Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:54:45 (3951098): wrapper (7.7.26015): starting
03:54:45 (3951098): wrapper: running run_atlas (--nthreads 9)
[2026-01-12 03:54:45] Arguments: --nthreads 9
[2026-01-12 03:54:45] Threads: 9
[2026-01-12 03:54:45] Checking for CVMFS
[2026-01-12 03:54:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 03:54:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 03:54:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 03:54:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 03:54:46] 2.13.3.0 6948 26300 262664 155045 3 62 35761448 40960000 13072 16776704 0 26662055 99.667 22251505 43219 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 03:54:46] CVMFS is ok
[2026-01-12 03:54:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 03:54:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 03:54:46] Further information can be found at the LHC@home message board.
[2026-01-12 03:54:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 03:54:46] Checking for apptainer binary...
[2026-01-12 03:54:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 03:54:46] Running /usr/bin/apptainer --version
[2026-01-12 03:54:46] apptainer version 1.4.5-2.el9
[2026-01-12 03:54:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 03:54:46] c-206-41.aglt2.org
[2026-01-12 03:54:46] apptainer works
[2026-01-12 03:54:46] Set ATHENA_PROC_NUMBER=9
[2026-01-12 03:54:46] Set ATHENA_CORE_NUMBER=9
[2026-01-12 03:54:46] Starting ATLAS job with PandaID=6966848141
[2026-01-12 03:54:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 02:34:44]  *** The last 200 lines of the pilot log: ***
[2026-01-13 02:34:44] 2026-01-13 07:34:01,910 | INFO     | executing command: lscpu
[2026-01-13 02:34:44] 2026-01-13 07:34:01,965 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-13 02:34:44] 2026-01-13 07:34:02,066 | INFO     | PID=3958175 has CPU usage=16.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-13 02:34:44] 2026-01-13 07:34:02,066 | INFO     | .. there are 10 such processes running
[2026-01-13 02:34:44] 2026-01-13 07:34:02,586 | INFO     | monitor loop #5320: job 0:6966848141 is in state 'finished'
[2026-01-13 02:34:44] 2026-01-13 07:34:02,586 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 02:34:44] 2026-01-13 07:34:03,066 | INFO     | time since job start (81531s) is within the limit (349056.0s)
[2026-01-13 02:34:44] 2026-01-13 07:34:05,071 | INFO     | time since job start (81533s) is within the limit (349056.0s)
[2026-01-13 02:34:44] 2026-01-13 07:34:05,089 | INFO     | monitor loop #5321: job 0:6966848141 is in state 'finished'
[2026-01-13 02:34:44] 2026-01-13 07:34:05,090 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 02:34:44] 2026-01-13 07:34:06,727 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-13 02:34:44] 2026-01-13 07:34:06,761 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3223.0931562500004
[2026-01-13 02:34:44] 2026-01-13 07:34:06,771 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6966848141/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 02:34:44] 2026-01-13 07:34:06,772 | INFO     | extracted standard info from prmon json
[2026-01-13 02:34:44] 2026-01-13 07:34:06,772 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 02:34:44] 2026-01-13 07:34:06,772 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 02:34:44] 2026-01-13 07:34:06,788 | INFO     | fitting pss+swap vs Time
[2026-01-13 02:34:44] 2026-01-13 07:34:06,790 | INFO     | sum of square deviations: 739502152028.3815
[2026-01-13 02:34:44] 2026-01-13 07:34:06,812 | INFO     | sum of deviations: 4500604956040.321
[2026-01-13 02:34:44] 2026-01-13 07:34:06,812 | INFO     | mean x: 1768248907.111527
[2026-01-13 02:34:44] 2026-01-13 07:34:06,812 | INFO     | mean y: 3620081.011227545
[2026-01-13 02:34:44] 2026-01-13 07:34:06,813 | INFO     | intersect: -10757930474.359695
