Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:59:55 (1844970): wrapper (7.7.26015): starting
09:59:55 (1844970): wrapper: running run_atlas (--nthreads 4)
[2026-01-12 09:59:55] Arguments: --nthreads 4
[2026-01-12 09:59:55] Threads: 4
[2026-01-12 09:59:55] Checking for CVMFS
[2026-01-12 09:59:55] No cvmfs_config command found, will try listing directly
[2026-01-12 09:59:55] CVMFS is ok
[2026-01-12 09:59:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 09:59:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 09:59:55] Further information can be found at the LHC@home message board.
[2026-01-12 09:59:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 09:59:55] Checking for apptainer binary...
[2026-01-12 09:59:55] which: no apptainer in ((null))
[2026-01-12 09:59:55] apptainer is not installed, using version from CVMFS
[2026-01-12 09:59:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 09:59:55] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot100/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2026-01-12 09:59:55] apptainer works
[2026-01-12 09:59:55] Set ATHENA_PROC_NUMBER=4
[2026-01-12 09:59:55] Set ATHENA_CORE_NUMBER=4
[2026-01-12 09:59:55] Starting ATLAS job with PandaID=6966858152
[2026-01-12 09:59:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot100/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 02:08:58]  *** The last 200 lines of the pilot log: ***
[2026-01-13 02:08:58] 2026-01-13 01:08:05,481 | INFO     | .. there are 6 such processes running
[2026-01-13 02:08:58] 2026-01-13 01:08:05,809 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-13 02:08:58] 2026-01-13 01:08:05,826 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2736.1605703125
[2026-01-13 02:08:58] 2026-01-13 01:08:05,847 | INFO     | using path: /scratch/boinc/var/slot100/slots/0/PanDA_Pilot-6966858152/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 02:08:58] 2026-01-13 01:08:05,848 | INFO     | extracted standard info from prmon json
[2026-01-13 02:08:58] 2026-01-13 01:08:05,848 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 02:08:58] 2026-01-13 01:08:05,848 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 02:08:58] 2026-01-13 01:08:05,861 | INFO     | fitting pss+swap vs Time
[2026-01-13 02:08:58] 2026-01-13 01:08:05,862 | INFO     | sum of square deviations: 267540041398.0
[2026-01-13 02:08:58] 2026-01-13 01:08:05,882 | INFO     | sum of deviations: 917936320918.5001
[2026-01-13 02:08:58] 2026-01-13 01:08:05,882 | INFO     | mean x: 1768237453.5
[2026-01-13 02:08:58] 2026-01-13 01:08:05,882 | INFO     | mean y: 2739591.4275210085
[2026-01-13 02:08:58] 2026-01-13 01:08:05,882 | INFO     | intersect: -6064125667.67392
[2026-01-13 02:08:58] 2026-01-13 01:08:05,883 | INFO     | chi2: 4.63687576830467
[2026-01-13 02:08:58] 2026-01-13 01:08:05,884 | INFO     | sum of square deviations: 263346697658.0
[2026-01-13 02:08:58] 2026-01-13 01:08:05,903 | INFO     | sum of deviations: 1185783069005.0007
[2026-01-13 02:08:58] 2026-01-13 01:08:05,904 | INFO     | mean x: 1768237301.0
[2026-01-13 02:08:58] 2026-01-13 01:08:05,904 | INFO     | mean y: 2749325.227032735
[2026-01-13 02:08:58] 2026-01-13 01:08:05,904 | INFO     | intersect: -7959172628.439827
[2026-01-13 02:08:58] 2026-01-13 01:08:05,905 | INFO     | chi2: 1.983728836225472
[2026-01-13 02:08:58] 2026-01-13 01:08:05,905 | INFO     | current chi2=1.983728836225472 (change=57.2184174140434 %)
[2026-01-13 02:08:58] 2026-01-13 01:08:05,906 | INFO     | sum of square deviations: 259197401255.5
[2026-01-13 02:08:58] 2026-01-13 01:08:05,925 | INFO     | sum of deviations: 1182966052496.5
