Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:55:59 (71404): wrapper (7.7.26015): starting
03:55:59 (71404): wrapper: running run_atlas (--nthreads 9)
[2026-01-12 03:55:59] Arguments: --nthreads 9
[2026-01-12 03:55:59] Threads: 9
[2026-01-12 03:55:59] Checking for CVMFS
[2026-01-12 03:55:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 03:55:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 03:55:59] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 03:55:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 03:55:59] 2.13.3.0 7038 26985 161536 155045 0 185 34242837 40960001 14696 16776704 0 42255782 99.757 28690761 45662 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 03:55:59] CVMFS is ok
[2026-01-12 03:55:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 03:55:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 03:55:59] Further information can be found at the LHC@home message board.
[2026-01-12 03:55:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 03:55:59] Checking for apptainer binary...
[2026-01-12 03:55:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 03:55:59] Running /usr/bin/apptainer --version
[2026-01-12 03:55:59] apptainer version 1.4.5-2.el9
[2026-01-12 03:55:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 03:56:00] c-212-4.aglt2.org
[2026-01-12 03:56:00] apptainer works
[2026-01-12 03:56:00] Set ATHENA_PROC_NUMBER=9
[2026-01-12 03:56:00] Set ATHENA_CORE_NUMBER=9
[2026-01-12 03:56:00] Starting ATLAS job with PandaID=6966849812
[2026-01-12 03:56:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 04:23:53]  *** The last 200 lines of the pilot log: ***
[2026-01-13 04:23:53] 2026-01-13 09:23:03,715 | INFO     | executing command: lscpu
[2026-01-13 04:23:53] 2026-01-13 09:23:03,780 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-13 04:23:53] 2026-01-13 09:23:05,071 | INFO     | time since job start (88013s) is within the limit (349056.0s)
[2026-01-13 04:23:53] 2026-01-13 09:23:05,928 | INFO     | monitor loop #5659: job 0:6966849812 is in state 'finished'
[2026-01-13 04:23:53] 2026-01-13 09:23:05,928 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 04:23:53] 2026-01-13 09:23:07,077 | INFO     | time since job start (88015s) is within the limit (349056.0s)
[2026-01-13 04:23:53] 2026-01-13 09:23:08,436 | INFO     | monitor loop #5660: job 0:6966849812 is in state 'finished'
[2026-01-13 04:23:53] 2026-01-13 09:23:08,436 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 04:23:53] 2026-01-13 09:23:09,105 | INFO     | time since job start (88017s) is within the limit (349056.0s)
[2026-01-13 04:23:53] 2026-01-13 09:23:10,941 | INFO     | monitor loop #5661: job 0:6966849812 is in state 'finished'
[2026-01-13 04:23:53] 2026-01-13 09:23:10,941 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 04:23:53] 2026-01-13 09:23:11,115 | INFO     | time since job start (88019s) is within the limit (349056.0s)
[2026-01-13 04:23:53] 2026-01-13 09:23:13,122 | INFO     | time since job start (88021s) is within the limit (349056.0s)
[2026-01-13 04:23:53] 2026-01-13 09:23:13,450 | INFO     | monitor loop #5662: job 0:6966849812 is in state 'finished'
[2026-01-13 04:23:53] 2026-01-13 09:23:13,450 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 04:23:53] 2026-01-13 09:23:15,132 | INFO     | time since job start (88023s) is within the limit (349056.0s)
[2026-01-13 04:23:53] 2026-01-13 09:23:15,744 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-13 04:23:53] 2026-01-13 09:23:15,752 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3203.603385416666
[2026-01-13 04:23:53] 2026-01-13 09:23:15,782 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6966849812/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 04:23:53] 2026-01-13 09:23:15,783 | INFO     | extracted standard info from prmon json
[2026-01-13 04:23:53] 2026-01-13 09:23:15,783 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 04:23:53] 2026-01-13 09:23:15,783 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 04:23:53] 2026-01-13 09:23:15,806 | INFO     | fitting pss+swap vs Time