[2026-01-13 02:34:44] 2026-01-13 07:34:06,814 | INFO     | chi2: 10.380389558495988
[2026-01-13 02:34:44] 2026-01-13 07:34:06,815 | INFO     | sum of square deviations: 731233066646.6501
[2026-01-13 02:34:44] 2026-01-13 07:34:06,845 | INFO     | sum of deviations: 5093451591941.011
[2026-01-13 02:34:44] 2026-01-13 07:34:06,845 | INFO     | mean x: 1768248754.6288505
[2026-01-13 02:34:44] 2026-01-13 07:34:06,845 | INFO     | mean y: 3631012.2652141247
[2026-01-13 02:34:44] 2026-01-13 07:34:06,846 | INFO     | intersect: -12313220953.29857
[2026-01-13 02:34:44] 2026-01-13 07:34:06,847 | INFO     | chi2: 6.884553563306059
[2026-01-13 02:34:44] 2026-01-13 07:34:06,847 | INFO     | current chi2=6.884553563306059 (change=33.67731023474653 %)
[2026-01-13 02:34:44] 2026-01-13 07:34:06,848 | INFO     | sum of square deviations: 723025889401.617
[2026-01-13 02:34:44] 2026-01-13 07:34:06,879 | INFO     | sum of deviations: 5389641739028.982
[2026-01-13 02:34:44] 2026-01-13 07:34:06,879 | INFO     | mean x: 1768248602.1463046
[2026-01-13 02:34:44] 2026-01-13 07:34:06,879 | INFO     | mean y: 3636514.752639517
[2026-01-13 02:34:44] 2026-01-13 07:34:06,879 | INFO     | intersect: -13177394221.220982
[2026-01-13 02:34:44] 2026-01-13 07:34:06,880 | INFO     | chi2: 5.838722025359684
[2026-01-13 02:34:44] 2026-01-13 07:34:06,880 | INFO     | current chi2=5.838722025359684 (change=15.190985563981178 %)
[2026-01-13 02:34:44] 2026-01-13 07:34:06,880 | INFO     | right removable region: 1325
[2026-01-13 02:34:44] 2026-01-13 07:34:06,882 | INFO     | sum of square deviations: 731229552211.4159
[2026-01-13 02:34:44] 2026-01-13 07:34:06,913 | INFO     | sum of deviations: 4003951032915.047
[2026-01-13 02:34:44] 2026-01-13 07:34:06,913 | INFO     | mean x: 1768249059.6265965
[2026-01-13 02:34:44] 2026-01-13 07:34:06,913 | INFO     | mean y: 3629229.1570247933
[2026-01-13 02:34:44] 2026-01-13 07:34:06,913 | INFO     | intersect: -9678669068.732307
[2026-01-13 02:34:44] 2026-01-13 07:34:06,914 | INFO     | chi2: 7.833337847922168
[2026-01-13 02:34:44] 2026-01-13 07:34:06,914 | INFO     | current chi2=7.833337847922168 (change=24.53714955706211 %)
[2026-01-13 02:34:44] 2026-01-13 07:34:06,914 | INFO     | left removable region: 10
[2026-01-13 02:34:44] 2026-01-13 07:34:06,915 | INFO     | sum of square deviations: 705179998934.5751
[2026-01-13 02:34:44] 2026-01-13 07:34:06,948 | INFO     | sum of deviations: 4810777507738.8
[2026-01-13 02:34:44] 2026-01-13 07:34:06,948 | INFO     | mean x: 1768248876.6790874
[2026-01-13 02:34:44] 2026-01-13 07:34:06,948 | INFO     | mean y: 3649321.8288973384
[2026-01-13 02:34:44] 2026-01-13 07:34:06,948 | INFO     | intersect: -12059443699.61878
[2026-01-13 02:34:44] 2026-01-13 07:34:06,949 | INFO     | chi2: 3.037897178864896
[2026-01-13 02:34:44] 2026-01-13 07:34:06,950 | INFO     | current memory leak: 6.82 B/s (using 1315 data points, chi2=3.04)
[2026-01-13 02:34:44] 2026-01-13 07:34:06,951 | INFO     | could have reported an average CPU frequency of 3226 MHz (48 samples)
[2026-01-13 02:34:44] 2026-01-13 07:34:06,951 | INFO     | ..............................
[2026-01-13 02:34:44] 2026-01-13 07:34:06,951 | INFO     | . Timing measurements:
[2026-01-13 02:34:44] 2026-01-13 07:34:06,951 | INFO     | . get job = 0 s
[2026-01-13 02:34:44] 2026-01-13 07:34:06,951 | INFO     | . initial setup = 2 s
[2026-01-13 02:34:44] 2026-01-13 07:34:06,952 | INFO     | . payload setup = 26 s
[2026-01-13 02:34:44] 2026-01-13 07:34:06,952 | INFO     | . stage-in = 0 s
[2026-01-13 02:34:44] 2026-01-13 07:34:06,952 | INFO     | . payload execution = 81455 s
[2026-01-13 02:34:44] 2026-01-13 07:34:06,952 | INFO     | . stage-out = 5 s
[2026-01-13 02:34:44] 2026-01-13 07:34:06,952 | INFO     | . log creation = 1 s
[2026-01-13 02:34:44] 2026-01-13 07:34:06,952 | INFO     | ..............................
