Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:57:47 (3089): wrapper (7.7.26015): starting
03:57:47 (3089): wrapper: running run_atlas (--nthreads 12)
[2026-01-12 03:57:47] Arguments: --nthreads 12
[2026-01-12 03:57:47] Threads: 12
[2026-01-12 03:57:47] Checking for CVMFS
[2026-01-12 03:57:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 03:57:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 03:57:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 03:57:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 03:57:48] 2.11.2.0 3165 140772 100416 155045 1 1 18988689 20275201 1 130560 0 51598767 99.889 8250512 40847 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 03:57:48] CVMFS is ok
[2026-01-12 03:57:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 03:57:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 03:57:48] Further information can be found at the LHC@home message board.
[2026-01-12 03:57:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 03:57:48] Checking for apptainer binary...
[2026-01-12 03:57:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 03:57:48] Running /usr/bin/apptainer --version
[2026-01-12 03:57:48] apptainer version 1.3.2-1.el7
[2026-01-12 03:57:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 03:57:50] c-115-40.aglt2.org
[2026-01-12 03:57:50] apptainer works
[2026-01-12 03:57:50] Set ATHENA_PROC_NUMBER=12
[2026-01-12 03:57:50] Set ATHENA_CORE_NUMBER=12
[2026-01-12 03:57:50] Starting ATLAS job with PandaID=6966853020
[2026-01-12 03:57:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 12:04:01]  *** The last 200 lines of the pilot log: ***
[2026-01-12 12:04:01] 2026-01-12 17:03:32,694 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 12:04:01] 2026-01-12 17:03:34,130 | INFO     | time since job start (29128s) is within the limit (349056.0s)
[2026-01-12 12:04:01] 2026-01-12 17:03:35,209 | INFO     | monitor loop #2176: job 0:6966853020 is in state 'finished'
[2026-01-12 12:04:01] 2026-01-12 17:03:35,209 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 12:04:01] 2026-01-12 17:03:36,135 | INFO     | time since job start (29130s) is within the limit (349056.0s)
[2026-01-12 12:04:01] 2026-01-12 17:03:36,205 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-12 12:04:01] 2026-01-12 17:03:36,208 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2026-01-12 12:04:01] 2026-01-12 17:03:36,211 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6966853020/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 12:04:01] 2026-01-12 17:03:36,212 | INFO     | extracted standard info from prmon json
[2026-01-12 12:04:01] 2026-01-12 17:03:36,212 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 12:04:01] 2026-01-12 17:03:36,212 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 12:04:01] 2026-01-12 17:03:36,219 | INFO     | fitting pss+swap vs Time
[2026-01-12 12:04:01] 2026-01-12 17:03:36,220 | INFO     | sum of square deviations: 33653995793.915997
[2026-01-12 12:04:01] 2026-01-12 17:03:36,224 | INFO     | sum of deviations: 552475209113.9191
[2026-01-12 12:04:01] 2026-01-12 17:03:36,224 | INFO     | mean x: 1768222840.1656184
[2026-01-12 12:04:01] 2026-01-12 17:03:36,224 | INFO     | mean y: 4566663.507337526
[2026-01-12 12:04:01] 2026-01-12 17:03:36,225 | INFO     | intersect: -29023168686.63236
[2026-01-12 12:04:01] 2026-01-12 17:03:36,225 | INFO     | chi2: 6.336132290862665
[2026-01-12 12:04:01] 2026-01-12 17:03:36,226 | INFO     | sum of square deviations: 32606781648.777546
