Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:54:34 (2459000): wrapper (7.7.26015): starting
03:54:34 (2459000): wrapper: running run_atlas (--nthreads 9)
[2026-01-12 03:54:34] Arguments: --nthreads 9
[2026-01-12 03:54:34] Threads: 9
[2026-01-12 03:54:34] Checking for CVMFS
[2026-01-12 03:54:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 03:54:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 03:54:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 03:54:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 03:54:35] 2.13.3.0 11959 97517 403664 155045 1 164 24634889 32935936 15875 16776704 0 371016759 99.470 496666441 33935 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-12 03:54:35] CVMFS is ok
[2026-01-12 03:54:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 03:54:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 03:54:35] Further information can be found at the LHC@home message board.
[2026-01-12 03:54:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 03:54:35] Checking for apptainer binary...
[2026-01-12 03:54:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 03:54:35] Running /usr/bin/apptainer --version
[2026-01-12 03:54:35] apptainer version 1.4.5-2.el9
[2026-01-12 03:54:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 03:54:35] c6-12-27-3.aglt2.org
[2026-01-12 03:54:35] apptainer works
[2026-01-12 03:54:35] Set ATHENA_PROC_NUMBER=9
[2026-01-12 03:54:35] Set ATHENA_CORE_NUMBER=9
[2026-01-12 03:54:35] Starting ATLAS job with PandaID=6966855588
[2026-01-12 03:54:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:40:09 (2459000): BOINC client no longer exists - exiting
22:40:09 (2459000): timer handler: client dead, exiting
22:45:07 (1620837): wrapper (7.7.26015): starting
22:45:07 (1620837): wrapper: running run_atlas (--nthreads 11)
[2026-01-12 22:45:07] Arguments: --nthreads 11
[2026-01-12 22:45:07] Threads: 11
[2026-01-12 22:45:07] This job has been restarted, cleaning up previous attempt
[2026-01-12 22:45:07] Checking for CVMFS
[2026-01-12 22:45:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 22:45:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 22:45:08] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 22:45:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 22:45:09] 2.13.3.0 11959 98648 416088 155075 1 327 20180629 32935937 26023 16776704 0 374232345 99.471 500067105 33934 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-12 22:45:09] CVMFS is ok
[2026-01-12 22:45:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 22:45:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 22:45:09] Further information can be found at the LHC@home message board.
[2026-01-12 22:45:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 22:45:09] Checking for apptainer binary...
[2026-01-12 22:45:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 22:45:09] Running /usr/bin/apptainer --version
[2026-01-12 22:45:09] apptainer version 1.4.5-2.el9
[2026-01-12 22:45:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 22:45:09] c6-12-27-3.aglt2.org
[2026-01-12 22:45:09] apptainer works
[2026-01-12 22:45:09] Set ATHENA_PROC_NUMBER=11
