Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:51:06 (31962): wrapper (7.7.26015): starting
03:51:06 (31962): wrapper: running run_atlas (--nthreads 12)
[2026-01-12 03:51:06] Arguments: --nthreads 12
[2026-01-12 03:51:06] Threads: 12
[2026-01-12 03:51:06] Checking for CVMFS
[2026-01-12 03:51:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 03:51:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 03:51:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 03:51:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 03:51:07] 2.11.2.0 2979 355158 91940 155045 3 1 17293068 20275200 1 130560 1 148493713 99.956 20428199 16163 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 03:51:07] CVMFS is ok
[2026-01-12 03:51:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 03:51:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 03:51:07] Further information can be found at the LHC@home message board.
[2026-01-12 03:51:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 03:51:07] Checking for apptainer binary...
[2026-01-12 03:51:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 03:51:07] Running /usr/bin/apptainer --version
[2026-01-12 03:51:07] apptainer version 1.3.2-1.el7
[2026-01-12 03:51:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 03:51:08] c-205-21.aglt2.org
[2026-01-12 03:51:08] apptainer works
[2026-01-12 03:51:08] Set ATHENA_PROC_NUMBER=12
[2026-01-12 03:51:08] Set ATHENA_CORE_NUMBER=12
[2026-01-12 03:51:08] Starting ATLAS job with PandaID=6966855550
[2026-01-12 03:51:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 12:48:21]  *** The last 200 lines of the pilot log: ***
[2026-01-12 12:48:21] 2026-01-12 17:47:33,679 | INFO     | time since job start (32169s) is within the limit (349056.0s)
[2026-01-12 12:48:21] 2026-01-12 17:47:33,679 | INFO     | 32172s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-12 12:48:21] 2026-01-12 17:47:35,327 | INFO     | monitor loop #2414: job 0:6966855550 is in state 'finished'
[2026-01-12 12:48:21] 2026-01-12 17:47:35,327 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 12:48:21] 2026-01-12 17:47:35,684 | INFO     | time since job start (32171s) is within the limit (349056.0s)
[2026-01-12 12:48:21] 2026-01-12 17:47:36,190 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-12 12:48:21] 2026-01-12 17:47:36,194 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2026-01-12 12:48:21] 2026-01-12 17:47:36,196 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6966855550/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 12:48:21] 2026-01-12 17:47:36,197 | INFO     | extracted standard info from prmon json
[2026-01-12 12:48:21] 2026-01-12 17:47:36,197 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 12:48:21] 2026-01-12 17:47:36,197 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 12:48:21] 2026-01-12 17:47:36,206 | INFO     | fitting pss+swap vs Time
[2026-01-12 12:48:21] 2026-01-12 17:47:36,207 | INFO     | sum of square deviations: 45384676395.4043
[2026-01-12 12:48:21] 2026-01-12 17:47:36,213 | INFO     | sum of deviations: 706659450887.6849
[2026-01-12 12:48:21] 2026-01-12 17:47:36,213 | INFO     | mean x: 1768223963.0550284
[2026-01-12 12:48:21] 2026-01-12 17:47:36,213 | INFO     | mean y: 4109974.6660341555
[2026-01-12 12:48:21] 2026-01-12 17:47:36,213 | INFO     | intersect: -27527917881.88692
[2026-01-12 12:48:21] 2026-01-12 17:47:36,214 | INFO     | chi2: 6.104158698346856
[2026-01-12 12:48:21] 2026-01-12 17:47:36,215 | INFO     | sum of square deviations: 44105117062.88897