[2026-01-12 12:04:01] 2026-01-12 17:03:36,230 | INFO     | sum of deviations: 815293294710.204
[2026-01-12 12:04:01] 2026-01-12 17:03:36,230 | INFO     | mean x: 1768222687.667373
[2026-01-12 12:04:01] 2026-01-12 17:03:36,230 | INFO     | mean y: 4604919.389830508
[2026-01-12 12:04:01] 2026-01-12 17:03:36,230 | INFO     | intersect: -44207673260.59154
[2026-01-12 12:04:01] 2026-01-12 17:03:36,231 | INFO     | chi2: 2.9322500384946446
[2026-01-12 12:04:01] 2026-01-12 17:03:36,231 | INFO     | current chi2=2.9322500384946446 (change=53.72176741443291 %)
[2026-01-12 12:04:01] 2026-01-12 17:03:36,231 | INFO     | sum of square deviations: 31581492732.972282
[2026-01-12 12:04:01] 2026-01-12 17:03:36,236 | INFO     | sum of deviations: 868646741876.3754
[2026-01-12 12:04:01] 2026-01-12 17:03:36,237 | INFO     | mean x: 1768222535.1670237
[2026-01-12 12:04:01] 2026-01-12 17:03:36,237 | INFO     | mean y: 4612799.751605996
[2026-01-12 12:04:01] 2026-01-12 17:03:36,237 | INFO     | intersect: -48630223972.28033
[2026-01-12 12:04:01] 2026-01-12 17:03:36,237 | INFO     | chi2: 2.532936067979228
[2026-01-12 12:04:01] 2026-01-12 17:03:36,237 | INFO     | current chi2=2.532936067979228 (change=13.618005465878213 %)
[2026-01-12 12:04:01] 2026-01-12 17:03:36,238 | INFO     | right removable region: 466
[2026-01-12 12:04:01] 2026-01-12 17:03:36,238 | INFO     | sum of square deviations: 32606733458.77754
[2026-01-12 12:04:01] 2026-01-12 17:03:36,243 | INFO     | sum of deviations: 336888021657.9792
[2026-01-12 12:04:01] 2026-01-12 17:03:36,244 | INFO     | mean x: 1768222992.667373
[2026-01-12 12:04:01] 2026-01-12 17:03:36,244 | INFO     | mean y: 4597981.063559322
[2026-01-12 12:04:01] 2026-01-12 17:03:36,244 | INFO     | intersect: -18264424477.225822
[2026-01-12 12:04:01] 2026-01-12 17:03:36,244 | INFO     | chi2: 3.94587043751769
[2026-01-12 12:04:01] 2026-01-12 17:03:36,244 | INFO     | current chi2=3.94587043751769 (change=37.72430472753814 %)
[2026-01-12 12:04:01] 2026-01-12 17:03:36,245 | INFO     | sum of square deviations: 31581425023.63594
[2026-01-12 12:04:01] 2026-01-12 17:03:36,250 | INFO     | sum of deviations: 302335320540.46893
[2026-01-12 12:04:01] 2026-01-12 17:03:36,250 | INFO     | mean x: 1768223145.169165
[2026-01-12 12:04:01] 2026-01-12 17:03:36,250 | INFO     | mean y: 4603113.740899358
[2026-01-12 12:04:01] 2026-01-12 17:03:36,250 | INFO     | intersect: -16922951959.587706
[2026-01-12 12:04:01] 2026-01-12 17:03:36,251 | INFO     | chi2: 3.92564540522326
[2026-01-12 12:04:01] 2026-01-12 17:03:36,251 | INFO     | current chi2=3.92564540522326 (change=0.5125619965148454 %)
[2026-01-12 12:04:01] 2026-01-12 17:03:36,251 | INFO     | left removable region: 20
[2026-01-12 12:04:01] 2026-01-12 17:03:36,252 | INFO     | sum of square deviations: 27509696219.858734
[2026-01-12 12:04:01] 2026-01-12 17:03:36,255 | INFO     | sum of deviations: 556610793654.263
[2026-01-12 12:04:01] 2026-01-12 17:03:36,256 | INFO     | mean x: 1768223114.674888
[2026-01-12 12:04:01] 2026-01-12 17:03:36,256 | INFO     | mean y: 4659934.746636772
[2026-01-12 12:04:01] 2026-01-12 17:03:36,256 | INFO     | intersect: -35772255351.8176
[2026-01-12 12:04:01] 2026-01-12 17:03:36,256 | INFO     | chi2: 0.05931217022298159
[2026-01-12 12:04:01] 2026-01-12 17:03:36,256 | INFO     | current memory leak: 20.23 B/s (using 446 data points, chi2=0.06)
[2026-01-12 12:04:01] 2026-01-12 17:03:36,257 | INFO     | could have reported an average CPU frequency of 2605 MHz (20 samples)
[2026-01-12 12:04:01] 2026-01-12 17:03:36,257 | INFO     | ..............................
