 1 boincer umatlas      36322 Jan 12 03:52 runpilot2-wrapper.sh
[2026-01-13 01:07:56] -rw-r--r--. 1 boincer umatlas        100 Jan 12 03:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 01:07:56] -rwxr-xr-x. 1 boincer umatlas       7986 Jan 12 03:56 run_atlas
[2026-01-13 01:07:56] -rw-r--r--. 1 boincer umatlas        105 Jan 12 03:56 job.xml
[2026-01-13 01:07:56] -rw-r--r--. 3 boincer umatlas  320369569 Jan 12 03:56 EVNT.48118027._000189.pool.root.1
[2026-01-13 01:07:56] -rw-r--r--. 3 boincer umatlas  320369569 Jan 12 03:56 ATLAS.root_0
[2026-01-13 01:07:56] -rw-r--r--. 3 boincer umatlas  319496118 Jan 12 03:56 EVNT.48118027._000190.pool.root.1
[2026-01-13 01:07:56] -rw-r--r--. 3 boincer umatlas  319496118 Jan 12 03:56 ATLAS.root_1
[2026-01-13 01:07:56] -rw-r--r--. 2 boincer umatlas      15897 Jan 12 03:56 start_atlas.sh
[2026-01-13 01:07:56] drwxrwx--x. 2 boincer umatlas       4096 Jan 12 03:56 shared
[2026-01-13 01:07:56] -rw-r--r--. 2 boincer umatlas     592701 Jan 12 03:56 input.tar.gz
[2026-01-13 01:07:56] -rw-r--r--. 1 boincer umatlas          0 Jan 12 03:56 boinc_lockfile
[2026-01-13 01:07:56] -rw-r--r--. 1 boincer umatlas       3435 Jan 12 04:50 pandaJob.out
[2026-01-13 01:07:56] -rw-------. 1 boincer umatlas         57 Jan 12 04:50 setup.sh.local
[2026-01-13 01:07:56] -rw-------. 1 boincer umatlas     987688 Jan 12 04:50 agis_schedconf.cvmfs.json
[2026-01-13 01:07:56] -rw-r--r--. 1 boincer umatlas        533 Jan 13 00:55 boinc_task_state.xml
[2026-01-13 01:07:56] -rw-r--r--. 1 boincer umatlas       6945 Jan 13 01:03 init_data.xml
[2026-01-13 01:07:56] -rw-------. 1 boincer umatlas 1185277845 Jan 13 01:05 HITS.48187943._000922.pool.root.1
[2026-01-13 01:07:56] -rw-------. 1 boincer umatlas       1070 Jan 13 01:06 memory_monitor_summary.json
[2026-01-13 01:07:56] -rw-------. 1 boincer umatlas    1516240 Jan 13 01:06 agis_ddmendpoints.agis.ALL.json
[2026-01-13 01:07:56] -rw-------. 1 boincer umatlas    2657814 Jan 13 01:07 log.48187943._000922.job.log.tgz.1
[2026-01-13 01:07:56] -rw-------. 1 boincer umatlas      28046 Jan 13 01:07 heartbeat.json
[2026-01-13 01:07:56] -rw-r--r--. 1 boincer umatlas       8192 Jan 13 01:07 boinc_mmap_file
[2026-01-13 01:07:56] -rw-r--r--. 1 boincer umatlas         29 Jan 13 01:07 wrapper_checkpoint.txt
[2026-01-13 01:07:56] -rw-------. 1 boincer umatlas         96 Jan 13 01:07 pilot_heartbeat.json
[2026-01-13 01:07:56] -rw-------. 1 boincer umatlas        822 Jan 13 01:07 pilotlog.txt
[2026-01-13 01:07:56] -rw-------. 1 boincer umatlas    9500323 Jan 13 01:07 log.48187943._000922.job.log.1
[2026-01-13 01:07:56] -rw-------. 1 boincer umatlas        353 Jan 13 01:07 output.list
[2026-01-13 01:07:56] -rw-r--r--. 1 boincer umatlas        620 Jan 13 01:07 runtime_log
[2026-01-13 01:07:56] -rw-------. 1 boincer umatlas   12195840 Jan 13 01:07 result.tar.gz
[2026-01-13 01:07:56] -rw-------. 1 boincer umatlas        791 Jan 13 01:07 WYTLDm4pSz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1FnKDmwR6FTn.diag
[2026-01-13 01:07:56] -rw-r--r--. 1 boincer umatlas       9560 Jan 13 01:07 runtime_log.err
[2026-01-13 01:07:56] -rw-r--r--. 1 boincer umatlas      23255 Jan 13 01:07 stderr.txt
[2026-01-13 01:07:56] HITS file was successfully produced:
[2026-01-13 01:07:56] -rw-------. 1 boincer umatlas 1185277845 Jan 13 01:05 shared/HITS.pool.root.1
[2026-01-13 01:07:56]  *** Contents of shared directory: ***
[2026-01-13 01:07:56] total 1794888
[2026-01-13 01:07:56] -rw-r--r--. 3 boincer umatlas  320369569 Jan 12 03:56 ATLAS.root_0
[2026-01-13 01:07:56] -rw-r--r--. 3 boincer umatlas  319496118 Jan 12 03:56 ATLAS.root_1
[2026-01-13 01:07:56] -rw-r--r--. 2 boincer umatlas      15897 Jan 12 03:56 start_atlas.sh
[2026-01-13 01:07:56] -rw-r--r--. 2 boincer umatlas     592701 Jan 12 03:56 input.tar.gz
[2026-01-13 01:07:56] -rw-------. 1 boincer umatlas 1185277845 Jan 13 01:05 HITS.pool.root.1
[2026-01-13 01:07:56] -rw-------. 1 boincer umatlas   12195840 Jan 13 01:07 result.tar.gz
01:07:57 (733061): run_atlas exited; CPU time 236843.945466
01:07:57 (733061): called boinc_finish(0)

</stderr_txt>
]]>

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