[2026-01-13 04:23:53] 2026-01-13 09:23:15,807 | INFO     | sum of square deviations: 929789513229.8568
[2026-01-13 04:23:53] 2026-01-13 09:23:15,871 | INFO     | sum of deviations: 3302060574302.085
[2026-01-13 04:23:53] 2026-01-13 09:23:15,872 | INFO     | mean x: 1768252162.8578362
[2026-01-13 04:23:53] 2026-01-13 09:23:15,872 | INFO     | mean y: 3585546.771151179
[2026-01-13 04:23:53] 2026-01-13 09:23:15,872 | INFO     | intersect: -6276196779.568982
[2026-01-13 04:23:53] 2026-01-13 09:23:15,873 | INFO     | chi2: 16.57523074901827
[2026-01-13 04:23:53] 2026-01-13 09:23:15,875 | INFO     | sum of square deviations: 920152406699.4635
[2026-01-13 04:23:53] 2026-01-13 09:23:15,959 | INFO     | sum of deviations: 3953908403271.8306
[2026-01-13 04:23:53] 2026-01-13 09:23:15,959 | INFO     | mean x: 1768252010.3660405
[2026-01-13 04:23:53] 2026-01-13 09:23:15,959 | INFO     | mean y: 3595859.7341684066
[2026-01-13 04:23:53] 2026-01-13 09:23:15,959 | INFO     | intersect: -7594608994.140798
[2026-01-13 04:23:53] 2026-01-13 09:23:15,962 | INFO     | chi2: 12.801072565184578
[2026-01-13 04:23:53] 2026-01-13 09:23:15,963 | INFO     | current chi2=12.801072565184578 (change=22.76986813023542 %)
[2026-01-13 04:23:53] 2026-01-13 09:23:15,963 | INFO     | right removable region: 1436
[2026-01-13 04:23:53] 2026-01-13 09:23:15,964 | INFO     | sum of square deviations: 920150420421.1943
[2026-01-13 04:23:53] 2026-01-13 09:23:15,983 | INFO     | monitor loop #5663: job 0:6966849812 is in state 'finished'
[2026-01-13 04:23:53] 2026-01-13 09:23:15,993 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 04:23:53] 2026-01-13 09:23:16,006 | INFO     | sum of deviations: 2799271878941.5063
[2026-01-13 04:23:53] 2026-01-13 09:23:16,006 | INFO     | mean x: 1768252315.3653445
[2026-01-13 04:23:53] 2026-01-13 09:23:16,006 | INFO     | mean y: 3593494.8295059153
[2026-01-13 04:23:53] 2026-01-13 09:23:16,007 | INFO     | intersect: -5375765000.719148
[2026-01-13 04:23:53] 2026-01-13 09:23:16,008 | INFO     | chi2: 14.278651796930976
[2026-01-13 04:23:53] 2026-01-13 09:23:16,008 | INFO     | current chi2=14.278651796930976 (change=13.855487062967844 %)
[2026-01-13 04:23:53] 2026-01-13 09:23:16,008 | INFO     | left removable region: 10
[2026-01-13 04:23:53] 2026-01-13 09:23:16,009 | INFO     | sum of square deviations: 899182267234.0121
[2026-01-13 04:23:53] 2026-01-13 09:23:16,042 | INFO     | sum of deviations: 3433177105306.8745
[2026-01-13 04:23:53] 2026-01-13 09:23:16,042 | INFO     | mean x: 1768252284.8786817
[2026-01-13 04:23:53] 2026-01-13 09:23:16,042 | INFO     | mean y: 3607963.1900420757
[2026-01-13 04:23:53] 2026-01-13 09:23:16,042 | INFO     | intersect: -6747774356.132491
[2026-01-13 04:23:53] 2026-01-13 09:23:16,044 | INFO     | chi2: 9.783274689153668
[2026-01-13 04:23:53] 2026-01-13 09:23:16,044 | INFO     | current memory leak: 3.82 B/s (using 1426 data points, chi2=9.78)
[2026-01-13 04:23:53] 2026-01-13 09:23:16,045 | INFO     | could have reported an average CPU frequency of 3213 MHz (52 samples)
[2026-01-13 04:23:53] 2026-01-13 09:23:16,045 | INFO     | ..............................
[2026-01-13 04:23:53] 2026-01-13 09:23:16,045 | INFO     | . Timing measurements:
[2026-01-13 04:23:53] 2026-01-13 09:23:16,045 | INFO     | . get job = 0 s
[2026-01-13 04:23:53] 2026-01-13 09:23:16,045 | INFO     | . initial setup = 2 s
[2026-01-13 04:23:53] 2026-01-13 09:23:16,045 | INFO     | . payload setup = 12 s
[2026-01-13 04:23:53] 2026-01-13 09:23:16,046 | INFO     | . stage-in = 0 s
[2026-01-13 04:23:53] 2026-01-13 09:23:16,046 | INFO     | . payload execution = 87969 s
[2026-01-13 04:23:53] 2026-01-13 09:23:16,046 | INFO     | . stage-out = 4 s
[2026-01-13 04:23:53] 2026-01-13 09:23:16,046 | INFO     | . log creation = 1 s
[2026-01-13 04:23:53] 2026-01-13 09:23:16,046 | INFO     | ..............................