[2026-01-12 12:04:01] 2026-01-12 17:03:36,257 | INFO     | . Timing measurements:
[2026-01-12 12:04:01] 2026-01-12 17:03:36,257 | INFO     | . get job = 0 s
[2026-01-12 12:04:01] 2026-01-12 17:03:36,257 | INFO     | . initial setup = 2 s
[2026-01-12 12:04:01] 2026-01-12 17:03:36,257 | INFO     | . payload setup = 14 s
[2026-01-12 12:04:01] 2026-01-12 17:03:36,257 | INFO     | . stage-in = 0 s
[2026-01-12 12:04:01] 2026-01-12 17:03:36,257 | INFO     | . payload execution = 29084 s
[2026-01-12 12:04:01] 2026-01-12 17:03:36,258 | INFO     | . stage-out = 3 s
[2026-01-12 12:04:01] 2026-01-12 17:03:36,258 | INFO     | . log creation = 0 s
[2026-01-12 12:04:01] 2026-01-12 17:03:36,258 | INFO     | ..............................
[2026-01-12 12:04:01] 2026-01-12 17:03:36,332 | INFO     | 
[2026-01-12 12:04:01] 2026-01-12 17:03:36,333 | INFO     | job summary report
[2026-01-12 12:04:01] 2026-01-12 17:03:36,333 | INFO     | --------------------------------------------------
[2026-01-12 12:04:01] 2026-01-12 17:03:36,333 | INFO     | PanDA job id: 6966853020
[2026-01-12 12:04:01] 2026-01-12 17:03:36,333 | INFO     | task id: 48187943
[2026-01-12 12:04:01] 2026-01-12 17:03:36,333 | INFO     | errors: (none)
[2026-01-12 12:04:01] 2026-01-12 17:03:36,333 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 12:04:01] 2026-01-12 17:03:36,333 | INFO     | pilot state: finished 
[2026-01-12 12:04:01] 2026-01-12 17:03:36,334 | INFO     | transexitcode: 0
[2026-01-12 12:04:01] 2026-01-12 17:03:36,334 | INFO     | exeerrorcode: 0
[2026-01-12 12:04:01] 2026-01-12 17:03:36,334 | INFO     | exeerrordiag: 
[2026-01-12 12:04:01] 2026-01-12 17:03:36,334 | INFO     | exitcode: 0
[2026-01-12 12:04:01] 2026-01-12 17:03:36,334 | INFO     | exitmsg: OK
[2026-01-12 12:04:01] 2026-01-12 17:03:36,334 | INFO     | cpuconsumptiontime: 337122 s
[2026-01-12 12:04:01] 2026-01-12 17:03:36,334 | INFO     | nevents: 2050
[2026-01-12 12:04:01] 2026-01-12 17:03:36,335 | INFO     | neventsw: 0
[2026-01-12 12:04:01] 2026-01-12 17:03:36,335 | INFO     | pid: 14320
[2026-01-12 12:04:01] 2026-01-12 17:03:36,335 | INFO     | pgrp: 14320
[2026-01-12 12:04:01] 2026-01-12 17:03:36,335 | INFO     | corecount: 12
[2026-01-12 12:04:01] 2026-01-12 17:03:36,335 | INFO     | event service: False
[2026-01-12 12:04:01] 2026-01-12 17:03:36,335 | INFO     | sizes: {0: 2284450, 1: 2284649, 6: 2284911, 11: 2284939, 29102: 2342698, 29107: 2351696, 29108: 2351880, 29114: 2352126}
[2026-01-12 12:04:01] 2026-01-12 17:03:36,335 | INFO     | --------------------------------------------------
[2026-01-12 12:04:01] 2026-01-12 17:03:36,336 | INFO     | 
[2026-01-12 12:04:01] 2026-01-12 17:03:36,336 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-12 12:04:01] 2026-01-12 17:03:36,360 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,361 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,361 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,361 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,361 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,361 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,361 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,362 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,362 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,362 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,362 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,362 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,362 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,363 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,363 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,363 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,363 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,363 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 12:04:01] 2026-01-12 17:03:36,363 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,364 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 12:04:01] 2026-01-12 17:03:36,364 | INFO     | job 6966853020 has completed (purged errors)