[2026-01-12 22:45:09] Set ATHENA_CORE_NUMBER=11
[2026-01-12 22:45:09] Starting ATLAS job with PandaID=6966855588
[2026-01-12 22:45:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 23:36:35]  *** The last 200 lines of the pilot log: ***
[2026-01-13 23:36:35] 2026-01-14 04:35:20,187 | INFO     | fitting pss+swap vs Time
[2026-01-13 23:36:35] 2026-01-14 04:35:20,189 | INFO     | sum of square deviations: 971097794394.5532
[2026-01-13 23:36:35] 2026-01-14 04:35:20,276 | INFO     | time since job start (89380s) is within the limit (349056.0s)
[2026-01-13 23:36:35] 2026-01-14 04:35:20,335 | INFO     | monitor loop #4879: job 0:6966855588 is in state 'finished'
[2026-01-13 23:36:35] 2026-01-14 04:35:20,335 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 23:36:35] 2026-01-14 04:35:20,390 | INFO     | sum of deviations: 7633442548960.514
[2026-01-13 23:36:35] 2026-01-14 04:35:20,390 | INFO     | mean x: 1768320629.0314422
[2026-01-13 23:36:35] 2026-01-14 04:35:20,390 | INFO     | mean y: 3933155.902255639
[2026-01-13 23:36:35] 2026-01-14 04:35:20,390 | INFO     | intersect: -13896184842.274244
[2026-01-13 23:36:35] 2026-01-14 04:35:20,392 | INFO     | chi2: 14.371637420125799
[2026-01-13 23:36:35] 2026-01-14 04:35:20,404 | INFO     | sum of square deviations: 961179080904.5383
[2026-01-13 23:36:35] 2026-01-14 04:35:20,572 | INFO     | sum of deviations: 8387619497915.308
[2026-01-13 23:36:35] 2026-01-14 04:35:20,583 | INFO     | mean x: 1768320476.5521262
[2026-01-13 23:36:35] 2026-01-14 04:35:20,583 | INFO     | mean y: 3944748.0816186555
[2026-01-13 23:36:35] 2026-01-14 04:35:20,583 | INFO     | intersect: -15427101976.045511
[2026-01-13 23:36:35] 2026-01-14 04:35:20,585 | INFO     | chi2: 10.331005009575332
[2026-01-13 23:36:35] 2026-01-14 04:35:20,586 | INFO     | current chi2=10.331005009575332 (change=28.11532390103325 %)
[2026-01-13 23:36:35] 2026-01-14 04:35:20,693 | INFO     | sum of square deviations: 951328004906.5562
[2026-01-13 23:36:35] 2026-01-14 04:35:21,109 | INFO     | sum of deviations: 9119903169731.482
[2026-01-13 23:36:35] 2026-01-14 04:35:21,109 | INFO     | mean x: 1768320324.071576
[2026-01-13 23:36:35] 2026-01-14 04:35:21,109 | INFO     | mean y: 3956083.456985547
[2026-01-13 23:36:35] 2026-01-14 04:35:21,109 | INFO     | intersect: -16948041592.870255
[2026-01-13 23:36:35] 2026-01-14 04:35:21,129 | INFO     | chi2: 6.5829052850233625
[2026-01-13 23:36:35] 2026-01-14 04:35:21,130 | INFO     | current chi2=6.5829052850233625 (change=36.28010751207679 %)
[2026-01-13 23:36:35] 2026-01-14 04:35:21,132 | INFO     | sum of square deviations: 941544158394.6843
[2026-01-13 23:36:35] 2026-01-14 04:35:21,540 | INFO     | sum of deviations: 9767932642481.86
[2026-01-13 23:36:35] 2026-01-14 04:35:21,588 | INFO     | mean x: 1768320171.5883977
[2026-01-13 23:36:35] 2026-01-14 04:35:21,588 | INFO     | mean y: 3966177.8957182323
[2026-01-13 23:36:35] 2026-01-14 04:35:21,588 | INFO     | intersect: -18341251274.11131
[2026-01-13 23:36:35] 2026-01-14 04:35:21,590 | INFO     | chi2: 3.386555335919106
[2026-01-13 23:36:35] 2026-01-14 04:35:21,590 | INFO     | current chi2=3.386555335919106 (change=48.55530819160059 %)