[2026-01-13 04:23:53] 2026-01-13 09:23:16,431 | INFO     | 
[2026-01-13 04:23:53] 2026-01-13 09:23:16,431 | INFO     | job summary report
[2026-01-13 04:23:53] 2026-01-13 09:23:16,431 | INFO     | --------------------------------------------------
[2026-01-13 04:23:53] 2026-01-13 09:23:16,432 | INFO     | PanDA job id: 6966849812
[2026-01-13 04:23:53] 2026-01-13 09:23:16,432 | INFO     | task id: 48187943
[2026-01-13 04:23:53] 2026-01-13 09:23:16,432 | INFO     | errors: (none)
[2026-01-13 04:23:53] 2026-01-13 09:23:16,432 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 04:23:53] 2026-01-13 09:23:16,432 | INFO     | pilot state: finished 
[2026-01-13 04:23:53] 2026-01-13 09:23:16,432 | INFO     | transexitcode: 0
[2026-01-13 04:23:53] 2026-01-13 09:23:16,432 | INFO     | exeerrorcode: 0
[2026-01-13 04:23:53] 2026-01-13 09:23:16,432 | INFO     | exeerrordiag: 
[2026-01-13 04:23:53] 2026-01-13 09:23:16,432 | INFO     | exitcode: 0
[2026-01-13 04:23:53] 2026-01-13 09:23:16,432 | INFO     | exitmsg: OK
[2026-01-13 04:23:53] 2026-01-13 09:23:16,432 | INFO     | cpuconsumptiontime: 239762 s
[2026-01-13 04:23:53] 2026-01-13 09:23:16,432 | INFO     | nevents: 2050
[2026-01-13 04:23:53] 2026-01-13 09:23:16,433 | INFO     | neventsw: 0
[2026-01-13 04:23:53] 2026-01-13 09:23:16,433 | INFO     | pid: 94662
[2026-01-13 04:23:53] 2026-01-13 09:23:16,433 | INFO     | pgrp: 94662
[2026-01-13 04:23:53] 2026-01-13 09:23:16,433 | INFO     | corecount: 9
[2026-01-13 04:23:53] 2026-01-13 09:23:16,433 | INFO     | event service: False
[2026-01-13 04:23:53] 2026-01-13 09:23:16,433 | INFO     | sizes: {0: 2284621, 5: 2284883, 11: 2284939, 87986: 2372059, 87991: 2381113, 88006: 2381303}
[2026-01-13 04:23:53] 2026-01-13 09:23:16,433 | INFO     | --------------------------------------------------
[2026-01-13 04:23:53] 2026-01-13 09:23:16,433 | INFO     | 
[2026-01-13 04:23:53] 2026-01-13 09:23:16,433 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-13 04:23:53] 2026-01-13 09:23:16,483 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,484 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,484 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,484 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,484 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,484 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,484 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,484 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,484 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,485 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,485 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,485 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,485 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,485 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,485 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,485 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,485 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 04:23:53] 2026-01-13 09:23:16,485 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,485 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 04:23:53] 2026-01-13 09:23:16,486 | INFO     | job 6966849812 has completed (purged errors)
[2026-01-13 04:23:53] 2026-01-13 09:23:16,486 | INFO     | overall cleanup function is called
[2026-01-13 04:23:53] 2026-01-13 09:23:17,521 | INFO     | --- collectZombieJob: --- 10, [94662]
[2026-01-13 04:23:53] 2026-01-13 09:23:17,521 | INFO     | zombie collector waiting for pid 94662
[2026-01-13 04:23:53] 2026-01-13 09:23:17,521 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 04:23:53] 2026-01-13 09:23:17,521 | INFO     | collected zombie processes
[2026-01-13 04:23:53] 2026-01-13 09:23:17,521 | INFO     | will attempt to kill all subprocesses of pid=94662