[2026-01-12 12:04:01] 2026-01-12 17:03:36,364 | INFO     | overall cleanup function is called
[2026-01-12 12:04:01] 2026-01-12 17:03:37,382 | INFO     | --- collectZombieJob: --- 10, [14320]
[2026-01-12 12:04:01] 2026-01-12 17:03:37,382 | INFO     | zombie collector waiting for pid 14320
[2026-01-12 12:04:01] 2026-01-12 17:03:37,382 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 12:04:01] 2026-01-12 17:03:37,382 | INFO     | collected zombie processes
[2026-01-12 12:04:01] 2026-01-12 17:03:37,382 | INFO     | will attempt to kill all subprocesses of pid=14320
[2026-01-12 12:04:01] 2026-01-12 17:03:37,468 | INFO     | process IDs to be killed: [14320] (in reverse order)
[2026-01-12 12:04:01] 2026-01-12 17:03:37,519 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 12:04:01] 2026-01-12 17:03:37,519 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 12:04:01] 2026-01-12 17:03:37,523 | INFO     | did not find any defunct processes belonging to 14320
[2026-01-12 12:04:01] 2026-01-12 17:03:37,525 | INFO     | did not find any defunct processes belonging to 14320
[2026-01-12 12:04:01] 2026-01-12 17:03:37,525 | INFO     | ready for new job
[2026-01-12 12:04:01] 2026-01-12 17:03:37,525 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 12:04:01] 2026-01-12 17:03:37,527 | INFO     | ***************************************
[2026-01-12 12:04:01] 2026-01-12 17:03:37,528 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 12:04:01] 2026-01-12 17:03:37,528 | INFO     | ***************************************
[2026-01-12 12:04:01] 2026-01-12 17:03:37,528 | INFO     | 
[2026-01-12 12:04:01] 2026-01-12 17:03:37,528 | INFO     | architecture information:
[2026-01-12 12:04:01] 2026-01-12 17:03:37,529 | INFO     | executing command: cat /etc/os-release
[2026-01-12 12:04:01] 2026-01-12 17:03:37,543 | INFO     | cat /etc/os-release:
[2026-01-12 12:04:01] NAME="CentOS Linux"
[2026-01-12 12:04:01] VERSION="7 (Core)"
[2026-01-12 12:04:01] ID="centos"
[2026-01-12 12:04:01] ID_LIKE="rhel fedora"
[2026-01-12 12:04:01] VERSION_ID="7"
[2026-01-12 12:04:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 12:04:01] ANSI_COLOR="0;31"
[2026-01-12 12:04:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 12:04:01] HOME_URL="https://www.centos.org/"
[2026-01-12 12:04:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 12:04:01] 
[2026-01-12 12:04:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 12:04:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 12:04:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 12:04:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 12:04:01] 
[2026-01-12 12:04:01] 2026-01-12 17:03:37,544 | INFO     | ***************************************
[2026-01-12 12:04:01] 2026-01-12 17:03:38,047 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-12 12:04:01] 2026-01-12 17:03:38,063 | INFO     | sufficient remaining disk space (17474519040 B)
[2026-01-12 12:04:01] 2026-01-12 17:03:38,064 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 12:04:01] 2026-01-12 17:03:38,064 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 12:04:01] 2026-01-12 17:03:38,064 | INFO     | update_server=False
[2026-01-12 12:04:01] 2026-01-12 17:03:38,064 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 12:04:01] 2026-01-12 17:03:38,065 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 12:04:01] 2026-01-12 17:03:38,065 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 12:04:01] 2026-01-12 17:03:38,066 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-12 12:04:01] 2026-01-12 17:03:38,066 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 12:04:01] 2026-01-12 17:03:38,066 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 12:04:01] 2026-01-12 17:03:38,066 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 12:04:01] 2026-01-12 17:03:38,705 | INFO     | all data control threads have been joined