[2026-01-13 02:08:58] 2026-01-13 01:08:05,925 | INFO     | mean x: 1768237148.5
[2026-01-13 02:08:58] 2026-01-13 01:08:05,925 | INFO     | mean y: 2749219.5360934185
[2026-01-13 02:08:58] 2026-01-13 01:08:05,925 | INFO     | intersect: -8067410856.55505
[2026-01-13 02:08:58] 2026-01-13 01:08:05,926 | INFO     | chi2: 1.955343741122367
[2026-01-13 02:08:58] 2026-01-13 01:08:05,926 | INFO     | current chi2=1.955343741122367 (change=1.430895926134461 %)
[2026-01-13 02:08:58] 2026-01-13 01:08:05,926 | INFO     | right removable region: 941
[2026-01-13 02:08:58] 2026-01-13 01:08:05,927 | INFO     | sum of square deviations: 263346697658.0
[2026-01-13 02:08:58] 2026-01-13 01:08:05,947 | INFO     | sum of deviations: 703333903085.0001
[2026-01-13 02:08:58] 2026-01-13 01:08:05,947 | INFO     | mean x: 1768237606.0
[2026-01-13 02:08:58] 2026-01-13 01:08:05,947 | INFO     | mean y: 2747382.5733896517
[2026-01-13 02:08:58] 2026-01-13 01:08:05,947 | INFO     | intersect: -4719777973.050246
[2026-01-13 02:08:58] 2026-01-13 01:08:05,948 | INFO     | chi2: 2.7439457649698755
[2026-01-13 02:08:58] 2026-01-13 01:08:05,948 | INFO     | current chi2=2.7439457649698755 (change=40.82339268767785 %)
[2026-01-13 02:08:58] 2026-01-13 01:08:05,949 | INFO     | sum of square deviations: 259197401255.5
[2026-01-13 02:08:58] 2026-01-13 01:08:05,968 | INFO     | sum of deviations: 688520079833.5
[2026-01-13 02:08:58] 2026-01-13 01:08:05,968 | INFO     | mean x: 1768237758.5
[2026-01-13 02:08:58] 2026-01-13 01:08:05,969 | INFO     | mean y: 2747926.7165605095
[2026-01-13 02:08:58] 2026-01-13 01:08:05,969 | INFO     | intersect: -4694317694.890227
[2026-01-13 02:08:58] 2026-01-13 01:08:05,969 | INFO     | chi2: 2.7436360911000603
[2026-01-13 02:08:58] 2026-01-13 01:08:05,970 | INFO     | current chi2=2.7436360911000603 (change=0.011285713944079153 %)
[2026-01-13 02:08:58] 2026-01-13 01:08:05,970 | INFO     | left removable region: 20
[2026-01-13 02:08:58] 2026-01-13 01:08:05,971 | INFO     | sum of square deviations: 242246104820.0
[2026-01-13 02:08:58] 2026-01-13 01:08:05,989 | INFO     | sum of deviations: 911798854077.9998
[2026-01-13 02:08:58] 2026-01-13 01:08:05,990 | INFO     | mean x: 1768237728.0
[2026-01-13 02:08:58] 2026-01-13 01:08:05,990 | INFO     | mean y: 2759104.2258414766
[2026-01-13 02:08:58] 2026-01-13 01:08:05,990 | INFO     | intersect: -6652774677.528386
[2026-01-13 02:08:58] 2026-01-13 01:08:05,991 | INFO     | chi2: 0.04095022991556485
[2026-01-13 02:08:58] 2026-01-13 01:08:05,991 | INFO     | current memory leak: 3.76 B/s (using 921 data points, chi2=0.04)
[2026-01-13 02:08:58] 2026-01-13 01:08:05,992 | INFO     | could have reported an average CPU frequency of 2719 MHz (36 samples)
[2026-01-13 02:08:58] 2026-01-13 01:08:05,992 | INFO     | ..............................
[2026-01-13 02:08:58] 2026-01-13 01:08:05,992 | INFO     | . Timing measurements:
[2026-01-13 02:08:58] 2026-01-13 01:08:05,992 | INFO     | . get job = 0 s
[2026-01-13 02:08:58] 2026-01-13 01:08:05,992 | INFO     | . initial setup = 1 s
[2026-01-13 02:08:58] 2026-01-13 01:08:05,992 | INFO     | . payload setup = 14 s
[2026-01-13 02:08:58] 2026-01-13 01:08:05,992 | INFO     | . stage-in = 0 s
[2026-01-13 02:08:58] 2026-01-13 01:08:05,992 | INFO     | . payload execution = 58030 s
[2026-01-13 02:08:58] 2026-01-13 01:08:05,993 | INFO     | . stage-out = 2 s
[2026-01-13 02:08:58] 2026-01-13 01:08:05,993 | INFO     | . log creation = 1 s
[2026-01-13 02:08:58] 2026-01-13 01:08:05,993 | INFO     | ..............................