[2026-01-13 04:23:53] 2026-01-13 09:23:18,561 | INFO     | process IDs to be killed: [94662] (in reverse order)
[2026-01-13 04:23:53] 2026-01-13 09:23:18,740 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 04:23:53] 2026-01-13 09:23:18,741 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 04:23:53] 2026-01-13 09:23:18,771 | INFO     | did not find any defunct processes belonging to 94662
[2026-01-13 04:23:53] 2026-01-13 09:23:18,826 | INFO     | did not find any defunct processes belonging to 94662
[2026-01-13 04:23:53] 2026-01-13 09:23:18,827 | INFO     | ready for new job
[2026-01-13 04:23:53] 2026-01-13 09:23:18,827 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 04:23:53] 2026-01-13 09:23:18,867 | INFO     | ***************************************
[2026-01-13 04:23:53] 2026-01-13 09:23:18,867 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 04:23:53] 2026-01-13 09:23:18,867 | INFO     | ***************************************
[2026-01-13 04:23:53] 2026-01-13 09:23:18,867 | INFO     | 
[2026-01-13 04:23:53] 2026-01-13 09:23:18,880 | INFO     | architecture information:
[2026-01-13 04:23:53] 2026-01-13 09:23:18,886 | INFO     | executing command: cat /etc/os-release
[2026-01-13 04:23:53] 2026-01-13 09:23:18,976 | INFO     | cat /etc/os-release:
[2026-01-13 04:23:53] NAME="CentOS Linux"
[2026-01-13 04:23:53] VERSION="7 (Core)"
[2026-01-13 04:23:53] ID="centos"
[2026-01-13 04:23:53] ID_LIKE="rhel fedora"
[2026-01-13 04:23:53] VERSION_ID="7"
[2026-01-13 04:23:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 04:23:53] ANSI_COLOR="0;31"
[2026-01-13 04:23:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 04:23:53] HOME_URL="https://www.centos.org/"
[2026-01-13 04:23:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 04:23:53] 
[2026-01-13 04:23:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 04:23:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 04:23:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 04:23:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 04:23:53] 
[2026-01-13 04:23:53] 2026-01-13 09:23:18,976 | INFO     | ***************************************
[2026-01-13 04:23:53] 2026-01-13 09:23:19,480 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-13 04:23:53] 2026-01-13 09:23:19,520 | INFO     | sufficient remaining disk space (123121696768 B)
[2026-01-13 04:23:53] 2026-01-13 09:23:19,521 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 04:23:53] 2026-01-13 09:23:19,521 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 04:23:53] 2026-01-13 09:23:19,521 | INFO     | update_server=False
[2026-01-13 04:23:53] 2026-01-13 09:23:19,521 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 04:23:53] 2026-01-13 09:23:19,522 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 04:23:53] 2026-01-13 09:23:19,523 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 04:23:53] 2026-01-13 09:23:19,523 | INFO     | aborting loop
[2026-01-13 04:23:53] 2026-01-13 09:23:19,789 | INFO     | all data control threads have been joined
[2026-01-13 04:23:53] 2026-01-13 09:23:19,908 | INFO     | all job control threads have been joined
[2026-01-13 04:23:53] 2026-01-13 09:23:20,400 | INFO     | all payload control threads have been joined
[2026-01-13 04:23:53] 2026-01-13 09:23:20,472 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 04:23:53] 2026-01-13 09:23:20,527 | INFO     | [job] retrieve thread has finished
[2026-01-13 04:23:53] 2026-01-13 09:23:20,535 | INFO     | [job] job monitor thread has finished
[2026-01-13 04:23:53] 2026-01-13 09:23:20,624 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 04:23:53] 2026-01-13 09:23:20,795 | INFO     | [data] control thread has finished
[2026-01-13 04:23:53] 2026-01-13 09:23:20,811 | INFO     | [payload] validate_post thread has finished