[2026-01-12 12:04:01] 2026-01-12 17:03:38,717 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 12:04:01] 2026-01-12 17:03:38,717 | INFO     | aborting loop
[2026-01-12 12:04:01] 2026-01-12 17:03:38,794 | INFO     | all payload control threads have been joined
[2026-01-12 12:04:01] 2026-01-12 17:03:39,014 | INFO     | all job control threads have been joined
[2026-01-12 12:04:01] 2026-01-12 17:03:39,070 | INFO     | [job] retrieve thread has finished
[2026-01-12 12:04:01] 2026-01-12 17:03:39,071 | INFO     | [job] queue monitor thread has finished
[2026-01-12 12:04:01] 2026-01-12 17:03:39,711 | INFO     | [data] control thread has finished
[2026-01-12 12:04:01] 2026-01-12 17:03:39,723 | INFO     | [job] job monitor thread has finished
[2026-01-12 12:04:01] 2026-01-12 17:03:39,782 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 12:04:01] 2026-01-12 17:03:39,799 | INFO     | [payload] control thread has finished
[2026-01-12 12:04:01] 2026-01-12 17:03:39,836 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 12:04:01] 2026-01-12 17:03:39,946 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 12:04:01] 2026-01-12 17:03:40,021 | INFO     | [job] control thread has finished
[2026-01-12 12:04:01] 2026-01-12 17:03:40,071 | INFO     | [data] copytool_out thread has finished
[2026-01-12 12:04:01] 2026-01-12 17:03:40,271 | INFO     | [payload] validate_post thread has finished
[2026-01-12 12:04:01] 2026-01-12 17:03:40,276 | INFO     | [payload] failed_post thread has finished
[2026-01-12 12:04:01] 2026-01-12 17:03:40,406 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 12:04:01] 2026-01-12 17:03:40,474 | INFO     | [data] copytool_in thread has finished
[2026-01-12 12:04:01] 2026-01-12 17:03:40,488 | INFO     | [job] validate thread has finished
[2026-01-12 12:04:01] 2026-01-12 17:03:41,389 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 12:04:01] 2026-01-12 17:03:45,395 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 12:04:01] 2026-01-12 17:03:54,136 | INFO     | [monitor] cgroup control has ended
[2026-01-12 12:04:01] 2026-01-12 17:03:55,739 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139670756476736)>', '<ExcThread(monitor, started 139670172194560)>']
[2026-01-12 12:04:01] 2026-01-12 17:03:56,158 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 12:04:01] 2026-01-12 17:03:56,159 | INFO     | [monitor] control thread has ended
[2026-01-12 12:04:01] 2026-01-12 17:04:00,756 | INFO     | all workflow threads have been joined
[2026-01-12 12:04:01] 2026-01-12 17:04:00,756 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 12:04:01] 2026-01-12 17:04:00,757 | INFO     | traces error code: 0
[2026-01-12 12:04:01] 2026-01-12 17:04:00,757 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 12:04:01] 2026-01-12 17:04:00,855 [wrapper] ==== pilot stdout END ====
[2026-01-12 12:04:01] 2026-01-12 17:04:00,859 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 12:04:01] 2026-01-12 17:04:00,863 [wrapper] pilotpid: 7214
[2026-01-12 12:04:01] 2026-01-12 17:04:00,867 [wrapper] Pilot exit status: 0
[2026-01-12 12:04:01] 2026-01-12 17:04:00,880 [wrapper] pandaids: 6966853020
[2026-01-12 12:04:01] 2026-01-12 17:04:00,926 [wrapper] cleanup supervisor_pilot  7875 7215
[2026-01-12 12:04:01] 2026-01-12 17:04:00,930 [wrapper] Test setup, not cleaning
[2026-01-12 12:04:01] 2026-01-12 17:04:00,934 [wrapper] apfmon messages muted
[2026-01-12 12:04:01] 2026-01-12 17:04:00,938 [wrapper] ==== wrapper stdout END ====
[2026-01-12 12:04:01] 2026-01-12 17:04:00,941 [wrapper] ==== wrapper stderr END ====
[2026-01-12 12:04:01]  *** Error codes and diagnostics ***
[2026-01-12 12:04:01]     "exeErrorCode": 0,
[2026-01-12 12:04:01]     "exeErrorDiag": "",
[2026-01-12 12:04:01]     "pilotErrorCode": 0,
[2026-01-12 12:04:01]     "pilotErrorDiag": "",
[2026-01-12 12:04:01]  *** Listing of results directory ***
[2026-01-12 12:04:01] total 1502088
[2026-01-12 12:04:01] -rw-r--r-- 1 boincer umatlas     579449 Jan 12 03:50 pilot3.tar.gz