[2026-01-13 02:34:44] 2026-01-13 07:34:07,028 | INFO     | 
[2026-01-13 02:34:44] 2026-01-13 07:34:07,033 | INFO     | job summary report
[2026-01-13 02:34:44] 2026-01-13 07:34:07,033 | INFO     | --------------------------------------------------
[2026-01-13 02:34:44] 2026-01-13 07:34:07,033 | INFO     | PanDA job id: 6966848141
[2026-01-13 02:34:44] 2026-01-13 07:34:07,033 | INFO     | task id: 48187943
[2026-01-13 02:34:44] 2026-01-13 07:34:07,033 | INFO     | errors: (none)
[2026-01-13 02:34:44] 2026-01-13 07:34:07,033 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 02:34:44] 2026-01-13 07:34:07,034 | INFO     | pilot state: finished 
[2026-01-13 02:34:44] 2026-01-13 07:34:07,034 | INFO     | transexitcode: 0
[2026-01-13 02:34:44] 2026-01-13 07:34:07,034 | INFO     | exeerrorcode: 0
[2026-01-13 02:34:44] 2026-01-13 07:34:07,034 | INFO     | exeerrordiag: 
[2026-01-13 02:34:44] 2026-01-13 07:34:07,034 | INFO     | exitcode: 0
[2026-01-13 02:34:44] 2026-01-13 07:34:07,034 | INFO     | exitmsg: OK
[2026-01-13 02:34:44] 2026-01-13 07:34:07,034 | INFO     | cpuconsumptiontime: 243672 s
[2026-01-13 02:34:44] 2026-01-13 07:34:07,034 | INFO     | nevents: 2050
[2026-01-13 02:34:44] 2026-01-13 07:34:07,034 | INFO     | neventsw: 0
[2026-01-13 02:34:44] 2026-01-13 07:34:07,061 | INFO     | pid: 3978635
[2026-01-13 02:34:44] 2026-01-13 07:34:07,062 | INFO     | pgrp: 3978635
[2026-01-13 02:34:44] 2026-01-13 07:34:07,062 | INFO     | corecount: 9
[2026-01-13 02:34:44] 2026-01-13 07:34:07,062 | INFO     | event service: False
[2026-01-13 02:34:44] 2026-01-13 07:34:07,062 | INFO     | sizes: {0: 2284619, 1: 2284647, 12: 2284647, 13: 2284937, 22: 2284993, 81487: 2368089, 81488: 2368216, 81493: 2377270, 81495: 2377326, 81500: 2377572}
[2026-01-13 02:34:44] 2026-01-13 07:34:07,062 | INFO     | --------------------------------------------------
[2026-01-13 02:34:44] 2026-01-13 07:34:07,062 | INFO     | 
[2026-01-13 02:34:44] 2026-01-13 07:34:07,062 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-13 02:34:44] 2026-01-13 07:34:07,077 | INFO     | time since job start (81535s) is within the limit (349056.0s)
[2026-01-13 02:34:44] 2026-01-13 07:34:07,084 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,085 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,085 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,085 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,085 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,085 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,085 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,085 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,085 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,085 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,085 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,085 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,085 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,086 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,086 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,086 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,086 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,086 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 02:34:44] 2026-01-13 07:34:07,086 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,086 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 02:34:44] 2026-01-13 07:34:07,086 | INFO     | job 6966848141 has completed (purged errors)
[2026-01-13 02:34:44] 2026-01-13 07:34:07,086 | INFO     | overall cleanup function is called
[2026-01-13 02:34:44] 2026-01-13 07:34:08,107 | INFO     | --- collectZombieJob: --- 10, [3978635]
[2026-01-13 02:34:44] 2026-01-13 07:34:08,107 | INFO     | zombie collector waiting for pid 3978635
[2026-01-13 02:34:44] 2026-01-13 07:34:08,108 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 02:34:44] 2026-01-13 07:34:08,108 | INFO     | collected zombie processes