[2026-01-13 04:23:53] 2026-01-13 09:23:20,914 | INFO     | [job] control thread has finished
[2026-01-13 04:23:53] 2026-01-13 09:23:20,971 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 04:23:53] 2026-01-13 09:23:21,174 | INFO     | [job] validate thread has finished
[2026-01-13 04:23:53] 2026-01-13 09:23:21,264 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 04:23:53] 2026-01-13 09:23:21,406 | INFO     | [payload] control thread has finished
[2026-01-13 04:23:53] 2026-01-13 09:23:21,530 | INFO     | [data] copytool_out thread has finished
[2026-01-13 04:23:53] 2026-01-13 09:23:21,636 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 04:23:53] 2026-01-13 09:23:21,686 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 04:23:53] 2026-01-13 09:23:21,714 | INFO     | [data] copytool_in thread has finished
[2026-01-13 04:23:53] 2026-01-13 09:23:21,983 | INFO     | [payload] failed_post thread has finished
[2026-01-13 04:23:53] 2026-01-13 09:23:22,270 | INFO     | [job] queue monitor thread has finished
[2026-01-13 04:23:53] 2026-01-13 09:23:24,481 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 04:23:53] 2026-01-13 09:23:45,674 | INFO     | [monitor] cgroup control has ended
[2026-01-13 04:23:53] 2026-01-13 09:23:47,248 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140499452999488)>', '<ExcThread(monitor, started 140498916341504)>']
[2026-01-13 04:23:53] 2026-01-13 09:23:49,124 | INFO     | PID=77026 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-13 04:23:53] 2026-01-13 09:23:49,124 | INFO     | .. there are 16 such processes running
[2026-01-13 04:23:53] 2026-01-13 09:23:49,125 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 04:23:53] 2026-01-13 09:23:49,125 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 04:23:53] 2026-01-13 09:23:49,125 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 04:23:53] 2026-01-13 09:23:49,125 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 04:23:53] 2026-01-13 09:23:49,125 | INFO     | [monitor] control thread has ended
[2026-01-13 04:23:53] 2026-01-13 09:23:52,287 | INFO     | all workflow threads have been joined
[2026-01-13 04:23:53] 2026-01-13 09:23:52,287 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 04:23:53] 2026-01-13 09:23:52,288 | INFO     | traces error code: 0
[2026-01-13 04:23:53] 2026-01-13 09:23:52,288 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 04:23:53] 2026-01-13 09:23:52,602 [wrapper] ==== pilot stdout END ====
[2026-01-13 04:23:53] 2026-01-13 09:23:52,605 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 04:23:53] 2026-01-13 09:23:52,608 [wrapper] pilotpid: 77026
[2026-01-13 04:23:53] 2026-01-13 09:23:52,610 [wrapper] Pilot exit status: 0
[2026-01-13 04:23:53] 2026-01-13 09:23:52,636 [wrapper] pandaids: 6966849812
[2026-01-13 04:23:53] 2026-01-13 09:23:52,760 [wrapper] cleanup supervisor_pilot 3186797 77027
[2026-01-13 04:23:53] 2026-01-13 09:23:52,812 [wrapper] Test setup, not cleaning
[2026-01-13 04:23:53] 2026-01-13 09:23:52,853 [wrapper] apfmon messages muted
[2026-01-13 04:23:53] 2026-01-13 09:23:52,902 [wrapper] ==== wrapper stdout END ====
[2026-01-13 04:23:53] 2026-01-13 09:23:52,965 [wrapper] ==== wrapper stderr END ====
[2026-01-13 04:23:53]  *** Error codes and diagnostics ***
[2026-01-13 04:23:53]     "exeErrorCode": 0,
[2026-01-13 04:23:53]     "exeErrorDiag": "",
[2026-01-13 04:23:53]     "pilotErrorCode": 0,
[2026-01-13 04:23:53]     "pilotErrorDiag": "",
[2026-01-13 04:23:53]  *** Listing of results directory ***
[2026-01-13 04:23:53] total 1496240
[2026-01-13 04:23:53] -rwx------. 1 boincer umatlas      36322 Jan 12 03:50 runpilot2-wrapper.sh
[2026-01-13 04:23:53] -rw-r--r--. 1 boincer umatlas       5112 Jan 12 03:50 queuedata.json
[2026-01-13 04:23:53] -rw-r--r--. 1 boincer umatlas     579449 Jan 12 03:50 pilot3.tar.gz