[2026-01-13 23:36:35] 2026-01-14 04:35:21,641 | INFO     | sum of square deviations: 931827042902.4312
[2026-01-13 23:36:35] 2026-01-14 04:35:21,917 | INFO     | sum of deviations: 9838310168723.607
[2026-01-13 23:36:35] 2026-01-14 04:35:21,918 | INFO     | mean x: 1768320019.100485
[2026-01-13 23:36:35] 2026-01-14 04:35:21,918 | INFO     | mean y: 3967278.2924462925
[2026-01-13 23:36:35] 2026-01-14 04:35:21,918 | INFO     | intersect: -18666107772.63677
[2026-01-13 23:36:35] 2026-01-14 04:35:21,920 | INFO     | chi2: 3.1348651891988775
[2026-01-13 23:36:35] 2026-01-14 04:35:21,920 | INFO     | current chi2=3.1348651891988775 (change=7.432039986197954 %)
[2026-01-13 23:36:35] 2026-01-14 04:35:21,920 | INFO     | right removable region: 1442
[2026-01-13 23:36:35] 2026-01-14 04:35:21,922 | INFO     | sum of square deviations: 961173698264.5374
[2026-01-13 23:36:35] 2026-01-14 04:35:21,971 | INFO     | sum of deviations: 6962407585693.479
[2026-01-13 23:36:35] 2026-01-14 04:35:21,971 | INFO     | mean x: 1768320781.5521262
[2026-01-13 23:36:35] 2026-01-14 04:35:21,971 | INFO     | mean y: 3943464.8491083677
[2026-01-13 23:36:35] 2026-01-14 04:35:21,971 | INFO     | intersect: -12805156540.329622
[2026-01-13 23:36:35] 2026-01-14 04:35:21,973 | INFO     | chi2: 11.553359100953202
[2026-01-13 23:36:35] 2026-01-14 04:35:21,973 | INFO     | current chi2=11.553359100953202 (change=19.61000153834891 %)
[2026-01-13 23:36:35] 2026-01-14 04:35:21,973 | INFO     | left removable region: 10
[2026-01-13 23:36:35] 2026-01-14 04:35:21,975 | INFO     | sum of square deviations: 910677442659.7867
[2026-01-13 23:36:35] 2026-01-14 04:35:22,030 | INFO     | sum of deviations: 8966103773967.404
[2026-01-13 23:36:35] 2026-01-14 04:35:22,031 | INFO     | mean x: 1768320293.6403632
[2026-01-13 23:36:35] 2026-01-14 04:35:22,031 | INFO     | mean y: 3980550.0726256985
[2026-01-13 23:36:35] 2026-01-14 04:35:22,031 | INFO     | intersect: -17406073235.91441
[2026-01-13 23:36:35] 2026-01-14 04:35:22,033 | INFO     | chi2: 0.17694642323168383
[2026-01-13 23:36:35] 2026-01-14 04:35:22,033 | INFO     | current memory leak: 9.85 B/s (using 1432 data points, chi2=0.18)
[2026-01-13 23:36:35] 2026-01-14 04:35:22,035 | INFO     | could have reported an average CPU frequency of 2712 MHz (52 samples)
[2026-01-13 23:36:35] 2026-01-14 04:35:22,035 | INFO     | ..............................
[2026-01-13 23:36:35] 2026-01-14 04:35:22,035 | INFO     | . Timing measurements:
[2026-01-13 23:36:35] 2026-01-14 04:35:22,035 | INFO     | . get job = 0 s
[2026-01-13 23:36:35] 2026-01-14 04:35:22,035 | INFO     | . initial setup = 2 s
[2026-01-13 23:36:35] 2026-01-14 04:35:22,036 | INFO     | . payload setup = 32 s
[2026-01-13 23:36:35] 2026-01-14 04:35:22,036 | INFO     | . stage-in = 0 s
[2026-01-13 23:36:35] 2026-01-14 04:35:22,036 | INFO     | . payload execution = 89249 s
[2026-01-13 23:36:35] 2026-01-14 04:35:22,036 | INFO     | . stage-out = 24 s
[2026-01-13 23:36:35] 2026-01-14 04:35:22,036 | INFO     | . log creation = 6 s
[2026-01-13 23:36:35] 2026-01-14 04:35:22,036 | INFO     | ..............................