[2026-01-13 02:08:58] 2026-01-13 01:08:06,072 | INFO     | 
[2026-01-13 02:08:58] 2026-01-13 01:08:06,072 | INFO     | job summary report
[2026-01-13 02:08:58] 2026-01-13 01:08:06,072 | INFO     | --------------------------------------------------
[2026-01-13 02:08:58] 2026-01-13 01:08:06,073 | INFO     | PanDA job id: 6966858152
[2026-01-13 02:08:58] 2026-01-13 01:08:06,073 | INFO     | task id: 48187943
[2026-01-13 02:08:58] 2026-01-13 01:08:06,073 | INFO     | errors: (none)
[2026-01-13 02:08:58] 2026-01-13 01:08:06,073 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 02:08:58] 2026-01-13 01:08:06,073 | INFO     | pilot state: finished 
[2026-01-13 02:08:58] 2026-01-13 01:08:06,073 | INFO     | transexitcode: 0
[2026-01-13 02:08:58] 2026-01-13 01:08:06,073 | INFO     | exeerrorcode: 0
[2026-01-13 02:08:58] 2026-01-13 01:08:06,073 | INFO     | exeerrordiag: 
[2026-01-13 02:08:58] 2026-01-13 01:08:06,073 | INFO     | exitcode: 0
[2026-01-13 02:08:58] 2026-01-13 01:08:06,073 | INFO     | exitmsg: OK
[2026-01-13 02:08:58] 2026-01-13 01:08:06,073 | INFO     | cpuconsumptiontime: 230340 s
[2026-01-13 02:08:58] 2026-01-13 01:08:06,074 | INFO     | nevents: 2050
[2026-01-13 02:08:58] 2026-01-13 01:08:06,074 | INFO     | neventsw: 0
[2026-01-13 02:08:58] 2026-01-13 01:08:06,074 | INFO     | pid: 1874050
[2026-01-13 02:08:58] 2026-01-13 01:08:06,074 | INFO     | pgrp: 1874050
[2026-01-13 02:08:58] 2026-01-13 01:08:06,074 | INFO     | corecount: 4
[2026-01-13 02:08:58] 2026-01-13 01:08:06,074 | INFO     | event service: False
[2026-01-13 02:08:58] 2026-01-13 01:08:06,074 | INFO     | sizes: {0: 2284633, 6: 2284895, 11: 2284923, 58049: 2359428, 58052: 2368450, 58053: 2368506, 58059: 2368880}
[2026-01-13 02:08:58] 2026-01-13 01:08:06,074 | INFO     | --------------------------------------------------
[2026-01-13 02:08:58] 2026-01-13 01:08:06,074 | INFO     | 
[2026-01-13 02:08:58] 2026-01-13 01:08:06,074 | INFO     | executing command: ls -lF /scratch/boinc/var/slot100/slots/0
[2026-01-13 02:08:58] 2026-01-13 01:08:06,105 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,105 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,105 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,106 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,106 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,106 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,106 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,106 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,106 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,106 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,106 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,106 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,106 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,106 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,106 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,106 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,106 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,107 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 02:08:58] 2026-01-13 01:08:06,107 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,107 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 02:08:58] 2026-01-13 01:08:06,107 | INFO     | job 6966858152 has completed (purged errors)
[2026-01-13 02:08:58] 2026-01-13 01:08:06,107 | INFO     | overall cleanup function is called
[2026-01-13 02:08:58] 2026-01-13 01:08:07,124 | INFO     | --- collectZombieJob: --- 10, [1874050]
[2026-01-13 02:08:58] 2026-01-13 01:08:07,125 | INFO     | zombie collector waiting for pid 1874050
[2026-01-13 02:08:58] 2026-01-13 01:08:07,125 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 02:08:58] 2026-01-13 01:08:07,125 | INFO     | collected zombie processes