[2026-01-13 02:34:44] 2026-01-13 07:34:08,108 | INFO     | will attempt to kill all subprocesses of pid=3978635
[2026-01-13 02:34:44] 2026-01-13 07:34:08,493 | INFO     | process IDs to be killed: [3978635] (in reverse order)
[2026-01-13 02:34:44] 2026-01-13 07:34:08,572 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 02:34:44] 2026-01-13 07:34:08,572 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 02:34:44] 2026-01-13 07:34:08,581 | INFO     | did not find any defunct processes belonging to 3978635
[2026-01-13 02:34:44] 2026-01-13 07:34:08,589 | INFO     | did not find any defunct processes belonging to 3978635
[2026-01-13 02:34:44] 2026-01-13 07:34:08,589 | INFO     | ready for new job
[2026-01-13 02:34:44] 2026-01-13 07:34:08,589 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 02:34:44] 2026-01-13 07:34:08,637 | INFO     | ***************************************
[2026-01-13 02:34:44] 2026-01-13 07:34:08,637 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 02:34:44] 2026-01-13 07:34:08,637 | INFO     | ***************************************
[2026-01-13 02:34:44] 2026-01-13 07:34:08,637 | INFO     | 
[2026-01-13 02:34:44] 2026-01-13 07:34:08,641 | INFO     | architecture information:
[2026-01-13 02:34:44] 2026-01-13 07:34:08,642 | INFO     | executing command: cat /etc/os-release
[2026-01-13 02:34:44] 2026-01-13 07:34:08,663 | INFO     | cat /etc/os-release:
[2026-01-13 02:34:44] NAME="CentOS Linux"
[2026-01-13 02:34:44] VERSION="7 (Core)"
[2026-01-13 02:34:44] ID="centos"
[2026-01-13 02:34:44] ID_LIKE="rhel fedora"
[2026-01-13 02:34:44] VERSION_ID="7"
[2026-01-13 02:34:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 02:34:44] ANSI_COLOR="0;31"
[2026-01-13 02:34:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 02:34:44] HOME_URL="https://www.centos.org/"
[2026-01-13 02:34:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 02:34:44] 
[2026-01-13 02:34:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 02:34:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 02:34:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 02:34:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 02:34:44] 
[2026-01-13 02:34:44] 2026-01-13 07:34:08,663 | INFO     | ***************************************
[2026-01-13 02:34:44] 2026-01-13 07:34:09,166 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-13 02:34:44] 2026-01-13 07:34:09,201 | INFO     | sufficient remaining disk space (83504398336 B)
[2026-01-13 02:34:44] 2026-01-13 07:34:09,202 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 02:34:44] 2026-01-13 07:34:09,202 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 02:34:44] 2026-01-13 07:34:09,202 | INFO     | update_server=False
[2026-01-13 02:34:44] 2026-01-13 07:34:09,202 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 02:34:44] 2026-01-13 07:34:09,202 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 02:34:44] 2026-01-13 07:34:09,202 | INFO     | aborting loop
[2026-01-13 02:34:44] 2026-01-13 07:34:09,233 | INFO     | all job control threads have been joined
[2026-01-13 02:34:44] 2026-01-13 07:34:10,084 | INFO     | all payload control threads have been joined
[2026-01-13 02:34:44] 2026-01-13 07:34:10,197 | INFO     | all data control threads have been joined
[2026-01-13 02:34:44] 2026-01-13 07:34:10,208 | INFO     | [job] retrieve thread has finished
[2026-01-13 02:34:44] 2026-01-13 07:34:10,234 | INFO     | [job] job monitor thread has finished
[2026-01-13 02:34:44] 2026-01-13 07:34:10,238 | INFO     | [job] control thread has finished
[2026-01-13 02:34:44] 2026-01-13 07:34:10,287 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 02:34:44] 2026-01-13 07:34:10,304 | INFO     | [data] copytool_in thread has finished
[2026-01-13 02:34:44] 2026-01-13 07:34:10,398 | INFO     | [payload] failed_post thread has finished