[2026-01-13 23:36:35] 2026-01-14 04:35:22,138 | INFO     | 
[2026-01-13 23:36:35] 2026-01-14 04:35:22,139 | INFO     | job summary report
[2026-01-13 23:36:35] 2026-01-14 04:35:22,139 | INFO     | --------------------------------------------------
[2026-01-13 23:36:35] 2026-01-14 04:35:22,139 | INFO     | PanDA job id: 6966855588
[2026-01-13 23:36:35] 2026-01-14 04:35:22,139 | INFO     | task id: 48187943
[2026-01-13 23:36:35] 2026-01-14 04:35:22,139 | INFO     | errors: (none)
[2026-01-13 23:36:35] 2026-01-14 04:35:22,139 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 23:36:35] 2026-01-14 04:35:22,139 | INFO     | pilot state: finished 
[2026-01-13 23:36:35] 2026-01-14 04:35:22,140 | INFO     | transexitcode: 0
[2026-01-13 23:36:35] 2026-01-14 04:35:22,140 | INFO     | exeerrorcode: 0
[2026-01-13 23:36:35] 2026-01-14 04:35:22,140 | INFO     | exeerrordiag: 
[2026-01-13 23:36:35] 2026-01-14 04:35:22,140 | INFO     | exitcode: 0
[2026-01-13 23:36:35] 2026-01-14 04:35:22,140 | INFO     | exitmsg: OK
[2026-01-13 23:36:35] 2026-01-14 04:35:22,140 | INFO     | cpuconsumptiontime: 311498 s
[2026-01-13 23:36:35] 2026-01-14 04:35:22,140 | INFO     | nevents: 2050
[2026-01-13 23:36:35] 2026-01-14 04:35:22,140 | INFO     | neventsw: 0
[2026-01-13 23:36:35] 2026-01-14 04:35:22,140 | INFO     | pid: 1657135
[2026-01-13 23:36:35] 2026-01-14 04:35:22,140 | INFO     | pgrp: 1657135
[2026-01-13 23:36:35] 2026-01-14 04:35:22,140 | INFO     | corecount: 11
[2026-01-13 23:36:35] 2026-01-14 04:35:22,140 | INFO     | event service: False
[2026-01-13 23:36:35] 2026-01-14 04:35:22,140 | INFO     | sizes: {0: 2284394, 1: 2284649, 2: 2284677, 13: 2284677, 14: 2284995, 24: 2285023, 89287: 2368711, 89288: 2368710, 89312: 2377796, 89317: 2377852, 89342: 2378098}
[2026-01-13 23:36:35] 2026-01-14 04:35:22,141 | INFO     | --------------------------------------------------
[2026-01-13 23:36:35] 2026-01-14 04:35:22,141 | INFO     | 
[2026-01-13 23:36:35] 2026-01-14 04:35:22,141 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-13 23:36:35] 2026-01-14 04:35:22,204 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,204 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,205 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,205 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,205 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,205 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,205 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,205 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,205 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,205 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,205 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,205 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,205 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,205 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,205 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,206 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,206 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,206 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 23:36:35] 2026-01-14 04:35:22,206 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,206 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 23:36:35] 2026-01-14 04:35:22,206 | INFO     | job 6966855588 has completed (purged errors)
[2026-01-13 23:36:35] 2026-01-14 04:35:22,206 | INFO     | overall cleanup function is called
[2026-01-13 23:36:35] 2026-01-14 04:35:23,228 | INFO     | --- collectZombieJob: --- 10, [1657135]
[2026-01-13 23:36:35] 2026-01-14 04:35:23,228 | INFO     | zombie collector waiting for pid 1657135
[2026-01-13 23:36:35] 2026-01-14 04:35:23,228 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 23:36:35] 2026-01-14 04:35:23,228 | INFO     | collected zombie processes