[2026-01-13 02:08:58] 2026-01-13 01:08:07,125 | INFO     | will attempt to kill all subprocesses of pid=1874050
[2026-01-13 02:08:58] 2026-01-13 01:08:07,699 | INFO     | process IDs to be killed: [1874050] (in reverse order)
[2026-01-13 02:08:58] 2026-01-13 01:08:07,907 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 02:08:58] 2026-01-13 01:08:07,908 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 02:08:58] 2026-01-13 01:08:07,936 | INFO     | did not find any defunct processes belonging to 1874050
[2026-01-13 02:08:58] 2026-01-13 01:08:07,962 | INFO     | did not find any defunct processes belonging to 1874050
[2026-01-13 02:08:58] 2026-01-13 01:08:07,963 | INFO     | ready for new job
[2026-01-13 02:08:58] 2026-01-13 01:08:07,963 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 02:08:58] 2026-01-13 01:08:07,969 | INFO     | ***************************************
[2026-01-13 02:08:58] 2026-01-13 01:08:07,969 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 02:08:58] 2026-01-13 01:08:07,969 | INFO     | ***************************************
[2026-01-13 02:08:58] 2026-01-13 01:08:07,969 | INFO     | 
[2026-01-13 02:08:58] 2026-01-13 01:08:07,977 | INFO     | architecture information:
[2026-01-13 02:08:58] 2026-01-13 01:08:07,978 | INFO     | executing command: cat /etc/os-release
[2026-01-13 02:08:58] 2026-01-13 01:08:07,998 | INFO     | cat /etc/os-release:
[2026-01-13 02:08:58] NAME="CentOS Linux"
[2026-01-13 02:08:58] VERSION="7 (Core)"
[2026-01-13 02:08:58] ID="centos"
[2026-01-13 02:08:58] ID_LIKE="rhel fedora"
[2026-01-13 02:08:58] VERSION_ID="7"
[2026-01-13 02:08:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 02:08:58] ANSI_COLOR="0;31"
[2026-01-13 02:08:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 02:08:58] HOME_URL="https://www.centos.org/"
[2026-01-13 02:08:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 02:08:58] 
[2026-01-13 02:08:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 02:08:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 02:08:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 02:08:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 02:08:58] 
[2026-01-13 02:08:58] 2026-01-13 01:08:07,998 | INFO     | ***************************************
[2026-01-13 02:08:58] 2026-01-13 01:08:08,501 | INFO     | executing command: df -mP /scratch/boinc/var/slot100/slots/0
[2026-01-13 02:08:58] 2026-01-13 01:08:08,527 | INFO     | sufficient remaining disk space (3357367336960 B)
[2026-01-13 02:08:58] 2026-01-13 01:08:08,527 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 02:08:58] 2026-01-13 01:08:08,527 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 02:08:58] 2026-01-13 01:08:08,527 | INFO     | update_server=False
[2026-01-13 02:08:58] 2026-01-13 01:08:08,527 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 02:08:58] 2026-01-13 01:08:08,548 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-13 02:08:58] 2026-01-13 01:08:08,548 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-13 02:08:58] 2026-01-13 01:08:08,548 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 02:08:58] 2026-01-13 01:08:08,549 | INFO     | will abort loop
[2026-01-13 02:08:58] 2026-01-13 01:08:08,603 | INFO     | all payload control threads have been joined
[2026-01-13 02:08:58] 2026-01-13 01:08:08,974 | INFO     | all job control threads have been joined
[2026-01-13 02:08:58] 2026-01-13 01:08:09,094 | INFO     | all data control threads have been joined
[2026-01-13 02:08:58] 2026-01-13 01:08:09,203 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 02:08:58] 2026-01-13 01:08:09,533 | INFO     | [job] retrieve thread has finished
[2026-01-13 02:08:58] 2026-01-13 01:08:09,554 | INFO     | [job] job monitor thread has finished
[2026-01-13 02:08:58] 2026-01-13 01:08:09,608 | INFO     | [payload] control thread has finished