[2026-01-12 12:48:21] 2026-01-12 17:47:36,220 | INFO     | sum of deviations: 950045687419.7766
[2026-01-12 12:48:21] 2026-01-12 17:47:36,220 | INFO     | mean x: 1768223810.5555556
[2026-01-12 12:48:21] 2026-01-12 17:47:36,221 | INFO     | mean y: 4138964.8007662836
[2026-01-12 12:48:21] 2026-01-12 17:47:36,221 | INFO     | intersect: -38084262506.074585
[2026-01-12 12:48:21] 2026-01-12 17:47:36,221 | INFO     | chi2: 3.1310414245139477
[2026-01-12 12:48:21] 2026-01-12 17:47:36,221 | INFO     | current chi2=3.1310414245139477 (change=48.70642165050681 %)
[2026-01-12 12:48:21] 2026-01-12 17:47:36,222 | INFO     | sum of square deviations: 42849837255.37343
[2026-01-12 12:48:21] 2026-01-12 17:47:36,228 | INFO     | sum of deviations: 994009485689.9469
[2026-01-12 12:48:21] 2026-01-12 17:47:36,229 | INFO     | mean x: 1768223658.0560927
[2026-01-12 12:48:21] 2026-01-12 17:47:36,229 | INFO     | mean y: 4144264.588007737
[2026-01-12 12:48:21] 2026-01-12 17:47:36,229 | INFO     | intersect: -41014239969.96878
[2026-01-12 12:48:21] 2026-01-12 17:47:36,229 | INFO     | chi2: 2.7677103654025887
[2026-01-12 12:48:21] 2026-01-12 17:47:36,229 | INFO     | current chi2=2.7677103654025887 (change=11.604160081266292 %)
[2026-01-12 12:48:21] 2026-01-12 17:47:36,230 | INFO     | right removable region: 516
[2026-01-12 12:48:21] 2026-01-12 17:47:36,230 | INFO     | sum of square deviations: 44105099372.88897
[2026-01-12 12:48:21] 2026-01-12 17:47:36,237 | INFO     | sum of deviations: 480804178657.7774
[2026-01-12 12:48:21] 2026-01-12 17:47:36,237 | INFO     | mean x: 1768224115.5555556
[2026-01-12 12:48:21] 2026-01-12 17:47:36,237 | INFO     | mean y: 4136839.6800766285
[2026-01-12 12:48:21] 2026-01-12 17:47:36,237 | INFO     | intersect: -19271855180.534164
[2026-01-12 12:48:21] 2026-01-12 17:47:36,238 | INFO     | chi2: 3.5200097889067394
[2026-01-12 12:48:21] 2026-01-12 17:47:36,238 | INFO     | current chi2=3.5200097889067394 (change=42.33423534909016 %)
[2026-01-12 12:48:21] 2026-01-12 17:47:36,238 | INFO     | sum of square deviations: 42849801875.373405
[2026-01-12 12:48:21] 2026-01-12 17:47:36,245 | INFO     | sum of deviations: 433212725223.8495
[2026-01-12 12:48:21] 2026-01-12 17:47:36,245 | INFO     | mean x: 1768224268.0560927
[2026-01-12 12:48:21] 2026-01-12 17:47:36,245 | INFO     | mean y: 4142615.1431334624
[2026-01-12 12:48:21] 2026-01-12 17:47:36,245 | INFO     | intersect: -17872655419.99016
[2026-01-12 12:48:21] 2026-01-12 17:47:36,246 | INFO     | chi2: 3.469364162483592
[2026-01-12 12:48:21] 2026-01-12 17:47:36,246 | INFO     | current chi2=3.469364162483592 (change=1.4387922040091017 %)
[2026-01-12 12:48:21] 2026-01-12 17:47:36,246 | INFO     | left removable region: 20
[2026-01-12 12:48:21] 2026-01-12 17:47:36,246 | INFO     | sum of square deviations: 37837475246.304436
[2026-01-12 12:48:21] 2026-01-12 17:47:36,251 | INFO     | sum of deviations: 664409168716.0967
[2026-01-12 12:48:21] 2026-01-12 17:47:36,251 | INFO     | mean x: 1768224237.5584676
[2026-01-12 12:48:21] 2026-01-12 17:47:36,252 | INFO     | mean y: 4184734.5483870967
[2026-01-12 12:48:21] 2026-01-12 17:47:36,252 | INFO     | intersect: -31045043263.15264
[2026-01-12 12:48:21] 2026-01-12 17:47:36,252 | INFO     | chi2: 0.08904032847147987
[2026-01-12 12:48:21] 2026-01-12 17:47:36,252 | INFO     | current memory leak: 17.56 B/s (using 496 data points, chi2=0.09)
[2026-01-12 12:48:21] 2026-01-12 17:47:36,253 | INFO     | could have reported an average CPU frequency of 2410 MHz (21 samples)
[2026-01-12 12:48:21] 2026-01-12 17:47:36,253 | INFO     | ..............................