[2026-01-13 23:36:35] 2026-01-14 04:35:23,228 | INFO     | will attempt to kill all subprocesses of pid=1657135
[2026-01-13 23:36:35] 2026-01-14 04:35:25,076 | INFO     | process IDs to be killed: [1657135] (in reverse order)
[2026-01-13 23:36:35] 2026-01-14 04:35:25,454 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 23:36:35] 2026-01-14 04:35:25,454 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 23:36:35] 2026-01-14 04:35:25,475 | INFO     | did not find any defunct processes belonging to 1657135
[2026-01-13 23:36:35] 2026-01-14 04:35:25,524 | INFO     | did not find any defunct processes belonging to 1657135
[2026-01-13 23:36:35] 2026-01-14 04:35:25,525 | INFO     | ready for new job
[2026-01-13 23:36:35] 2026-01-14 04:35:25,525 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 23:36:35] 2026-01-14 04:35:25,564 | INFO     | ***************************************
[2026-01-13 23:36:35] 2026-01-14 04:35:25,564 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 23:36:35] 2026-01-14 04:35:25,564 | INFO     | ***************************************
[2026-01-13 23:36:35] 2026-01-14 04:35:25,564 | INFO     | 
[2026-01-13 23:36:35] 2026-01-14 04:35:25,601 | INFO     | architecture information:
[2026-01-13 23:36:35] 2026-01-14 04:35:25,605 | INFO     | executing command: cat /etc/os-release
[2026-01-13 23:36:35] 2026-01-14 04:35:25,654 | INFO     | cat /etc/os-release:
[2026-01-13 23:36:35] NAME="CentOS Linux"
[2026-01-13 23:36:35] VERSION="7 (Core)"
[2026-01-13 23:36:35] ID="centos"
[2026-01-13 23:36:35] ID_LIKE="rhel fedora"
[2026-01-13 23:36:35] VERSION_ID="7"
[2026-01-13 23:36:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 23:36:35] ANSI_COLOR="0;31"
[2026-01-13 23:36:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 23:36:35] HOME_URL="https://www.centos.org/"
[2026-01-13 23:36:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 23:36:35] 
[2026-01-13 23:36:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 23:36:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 23:36:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 23:36:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 23:36:35] 
[2026-01-13 23:36:35] 2026-01-14 04:35:25,654 | INFO     | ***************************************
[2026-01-13 23:36:35] 2026-01-14 04:35:26,158 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-13 23:36:35] 2026-01-14 04:35:26,426 | INFO     | sufficient remaining disk space (86919610368 B)
[2026-01-13 23:36:35] 2026-01-14 04:35:26,427 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 23:36:35] 2026-01-14 04:35:26,427 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 23:36:35] 2026-01-14 04:35:26,427 | INFO     | update_server=False
[2026-01-13 23:36:35] 2026-01-14 04:35:26,427 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 23:36:35] 2026-01-14 04:35:26,427 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 23:36:35] 2026-01-14 04:35:26,428 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 23:36:35] 2026-01-14 04:35:26,480 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 23:36:35] 2026-01-14 04:35:26,480 | INFO     | aborting loop
[2026-01-13 23:36:35] 2026-01-14 04:35:27,153 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 23:36:35] 2026-01-14 04:35:27,285 | INFO     | all data control threads have been joined
[2026-01-13 23:36:35] 2026-01-14 04:35:27,433 | INFO     | [job] retrieve thread has finished
[2026-01-13 23:36:35] 2026-01-14 04:35:27,486 | INFO     | [job] validate thread has finished
[2026-01-13 23:36:35] 2026-01-14 04:35:27,487 | INFO     | [job] job monitor thread has finished
[2026-01-13 23:36:35] 2026-01-14 04:35:27,532 | INFO     | all payload control threads have been joined
[2026-01-13 23:36:35] 2026-01-14 04:35:27,624 | INFO     | [payload] failed_post thread has finished
[2026-01-13 23:36:35] 2026-01-14 04:35:27,765 | INFO     | [payload] validate_post thread has finished