[2026-01-13 02:34:44] 2026-01-13 07:34:10,445 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 02:34:44] 2026-01-13 07:34:11,090 | INFO     | [payload] control thread has finished
[2026-01-13 02:34:44] 2026-01-13 07:34:11,202 | INFO     | [data] control thread has finished
[2026-01-13 02:34:44] 2026-01-13 07:34:11,367 | INFO     | [job] validate thread has finished
[2026-01-13 02:34:44] 2026-01-13 07:34:11,390 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 02:34:44] 2026-01-13 07:34:11,475 | INFO     | [payload] validate_post thread has finished
[2026-01-13 02:34:44] 2026-01-13 07:34:11,542 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 02:34:44] 2026-01-13 07:34:11,672 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 02:34:44] 2026-01-13 07:34:12,041 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 02:34:44] 2026-01-13 07:34:12,289 | INFO     | [data] copytool_out thread has finished
[2026-01-13 02:34:44] 2026-01-13 07:34:12,417 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 02:34:44] 2026-01-13 07:34:13,048 | INFO     | [job] queue monitor thread has finished
[2026-01-13 02:34:44] 2026-01-13 07:34:16,424 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 02:34:44] 2026-01-13 07:34:37,468 | INFO     | [monitor] cgroup control has ended
[2026-01-13 02:34:44] 2026-01-13 07:34:38,482 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140058428823360)>', '<ExcThread(monitor, started 140058061428480)>']
[2026-01-13 02:34:44] 2026-01-13 07:34:40,392 | INFO     | PID=3958175 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 02:34:44] 2026-01-13 07:34:40,393 | INFO     | .. there are 10 such processes running
[2026-01-13 02:34:44] 2026-01-13 07:34:40,393 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 02:34:44] 2026-01-13 07:34:40,393 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 02:34:44] 2026-01-13 07:34:40,393 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 02:34:44] 2026-01-13 07:34:40,393 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 02:34:44] 2026-01-13 07:34:40,393 | INFO     | [monitor] control thread has ended
[2026-01-13 02:34:44] 2026-01-13 07:34:43,507 | INFO     | all workflow threads have been joined
[2026-01-13 02:34:44] 2026-01-13 07:34:43,508 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 02:34:44] 2026-01-13 07:34:43,508 | INFO     | traces error code: 0
[2026-01-13 02:34:44] 2026-01-13 07:34:43,509 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 02:34:44] 2026-01-13 07:34:44,303 [wrapper] ==== pilot stdout END ====
[2026-01-13 02:34:44] 2026-01-13 07:34:44,307 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 02:34:44] 2026-01-13 07:34:44,312 [wrapper] pilotpid: 3958175
[2026-01-13 02:34:44] 2026-01-13 07:34:44,317 [wrapper] Pilot exit status: 0
[2026-01-13 02:34:44] 2026-01-13 07:34:44,333 [wrapper] pandaids: 6966848141
[2026-01-13 02:34:44] 2026-01-13 07:34:44,399 [wrapper] cleanup supervisor_pilot 2199726 3958176
[2026-01-13 02:34:44] 2026-01-13 07:34:44,402 [wrapper] Test setup, not cleaning
[2026-01-13 02:34:44] 2026-01-13 07:34:44,404 [wrapper] apfmon messages muted
[2026-01-13 02:34:44] 2026-01-13 07:34:44,407 [wrapper] ==== wrapper stdout END ====
[2026-01-13 02:34:44] 2026-01-13 07:34:44,409 [wrapper] ==== wrapper stderr END ====
[2026-01-13 02:34:44]  *** Error codes and diagnostics ***
[2026-01-13 02:34:44]     "exeErrorCode": 0,
[2026-01-13 02:34:44]     "exeErrorDiag": "",
[2026-01-13 02:34:44]     "pilotErrorCode": 0,
[2026-01-13 02:34:44]     "pilotErrorDiag": "",
[2026-01-13 02:34:44]  *** Listing of results directory ***
[2026-01-13 02:34:44] total 1505256
[2026-01-13 02:34:44] -rwx------. 1 boincer umatlas      36322 Jan 12 03:50 runpilot2-wrapper.sh
[2026-01-13 02:34:44] -rw-r--r--. 1 boincer umatlas       5112 Jan 12 03:50 queuedata.json