[2026-01-12 12:48:21] 2026-01-12 17:47:36,253 | INFO     | . Timing measurements:
[2026-01-12 12:48:21] 2026-01-12 17:47:36,253 | INFO     | . get job = 0 s
[2026-01-12 12:48:21] 2026-01-12 17:47:36,253 | INFO     | . initial setup = 2 s
[2026-01-12 12:48:21] 2026-01-12 17:47:36,253 | INFO     | . payload setup = 14 s
[2026-01-12 12:48:21] 2026-01-12 17:47:36,254 | INFO     | . stage-in = 0 s
[2026-01-12 12:48:21] 2026-01-12 17:47:36,254 | INFO     | . payload execution = 32123 s
[2026-01-12 12:48:21] 2026-01-12 17:47:36,254 | INFO     | . stage-out = 4 s
[2026-01-12 12:48:21] 2026-01-12 17:47:36,254 | INFO     | . log creation = 0 s
[2026-01-12 12:48:21] 2026-01-12 17:47:36,254 | INFO     | ..............................
[2026-01-12 12:48:21] 2026-01-12 17:47:36,335 | INFO     | 
[2026-01-12 12:48:21] 2026-01-12 17:47:36,335 | INFO     | job summary report
[2026-01-12 12:48:21] 2026-01-12 17:47:36,336 | INFO     | --------------------------------------------------
[2026-01-12 12:48:21] 2026-01-12 17:47:36,336 | INFO     | PanDA job id: 6966855550
[2026-01-12 12:48:21] 2026-01-12 17:47:36,336 | INFO     | task id: 48187943
[2026-01-12 12:48:21] 2026-01-12 17:47:36,336 | INFO     | errors: (none)
[2026-01-12 12:48:21] 2026-01-12 17:47:36,336 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 12:48:21] 2026-01-12 17:47:36,336 | INFO     | pilot state: finished 
[2026-01-12 12:48:21] 2026-01-12 17:47:36,337 | INFO     | transexitcode: 0
[2026-01-12 12:48:21] 2026-01-12 17:47:36,337 | INFO     | exeerrorcode: 0
[2026-01-12 12:48:21] 2026-01-12 17:47:36,337 | INFO     | exeerrordiag: 
[2026-01-12 12:48:21] 2026-01-12 17:47:36,337 | INFO     | exitcode: 0
[2026-01-12 12:48:21] 2026-01-12 17:47:36,337 | INFO     | exitmsg: OK
[2026-01-12 12:48:21] 2026-01-12 17:47:36,337 | INFO     | cpuconsumptiontime: 369348 s
[2026-01-12 12:48:21] 2026-01-12 17:47:36,338 | INFO     | nevents: 2050
[2026-01-12 12:48:21] 2026-01-12 17:47:36,338 | INFO     | neventsw: 0
[2026-01-12 12:48:21] 2026-01-12 17:47:36,338 | INFO     | pid: 10428
[2026-01-12 12:48:21] 2026-01-12 17:47:36,338 | INFO     | pgrp: 10428
[2026-01-12 12:48:21] 2026-01-12 17:47:36,338 | INFO     | corecount: 12
[2026-01-12 12:48:21] 2026-01-12 17:47:36,338 | INFO     | event service: False
[2026-01-12 12:48:21] 2026-01-12 17:47:36,339 | INFO     | sizes: {0: 2284621, 5: 2284883, 11: 2284939, 32141: 2344760, 32145: 2353758, 32148: 2353814, 32155: 2354188}
[2026-01-12 12:48:21] 2026-01-12 17:47:36,339 | INFO     | --------------------------------------------------
[2026-01-12 12:48:21] 2026-01-12 17:47:36,339 | INFO     | 
[2026-01-12 12:48:21] 2026-01-12 17:47:36,339 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-12 12:48:21] 2026-01-12 17:47:36,360 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,361 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,361 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,361 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,361 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,361 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,361 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,362 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,362 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,362 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,362 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,362 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,363 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,363 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,363 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,363 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,363 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,363 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 12:48:21] 2026-01-12 17:47:36,364 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,364 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 12:48:21] 2026-01-12 17:47:36,364 | INFO     | job 6966855550 has completed (purged errors)