[2026-01-13 23:36:35] 2026-01-14 04:35:27,895 | INFO     | all job control threads have been joined
[2026-01-13 23:36:35] 2026-01-14 04:35:27,900 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 23:36:35] 2026-01-14 04:35:27,904 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 23:36:35] 2026-01-14 04:35:28,091 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 23:36:35] 2026-01-14 04:35:28,158 | INFO     | [job] queue monitor thread has finished
[2026-01-13 23:36:35] 2026-01-14 04:35:28,291 | INFO     | [data] control thread has finished
[2026-01-13 23:36:35] 2026-01-14 04:35:28,409 | INFO     | [data] copytool_in thread has finished
[2026-01-13 23:36:35] 2026-01-14 04:35:28,409 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 23:36:35] 2026-01-14 04:35:28,443 | INFO     | [data] copytool_out thread has finished
[2026-01-13 23:36:35] 2026-01-14 04:35:28,558 | INFO     | [payload] control thread has finished
[2026-01-13 23:36:35] 2026-01-14 04:35:28,901 | INFO     | [job] control thread has finished
[2026-01-13 23:36:35] 2026-01-14 04:35:30,455 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 23:36:35] 2026-01-14 04:35:59,758 | INFO     | PID=1632587 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 23:36:35] 2026-01-14 04:35:59,779 | INFO     | .. there are 32 such processes running
[2026-01-13 23:36:35] 2026-01-14 04:35:59,780 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 23:36:35] 2026-01-14 04:35:59,780 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 23:36:35] 2026-01-14 04:35:59,780 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 23:36:35] 2026-01-14 04:36:24,155 | INFO     | [monitor] cgroup control has ended
[2026-01-13 23:36:35] 2026-01-14 04:36:25,859 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139856137246528)>', '<ExcThread(monitor, started 139855115831040)>']
[2026-01-13 23:36:35] 2026-01-14 04:36:25,978 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 23:36:35] 2026-01-14 04:36:25,978 | INFO     | [monitor] control thread has ended
[2026-01-13 23:36:35] 2026-01-14 04:36:30,886 | INFO     | all workflow threads have been joined
[2026-01-13 23:36:35] 2026-01-14 04:36:30,886 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 23:36:35] 2026-01-14 04:36:30,886 | INFO     | traces error code: 0
[2026-01-13 23:36:35] 2026-01-14 04:36:30,886 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 23:36:35] 2026-01-14 04:36:33,247 [wrapper] ==== pilot stdout END ====
[2026-01-13 23:36:35] 2026-01-14 04:36:33,285 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 23:36:35] 2026-01-14 04:36:33,333 [wrapper] pilotpid: 1632587
[2026-01-13 23:36:35] 2026-01-14 04:36:33,377 [wrapper] Pilot exit status: 0
[2026-01-13 23:36:35] 2026-01-14 04:36:33,536 [wrapper] pandaids: 6966855588 6966855588
[2026-01-13 23:36:35] 2026-01-14 04:36:34,121 [wrapper] cleanup supervisor_pilot 3368262 1632588
[2026-01-13 23:36:35] 2026-01-14 04:36:34,144 [wrapper] Test setup, not cleaning
[2026-01-13 23:36:35] 2026-01-14 04:36:34,195 [wrapper] apfmon messages muted
[2026-01-13 23:36:35] 2026-01-14 04:36:34,205 [wrapper] ==== wrapper stdout END ====
[2026-01-13 23:36:35] 2026-01-14 04:36:34,212 [wrapper] ==== wrapper stderr END ====
[2026-01-13 23:36:35]  *** Error codes and diagnostics ***
[2026-01-13 23:36:35]     "exeErrorCode": 0,
[2026-01-13 23:36:35]     "exeErrorDiag": "",
[2026-01-13 23:36:35]     "pilotErrorCode": 0,
[2026-01-13 23:36:35]     "pilotErrorDiag": "",
[2026-01-13 23:36:35]  *** Listing of results directory ***
[2026-01-13 23:36:35] total 1808284
[2026-01-13 23:36:35] drwx------. 5 boincer umatlas       4096 Dec  3 09:30 pilot3
[2026-01-13 23:36:35] -rw-r--r--. 1 boincer umatlas     579449 Jan 12 03:50 pilot3.tar.gz
[2026-01-13 23:36:35] -rwx------. 1 boincer umatlas      36322 Jan 12 03:51 runpilot2-wrapper.sh