[2026-01-13 02:34:44] -rw-r--r--. 1 boincer umatlas     579449 Jan 12 03:50 pilot3.tar.gz
[2026-01-13 02:34:44] -rw-r--r--. 1 boincer umatlas        100 Jan 12 03:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 02:34:44] -rwxr-xr-x. 1 boincer umatlas       7986 Jan 12 03:54 run_atlas
[2026-01-13 02:34:44] -rw-r--r--. 1 boincer umatlas        105 Jan 12 03:54 job.xml
[2026-01-13 02:34:44] -rw-r--r--. 2 boincer umatlas  322628463 Jan 12 03:54 EVNT.48118027._000086.pool.root.1
[2026-01-13 02:34:44] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 03:54 start_atlas.sh
[2026-01-13 02:34:44] drwxrwx--x. 2 boincer umatlas       4096 Jan 12 03:54 shared
[2026-01-13 02:34:44] -rw-r--r--. 2 boincer umatlas     592608 Jan 12 03:54 input.tar.gz
[2026-01-13 02:34:44] -rw-r--r--. 1 boincer umatlas          0 Jan 12 03:54 boinc_lockfile
[2026-01-13 02:34:44] -rw-r--r--. 1 boincer umatlas       2895 Jan 12 03:54 pandaJob.out
[2026-01-13 02:34:44] -rw-------. 1 boincer umatlas         57 Jan 12 03:54 setup.sh.local
[2026-01-13 02:34:44] -rw-------. 1 boincer umatlas     987688 Jan 12 03:55 agis_schedconf.cvmfs.json
[2026-01-13 02:34:44] drwx------. 5 boincer umatlas       4096 Jan 12 03:55 pilot3
[2026-01-13 02:34:44] -rw-r--r--. 1 boincer umatlas        533 Jan 13 02:03 boinc_task_state.xml
[2026-01-13 02:34:44] -rw-r--r--. 1 boincer umatlas       6907 Jan 13 02:29 init_data.xml
[2026-01-13 02:34:44] -rw-------. 1 boincer umatlas 1187403410 Jan 13 02:33 HITS.48187943._000419.pool.root.1
[2026-01-13 02:34:44] -rw-------. 1 boincer umatlas       1045 Jan 13 02:33 memory_monitor_summary.json
[2026-01-13 02:34:44] -rw-------. 1 boincer umatlas    1516240 Jan 13 02:33 agis_ddmendpoints.agis.ALL.json
[2026-01-13 02:34:44] -rw-------. 1 boincer umatlas    2886256 Jan 13 02:33 log.48187943._000419.job.log.tgz.1
[2026-01-13 02:34:44] -rw-------. 1 boincer umatlas         95 Jan 13 02:33 pilot_heartbeat.json
[2026-01-13 02:34:44] -rw-------. 1 boincer umatlas      27944 Jan 13 02:34 heartbeat.json
[2026-01-13 02:34:44] -rw-r--r--. 1 boincer umatlas       8192 Jan 13 02:34 boinc_mmap_file
[2026-01-13 02:34:44] -rw-r--r--. 1 boincer umatlas         29 Jan 13 02:34 wrapper_checkpoint.txt
[2026-01-13 02:34:44] -rw-------. 1 boincer umatlas       4824 Jan 13 02:34 pilotlog.txt
[2026-01-13 02:34:44] -rw-------. 1 boincer umatlas   10810193 Jan 13 02:34 log.48187943._000419.job.log.1
[2026-01-13 02:34:44] -rw-------. 1 boincer umatlas        353 Jan 13 02:34 output.list
[2026-01-13 02:34:44] -rw-r--r--. 1 boincer umatlas        620 Jan 13 02:34 runtime_log
[2026-01-13 02:34:44] -rw-------. 1 boincer umatlas   13731840 Jan 13 02:34 result.tar.gz
[2026-01-13 02:34:44] -rw-------. 1 boincer umatlas        661 Jan 13 02:34 SvaLDmxnSz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuDnKDmg0iDFn.diag
[2026-01-13 02:34:44] -rw-r--r--. 1 boincer umatlas       9343 Jan 13 02:34 runtime_log.err
[2026-01-13 02:34:44] -rw-r--r--. 1 boincer umatlas      21603 Jan 13 02:34 stderr.txt
[2026-01-13 02:34:44] HITS file was successfully produced:
[2026-01-13 02:34:44] -rw-------. 1 boincer umatlas 1187403410 Jan 13 02:33 shared/HITS.pool.root.1
[2026-01-13 02:34:44]  *** Contents of shared directory: ***
[2026-01-13 02:34:44] total 1488660
[2026-01-13 02:34:44] -rw-r--r--. 2 boincer umatlas  322628463 Jan 12 03:54 ATLAS.root_0
[2026-01-13 02:34:44] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 03:54 start_atlas.sh
[2026-01-13 02:34:44] -rw-r--r--. 2 boincer umatlas     592608 Jan 12 03:54 input.tar.gz
[2026-01-13 02:34:44] -rw-------. 1 boincer umatlas 1187403410 Jan 13 02:33 HITS.pool.root.1
[2026-01-13 02:34:44] -rw-------. 1 boincer umatlas   13731840 Jan 13 02:34 result.tar.gz
02:34:46 (3951098): run_atlas exited; CPU time 242753.277385
02:34:46 (3951098): called boinc_finish(0)

</stderr_txt>
]]>

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