[2026-01-12 12:04:01] -rwx------ 1 boincer umatlas      36322 Jan 12 03:51 runpilot2-wrapper.sh
[2026-01-12 12:04:01] -rw-r--r-- 1 boincer umatlas       5112 Jan 12 03:51 queuedata.json
[2026-01-12 12:04:01] -rw-r--r-- 1 boincer umatlas        100 Jan 12 03:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 12:04:01] -rwxr-xr-x 1 boincer umatlas       7986 Jan 12 03:57 run_atlas
[2026-01-12 12:04:01] -rw-r--r-- 1 boincer umatlas        105 Jan 12 03:57 job.xml
[2026-01-12 12:04:01] -rw-r--r-- 2 boincer umatlas  321780136 Jan 12 03:57 EVNT.48118027._000112.pool.root.1
[2026-01-12 12:04:01] -rw-r--r-- 2 boincer umatlas      15847 Jan 12 03:57 start_atlas.sh
[2026-01-12 12:04:01] drwxrwx--x 2 boincer umatlas       4096 Jan 12 03:57 shared
[2026-01-12 12:04:01] -rw-r--r-- 2 boincer umatlas     592605 Jan 12 03:57 input.tar.gz
[2026-01-12 12:04:01] -rw-r--r-- 1 boincer umatlas          0 Jan 12 03:57 boinc_lockfile
[2026-01-12 12:04:01] -rw-r--r-- 1 boincer umatlas       2896 Jan 12 03:57 pandaJob.out
[2026-01-12 12:04:01] -rw------- 1 boincer umatlas         57 Jan 12 03:57 setup.sh.local
[2026-01-12 12:04:01] -rw------- 1 boincer umatlas     987688 Jan 12 03:58 agis_schedconf.cvmfs.json
[2026-01-12 12:04:01] drwx------ 5 boincer umatlas       4096 Jan 12 03:58 pilot3
[2026-01-12 12:04:01] -rw-r--r-- 1 boincer umatlas        532 Jan 12 11:55 boinc_task_state.xml
[2026-01-12 12:04:01] -rw------- 1 boincer umatlas 1199123149 Jan 12 12:02 HITS.48187943._000543.pool.root.1
[2026-01-12 12:04:01] -rw------- 1 boincer umatlas         95 Jan 12 12:03 pilot_heartbeat.json
[2026-01-12 12:04:01] -rw-r--r-- 1 boincer umatlas       5956 Jan 12 12:03 init_data.xml
[2026-01-12 12:04:01] -rw------- 1 boincer umatlas       1061 Jan 12 12:03 memory_monitor_summary.json
[2026-01-12 12:04:01] -rw------- 1 boincer umatlas    1516240 Jan 12 12:03 agis_ddmendpoints.agis.ALL.json
[2026-01-12 12:04:01] -rw------- 1 boincer umatlas    2582364 Jan 12 12:03 log.48187943._000543.job.log.tgz.1
[2026-01-12 12:04:01] -rw------- 1 boincer umatlas      27573 Jan 12 12:03 heartbeat.json
[2026-01-12 12:04:01] -rw-r--r-- 1 boincer umatlas       8192 Jan 12 12:03 boinc_mmap_file
[2026-01-12 12:04:01] -rw-r--r-- 1 boincer umatlas         29 Jan 12 12:03 wrapper_checkpoint.txt
[2026-01-12 12:04:01] -rw------- 1 boincer umatlas       4552 Jan 12 12:04 pilotlog.txt
[2026-01-12 12:04:01] -rw------- 1 boincer umatlas    4060610 Jan 12 12:04 log.48187943._000543.job.log.1
[2026-01-12 12:04:01] -rw------- 1 boincer umatlas        353 Jan 12 12:04 output.list
[2026-01-12 12:04:01] -rw-r--r-- 1 boincer umatlas        620 Jan 12 12:04 runtime_log
[2026-01-12 12:04:01] -rw------- 1 boincer umatlas    6676480 Jan 12 12:04 result.tar.gz
[2026-01-12 12:04:01] -rw-r--r-- 1 boincer umatlas       9345 Jan 12 12:04 runtime_log.err
[2026-01-12 12:04:01] -rw------- 1 boincer umatlas        670 Jan 12 12:04 f3mMDmvoSz8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmykhKDmDppSFm.diag
[2026-01-12 12:04:01] -rw-r--r-- 1 boincer umatlas      21142 Jan 12 12:04 stderr.txt
[2026-01-12 12:04:01] HITS file was successfully produced:
[2026-01-12 12:04:01] -rw------- 1 boincer umatlas 1199123149 Jan 12 12:02 shared/HITS.pool.root.1
[2026-01-12 12:04:01]  *** Contents of shared directory: ***
[2026-01-12 12:04:01] total 1492380
[2026-01-12 12:04:01] -rw-r--r-- 2 boincer umatlas  321780136 Jan 12 03:57 ATLAS.root_0
[2026-01-12 12:04:01] -rw-r--r-- 2 boincer umatlas      15847 Jan 12 03:57 start_atlas.sh
[2026-01-12 12:04:01] -rw-r--r-- 2 boincer umatlas     592605 Jan 12 03:57 input.tar.gz
[2026-01-12 12:04:01] -rw------- 1 boincer umatlas 1199123149 Jan 12 12:02 HITS.pool.root.1
[2026-01-12 12:04:01] -rw------- 1 boincer umatlas    6676480 Jan 12 12:04 result.tar.gz
12:04:02 (3089): run_atlas exited; CPU time 331632.577201
12:04:02 (3089): called boinc_finish(0)

</stderr_txt>
]]>

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