[2026-01-13 02:08:58] 2026-01-13 01:08:09,696 | INFO     | [payload] validate_post thread has finished
[2026-01-13 02:08:58] 2026-01-13 01:08:09,812 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 02:08:58] 2026-01-13 01:08:09,905 | INFO     | [payload] failed_post thread has finished
[2026-01-13 02:08:58] 2026-01-13 01:08:09,980 | INFO     | [job] control thread has finished
[2026-01-13 02:08:58] 2026-01-13 01:08:10,100 | INFO     | [data] control thread has finished
[2026-01-13 02:08:58] 2026-01-13 01:08:10,131 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 02:08:58] 2026-01-13 01:08:10,315 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 02:08:58] 2026-01-13 01:08:10,339 | INFO     | [data] copytool_in thread has finished
[2026-01-13 02:08:58] 2026-01-13 01:08:10,751 | INFO     | [job] validate thread has finished
[2026-01-13 02:08:58] 2026-01-13 01:08:10,874 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 02:08:58] 2026-01-13 01:08:11,020 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 02:08:58] 2026-01-13 01:08:11,080 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 02:08:58] 2026-01-13 01:08:11,209 | INFO     | [data] copytool_out thread has finished
[2026-01-13 02:08:58] 2026-01-13 01:08:12,085 | INFO     | [job] queue monitor thread has finished
[2026-01-13 02:08:58] 2026-01-13 01:08:14,137 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 02:08:58] 2026-01-13 01:08:36,552 | INFO     | 58078s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-13 02:08:58] 2026-01-13 01:08:37,139 | INFO     | [monitor] cgroup control has ended
[2026-01-13 02:08:58] 2026-01-13 01:08:38,339 | INFO     | PID=1853131 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 02:08:58] 2026-01-13 01:08:38,339 | INFO     | .. there are 6 such processes running
[2026-01-13 02:08:58] 2026-01-13 01:08:38,340 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 02:08:58] 2026-01-13 01:08:38,340 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 02:08:58] 2026-01-13 01:08:38,340 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 02:08:58] 2026-01-13 01:08:38,622 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22589571938112)>', '<ExcThread(monitor, started 22589325920000)>']
[2026-01-13 02:08:58] 2026-01-13 01:08:39,345 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 02:08:58] 2026-01-13 01:08:39,346 | INFO     | [monitor] control thread has ended
[2026-01-13 02:08:58] 2026-01-13 01:08:43,649 | INFO     | all workflow threads have been joined
[2026-01-13 02:08:58] 2026-01-13 01:08:43,649 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 02:08:58] 2026-01-13 01:08:43,650 | INFO     | traces error code: 0
[2026-01-13 02:08:58] 2026-01-13 01:08:43,650 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 02:08:58] 2026-01-13 01:08:43,838 [wrapper] ==== pilot stdout END ====
[2026-01-13 02:08:58] 2026-01-13 01:08:43,842 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 02:08:58] 2026-01-13 01:08:43,846 [wrapper] pilotpid: 1853131
[2026-01-13 02:08:58] 2026-01-13 01:08:43,849 [wrapper] Pilot exit status: 0
[2026-01-13 02:08:58] 2026-01-13 01:08:43,862 [wrapper] pandaids: 6966858152
[2026-01-13 02:08:58] 2026-01-13 01:08:44,023 [wrapper] cleanup supervisor_pilot 3221072 1853132
[2026-01-13 02:08:58] 2026-01-13 01:08:44,027 [wrapper] Test setup, not cleaning
[2026-01-13 02:08:58] 2026-01-13 01:08:44,031 [wrapper] apfmon messages muted
[2026-01-13 02:08:58] 2026-01-13 01:08:44,036 [wrapper] ==== wrapper stdout END ====
[2026-01-13 02:08:58] 2026-01-13 01:08:44,039 [wrapper] ==== wrapper stderr END ====
[2026-01-13 02:08:58]  *** Error codes and diagnostics ***
[2026-01-13 02:08:58]     "exeErrorCode": 0,
[2026-01-13 02:08:58]     "exeErrorDiag": "",
[2026-01-13 02:08:58]     "pilotErrorCode": 0,
[2026-01-13 02:08:58]     "pilotErrorDiag": "",
[2026-01-13 02:08:58]  *** Listing of results directory ***