[2026-01-12 12:48:21] 2026-01-12 17:47:36,364 | INFO     | overall cleanup function is called
[2026-01-12 12:48:21] 2026-01-12 17:47:37,382 | INFO     | --- collectZombieJob: --- 10, [10428]
[2026-01-12 12:48:21] 2026-01-12 17:47:37,383 | INFO     | zombie collector waiting for pid 10428
[2026-01-12 12:48:21] 2026-01-12 17:47:37,383 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 12:48:21] 2026-01-12 17:47:37,383 | INFO     | collected zombie processes
[2026-01-12 12:48:21] 2026-01-12 17:47:37,384 | INFO     | will attempt to kill all subprocesses of pid=10428
[2026-01-12 12:48:21] 2026-01-12 17:47:37,478 | INFO     | process IDs to be killed: [10428] (in reverse order)
[2026-01-12 12:48:21] 2026-01-12 17:47:37,531 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 12:48:21] 2026-01-12 17:47:37,532 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 12:48:21] 2026-01-12 17:47:37,535 | INFO     | did not find any defunct processes belonging to 10428
[2026-01-12 12:48:21] 2026-01-12 17:47:37,538 | INFO     | did not find any defunct processes belonging to 10428
[2026-01-12 12:48:21] 2026-01-12 17:47:37,539 | INFO     | ready for new job
[2026-01-12 12:48:21] 2026-01-12 17:47:37,539 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 12:48:21] 2026-01-12 17:47:37,542 | INFO     | ***************************************
[2026-01-12 12:48:21] 2026-01-12 17:47:37,542 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 12:48:21] 2026-01-12 17:47:37,543 | INFO     | ***************************************
[2026-01-12 12:48:21] 2026-01-12 17:47:37,543 | INFO     | 
[2026-01-12 12:48:21] 2026-01-12 17:47:37,543 | INFO     | architecture information:
[2026-01-12 12:48:21] 2026-01-12 17:47:37,544 | INFO     | executing command: cat /etc/os-release
[2026-01-12 12:48:21] 2026-01-12 17:47:37,558 | INFO     | cat /etc/os-release:
[2026-01-12 12:48:21] NAME="CentOS Linux"
[2026-01-12 12:48:21] VERSION="7 (Core)"
[2026-01-12 12:48:21] ID="centos"
[2026-01-12 12:48:21] ID_LIKE="rhel fedora"
[2026-01-12 12:48:21] VERSION_ID="7"
[2026-01-12 12:48:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 12:48:21] ANSI_COLOR="0;31"
[2026-01-12 12:48:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 12:48:21] HOME_URL="https://www.centos.org/"
[2026-01-12 12:48:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 12:48:21] 
[2026-01-12 12:48:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 12:48:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 12:48:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 12:48:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 12:48:21] 
[2026-01-12 12:48:21] 2026-01-12 17:47:37,558 | INFO     | ***************************************
[2026-01-12 12:48:21] 2026-01-12 17:47:38,061 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-12 12:48:21] 2026-01-12 17:47:38,078 | INFO     | sufficient remaining disk space (28142731264 B)
[2026-01-12 12:48:21] 2026-01-12 17:47:38,078 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 12:48:21] 2026-01-12 17:47:38,078 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 12:48:21] 2026-01-12 17:47:38,078 | INFO     | update_server=False
[2026-01-12 12:48:21] 2026-01-12 17:47:38,079 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 12:48:21] 2026-01-12 17:47:38,079 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 12:48:21] 2026-01-12 17:47:38,227 | INFO     | all data control threads have been joined
[2026-01-12 12:48:21] 2026-01-12 17:47:38,298 | INFO     | all payload control threads have been joined