[2026-01-13 23:36:35] -rw-r--r--. 1 boincer umatlas       5112 Jan 12 03:51 queuedata.json
[2026-01-13 23:36:35] -rw-r--r--. 1 boincer umatlas        100 Jan 12 03:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 23:36:35] -rwxr-xr-x. 1 boincer umatlas       7986 Jan 12 03:54 run_atlas
[2026-01-13 23:36:35] -rw-r--r--. 1 boincer umatlas        105 Jan 12 03:54 job.xml
[2026-01-13 23:36:35] -rw-r--r--. 3 boincer umatlas  319560844 Jan 12 03:54 EVNT.48118027._000128.pool.root.1
[2026-01-13 23:36:35] -rw-r--r--. 3 boincer umatlas  319560844 Jan 12 03:54 ATLAS.root_0
[2026-01-13 23:36:35] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 03:54 start_atlas.sh
[2026-01-13 23:36:35] drwxrwx--x. 2 boincer umatlas       4096 Jan 12 03:54 shared
[2026-01-13 23:36:35] -rw-r--r--. 2 boincer umatlas     592602 Jan 12 03:54 input.tar.gz
[2026-01-13 23:36:35] -rw-r--r--. 1 boincer umatlas          0 Jan 12 03:54 boinc_lockfile
[2026-01-13 23:36:35] -rw-r--r--. 1 boincer umatlas       2896 Jan 12 22:45 pandaJob.out
[2026-01-13 23:36:35] -rw-------. 1 boincer umatlas         57 Jan 12 22:45 setup.sh.local
[2026-01-13 23:36:35] -rw-------. 1 boincer umatlas     987763 Jan 12 22:45 agis_schedconf.cvmfs.json
[2026-01-13 23:36:35] -rw-r--r--. 1 boincer umatlas        534 Jan 13 23:15 boinc_task_state.xml
[2026-01-13 23:36:35] -rw-------. 1 boincer umatlas 1181110594 Jan 13 23:31 HITS.48187943._000623.pool.root.1
[2026-01-13 23:36:35] -rw-r--r--. 1 boincer umatlas       6881 Jan 13 23:31 init_data.xml
[2026-01-13 23:36:35] -rw-------. 1 boincer umatlas       1069 Jan 13 23:34 memory_monitor_summary.json
[2026-01-13 23:36:35] -rw-------. 1 boincer umatlas    1516246 Jan 13 23:34 agis_ddmendpoints.agis.ALL.json
[2026-01-13 23:36:35] -rw-------. 1 boincer umatlas    3123245 Jan 13 23:34 log.48187943._000623.job.log.tgz.1
[2026-01-13 23:36:35] -rw-------. 1 boincer umatlas      27086 Jan 13 23:35 heartbeat.json
[2026-01-13 23:36:35] -rw-------. 1 boincer umatlas         96 Jan 13 23:35 pilot_heartbeat.json
[2026-01-13 23:36:35] -rw-r--r--. 1 boincer umatlas       8192 Jan 13 23:36 boinc_mmap_file
[2026-01-13 23:36:35] -rw-------. 1 boincer umatlas       4824 Jan 13 23:36 pilotlog.txt
[2026-01-13 23:36:35] -rw-r--r--. 1 boincer umatlas         30 Jan 13 23:36 wrapper_checkpoint.txt
[2026-01-13 23:36:35] -rw-------. 1 boincer umatlas   10625908 Jan 13 23:36 log.48187943._000623.job.log.1
[2026-01-13 23:36:35] -rw-------. 1 boincer umatlas        353 Jan 13 23:36 output.list
[2026-01-13 23:36:35] -rw-r--r--. 1 boincer umatlas        620 Jan 13 23:36 runtime_log
[2026-01-13 23:36:35] -rw-------. 1 boincer umatlas   13783040 Jan 13 23:36 result.tar.gz
[2026-01-13 23:36:35] -rw-r--r--. 1 boincer umatlas       9440 Jan 13 23:36 runtime_log.err
[2026-01-13 23:36:35] -rw-------. 1 boincer umatlas        792 Jan 13 23:36 HrnKDmwoSz8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmllhKDmbxLN4n.diag
[2026-01-13 23:36:35] -rw-r--r--. 1 boincer umatlas      23419 Jan 13 23:36 stderr.txt
[2026-01-13 23:36:35] HITS file was successfully produced:
[2026-01-13 23:36:35] -rw-------. 1 boincer umatlas 1181110594 Jan 13 23:31 shared/HITS.pool.root.1
[2026-01-13 23:36:35]  *** Contents of shared directory: ***
[2026-01-13 23:36:35] total 1479564
[2026-01-13 23:36:35] -rw-r--r--. 3 boincer umatlas  319560844 Jan 12 03:54 ATLAS.root_0
[2026-01-13 23:36:35] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 03:54 start_atlas.sh
[2026-01-13 23:36:35] -rw-r--r--. 2 boincer umatlas     592602 Jan 12 03:54 input.tar.gz
[2026-01-13 23:36:35] -rw-------. 1 boincer umatlas 1181110594 Jan 13 23:31 HITS.pool.root.1
[2026-01-13 23:36:35] -rw-------. 1 boincer umatlas   13783040 Jan 13 23:36 result.tar.gz
23:36:36 (1620837): run_atlas exited; CPU time 313725.890884
23:36:36 (1620837): called boinc_finish(0)

</stderr_txt>
]]>

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