[2026-01-13 02:08:58] total 1502744
[2026-01-13 02:08:58] -rw-r--r-- 1 boinc boinc     579449 Jan 12 09:50 pilot3.tar.gz
[2026-01-13 02:08:58] -rw-r--r-- 1 boinc boinc       5112 Jan 12 09:51 queuedata.json
[2026-01-13 02:08:58] -rwx------ 1 boinc boinc      36322 Jan 12 09:52 runpilot2-wrapper.sh
[2026-01-13 02:08:58] -rw-r--r-- 1 boinc boinc        100 Jan 12 09:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 02:08:58] -rwxr-xr-x 1 boinc boinc       7986 Jan 12 09:59 run_atlas
[2026-01-13 02:08:58] -rw-r--r-- 1 boinc boinc        105 Jan 12 09:59 job.xml
[2026-01-13 02:08:58] -rw-r--r-- 2 boinc boinc  323975106 Jan 12 09:59 EVNT.48118027._000142.pool.root.1
[2026-01-13 02:08:58] -rw-r--r-- 1 boinc boinc       6692 Jan 12 09:59 init_data.xml
[2026-01-13 02:08:58] -rw-r--r-- 2 boinc boinc      15847 Jan 12 09:59 start_atlas.sh
[2026-01-13 02:08:58] drwxrwx--x 2 boinc boinc       4096 Jan 12 09:59 shared
[2026-01-13 02:08:58] -rw-r--r-- 2 boinc boinc     592616 Jan 12 09:59 input.tar.gz
[2026-01-13 02:08:58] -rw-r--r-- 1 boinc boinc          0 Jan 12 09:59 boinc_lockfile
[2026-01-13 02:08:58] -rw-r--r-- 1 boinc boinc       2896 Jan 12 09:59 pandaJob.out
[2026-01-13 02:08:58] -rw------- 1 boinc boinc     987688 Jan 12 10:00 agis_schedconf.cvmfs.json
[2026-01-13 02:08:58] drwx------ 5 boinc boinc       4096 Jan 12 10:00 pilot3
[2026-01-13 02:08:58] -rw-r--r-- 1 boinc boinc        532 Jan 13 02:02 boinc_task_state.xml
[2026-01-13 02:08:58] -rw------- 1 boinc boinc 1190849070 Jan 13 02:07 HITS.48187943._000692.pool.root.1
[2026-01-13 02:08:58] -rw------- 1 boinc boinc       1038 Jan 13 02:07 memory_monitor_summary.json
[2026-01-13 02:08:58] -rw------- 1 boinc boinc    1516240 Jan 13 02:07 agis_ddmendpoints.agis.ALL.json
[2026-01-13 02:08:58] -rw------- 1 boinc boinc    1946525 Jan 13 02:07 log.48187943._000692.job.log.tgz.1
[2026-01-13 02:08:58] -rw------- 1 boinc boinc      28049 Jan 13 02:08 heartbeat.json
[2026-01-13 02:08:58] -rw------- 1 boinc boinc         95 Jan 13 02:08 pilot_heartbeat.json
[2026-01-13 02:08:58] -rw------- 1 boinc boinc       5137 Jan 13 02:08 pilotlog.txt
[2026-01-13 02:08:58] -rw------- 1 boinc boinc    8068405 Jan 13 02:08 log.48187943._000692.job.log.1
[2026-01-13 02:08:58] -rw------- 1 boinc boinc        353 Jan 13 02:08 output.list
[2026-01-13 02:08:58] -rw-r--r-- 1 boinc boinc        620 Jan 13 02:08 runtime_log
[2026-01-13 02:08:58] -rw------- 1 boinc boinc   10055680 Jan 13 02:08 result.tar.gz
[2026-01-13 02:08:58] -rw-r--r-- 1 boinc boinc       9223 Jan 13 02:08 runtime_log.err
[2026-01-13 02:08:58] -rw------- 1 boinc boinc        670 Jan 13 02:08 ZOWLDmupSz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSFnKDmZEV5Lm.diag
[2026-01-13 02:08:58] -rw-r--r-- 1 boinc boinc         28 Jan 13 02:08 wrapper_checkpoint.txt
[2026-01-13 02:08:58] -rw-r--r-- 1 boinc boinc       8192 Jan 13 02:08 boinc_mmap_file
[2026-01-13 02:08:58] -rw-r--r-- 1 boinc boinc      20914 Jan 13 02:08 stderr.txt
[2026-01-13 02:08:58] HITS file was successfully produced:
[2026-01-13 02:08:58] -rw------- 1 boinc boinc 1190849070 Jan 13 02:07 shared/HITS.pool.root.1
[2026-01-13 02:08:58]  *** Contents of shared directory: ***
[2026-01-13 02:08:58] total 1489748
[2026-01-13 02:08:58] -rw-r--r-- 2 boinc boinc  323975106 Jan 12 09:59 ATLAS.root_0
[2026-01-13 02:08:58] -rw-r--r-- 2 boinc boinc      15847 Jan 12 09:59 start_atlas.sh
[2026-01-13 02:08:58] -rw-r--r-- 2 boinc boinc     592616 Jan 12 09:59 input.tar.gz
[2026-01-13 02:08:58] -rw------- 1 boinc boinc 1190849070 Jan 13 02:07 HITS.pool.root.1
[2026-01-13 02:08:58] -rw------- 1 boinc boinc   10055680 Jan 13 02:08 result.tar.gz
02:08:59 (1844970): run_atlas exited; CPU time 233109.619387
02:08:59 (1844970): called boinc_finish(0)

</stderr_txt>
]]>

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