[2026-01-13 04:23:53] -rw-r--r--. 1 boincer umatlas        100 Jan 12 03:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 04:23:53] -rwxr-xr-x. 1 boincer umatlas       7986 Jan 12 03:55 run_atlas
[2026-01-13 04:23:53] -rw-r--r--. 1 boincer umatlas        105 Jan 12 03:55 job.xml
[2026-01-13 04:23:53] -rw-r--r--. 2 boincer umatlas  320198827 Jan 12 03:55 EVNT.48118027._000103.pool.root.1
[2026-01-13 04:23:53] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 03:55 start_atlas.sh
[2026-01-13 04:23:53] drwxrwx--x. 2 boincer umatlas       4096 Jan 12 03:55 shared
[2026-01-13 04:23:53] -rw-r--r--. 2 boincer umatlas     592601 Jan 12 03:55 input.tar.gz
[2026-01-13 04:23:53] -rw-r--r--. 1 boincer umatlas          0 Jan 12 03:55 boinc_lockfile
[2026-01-13 04:23:53] -rw-r--r--. 1 boincer umatlas       2896 Jan 12 03:56 pandaJob.out
[2026-01-13 04:23:53] -rw-------. 1 boincer umatlas         57 Jan 12 03:56 setup.sh.local
[2026-01-13 04:23:53] -rw-------. 1 boincer umatlas     987688 Jan 12 03:56 agis_schedconf.cvmfs.json
[2026-01-13 04:23:53] drwx------. 5 boincer umatlas       4096 Jan 12 03:56 pilot3
[2026-01-13 04:23:53] -rw-r--r--. 1 boincer umatlas        533 Jan 13 03:51 boinc_task_state.xml
[2026-01-13 04:23:53] -rw-------. 1 boincer umatlas 1178969499 Jan 13 04:21 HITS.48187943._000501.pool.root.1
[2026-01-13 04:23:53] -rw-r--r--. 1 boincer umatlas       6957 Jan 13 04:22 init_data.xml
[2026-01-13 04:23:53] -rw-------. 1 boincer umatlas       1047 Jan 13 04:22 memory_monitor_summary.json
[2026-01-13 04:23:53] -rw-------. 1 boincer umatlas    1516240 Jan 13 04:22 agis_ddmendpoints.agis.ALL.json
[2026-01-13 04:23:53] -rw-------. 1 boincer umatlas    2935605 Jan 13 04:23 log.48187943._000501.job.log.tgz.1
[2026-01-13 04:23:53] -rw-------. 1 boincer umatlas      27642 Jan 13 04:23 heartbeat.json
[2026-01-13 04:23:53] -rw-------. 1 boincer umatlas         95 Jan 13 04:23 pilot_heartbeat.json
[2026-01-13 04:23:53] -rw-r--r--. 1 boincer umatlas         29 Jan 13 04:23 wrapper_checkpoint.txt
[2026-01-13 04:23:53] -rw-r--r--. 1 boincer umatlas       8192 Jan 13 04:23 boinc_mmap_file
[2026-01-13 04:23:53] -rw-------. 1 boincer umatlas       4823 Jan 13 04:23 pilotlog.txt
[2026-01-13 04:23:53] -rw-------. 1 boincer umatlas   11575746 Jan 13 04:23 log.48187943._000501.job.log.1
[2026-01-13 04:23:53] -rw-------. 1 boincer umatlas        353 Jan 13 04:23 output.list
[2026-01-13 04:23:53] -rw-r--r--. 1 boincer umatlas        620 Jan 13 04:23 runtime_log
[2026-01-13 04:23:53] -rw-------. 1 boincer umatlas   14551040 Jan 13 04:23 result.tar.gz
[2026-01-13 04:23:53] -rw-r--r--. 1 boincer umatlas       9338 Jan 13 04:23 runtime_log.err
[2026-01-13 04:23:53] -rw-------. 1 boincer umatlas        660 Jan 13 04:23 LUfLDm7nSz8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMkhKDmhuEWUo.diag
[2026-01-13 04:23:53] -rw-r--r--. 1 boincer umatlas      21684 Jan 13 04:23 stderr.txt
[2026-01-13 04:23:53] HITS file was successfully produced:
[2026-01-13 04:23:53] -rw-------. 1 boincer umatlas 1178969499 Jan 13 04:21 shared/HITS.pool.root.1
[2026-01-13 04:23:53]  *** Contents of shared directory: ***
[2026-01-13 04:23:53] total 1478848
[2026-01-13 04:23:53] -rw-r--r--. 2 boincer umatlas  320198827 Jan 12 03:55 ATLAS.root_0
[2026-01-13 04:23:53] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 03:55 start_atlas.sh
[2026-01-13 04:23:53] -rw-r--r--. 2 boincer umatlas     592601 Jan 12 03:55 input.tar.gz
[2026-01-13 04:23:53] -rw-------. 1 boincer umatlas 1178969499 Jan 13 04:21 HITS.pool.root.1
[2026-01-13 04:23:53] -rw-------. 1 boincer umatlas   14551040 Jan 13 04:23 result.tar.gz
04:23:54 (71404): run_atlas exited; CPU time 239423.860155
04:23:54 (71404): called boinc_finish(0)

</stderr_txt>
]]>

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