[2026-01-12 12:48:21] 2026-01-12 17:47:38,841 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 12:48:21] 2026-01-12 17:47:38,841 | INFO     | aborting loop
[2026-01-12 12:48:21] 2026-01-12 17:47:39,039 | INFO     | all job control threads have been joined
[2026-01-12 12:48:21] 2026-01-12 17:47:39,080 | INFO     | [job] queue monitor thread has finished
[2026-01-12 12:48:21] 2026-01-12 17:47:39,084 | INFO     | [job] retrieve thread has finished
[2026-01-12 12:48:21] 2026-01-12 17:47:39,094 | INFO     | [payload] validate_post thread has finished
[2026-01-12 12:48:21] 2026-01-12 17:47:39,232 | INFO     | [data] control thread has finished
[2026-01-12 12:48:21] 2026-01-12 17:47:39,249 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 12:48:21] 2026-01-12 17:47:39,264 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 12:48:21] 2026-01-12 17:47:39,300 | INFO     | [payload] control thread has finished
[2026-01-12 12:48:21] 2026-01-12 17:47:39,331 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 12:48:21] 2026-01-12 17:47:39,392 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 12:48:21] 2026-01-12 17:47:39,438 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 12:48:21] 2026-01-12 17:47:39,548 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 12:48:21] 2026-01-12 17:47:39,846 | INFO     | [job] job monitor thread has finished
[2026-01-12 12:48:21] 2026-01-12 17:47:39,865 | INFO     | [job] validate thread has finished
[2026-01-12 12:48:21] 2026-01-12 17:47:40,044 | INFO     | [job] control thread has finished
[2026-01-12 12:48:21] 2026-01-12 17:47:40,223 | INFO     | [data] copytool_in thread has finished
[2026-01-12 12:48:21] 2026-01-12 17:47:40,299 | INFO     | [payload] failed_post thread has finished
[2026-01-12 12:48:21] 2026-01-12 17:47:41,255 | INFO     | [data] copytool_out thread has finished
[2026-01-12 12:48:21] 2026-01-12 17:47:43,337 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 12:48:21] 2026-01-12 17:48:08,885 | INFO     | PID=3387 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-12 12:48:21] 2026-01-12 17:48:08,886 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 12:48:21] 2026-01-12 17:48:08,886 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 12:48:21] 2026-01-12 17:48:08,886 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 12:48:21] 2026-01-12 17:48:16,429 | INFO     | [monitor] cgroup control has ended
[2026-01-12 12:48:21] 2026-01-12 17:48:16,604 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140234030765888)>', '<ExcThread(monitor, started 140233056167680)>']
[2026-01-12 12:48:21] 2026-01-12 17:48:16,925 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 12:48:21] 2026-01-12 17:48:16,926 | INFO     | [monitor] control thread has ended
[2026-01-12 12:48:21] 2026-01-12 17:48:21,619 | INFO     | all workflow threads have been joined
[2026-01-12 12:48:21] 2026-01-12 17:48:21,620 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 12:48:21] 2026-01-12 17:48:21,635 | INFO     | traces error code: 0
[2026-01-12 12:48:21] 2026-01-12 17:48:21,635 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 12:48:21] 2026-01-12 17:48:21,739 [wrapper] ==== pilot stdout END ====
[2026-01-12 12:48:21] 2026-01-12 17:48:21,743 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 12:48:21] 2026-01-12 17:48:21,747 [wrapper] pilotpid: 3387
[2026-01-12 12:48:21] 2026-01-12 17:48:21,750 [wrapper] Pilot exit status: 0
[2026-01-12 12:48:21] 2026-01-12 17:48:21,765 [wrapper] pandaids: 6966855550
[2026-01-12 12:48:21] 2026-01-12 17:48:21,809 [wrapper] cleanup supervisor_pilot 27109 3388
[2026-01-12 12:48:21] 2026-01-12 17:48:21,813 [wrapper] Test setup, not cleaning
[2026-01-12 12:48:21] 2026-01-12 17:48:21,817 [wrapper] apfmon messages muted
[2026-01-12 12:48:21] 2026-01-12 17:48:21,822 [wrapper] ==== wrapper stdout END ====
[2026-01-12 12:48:21] 2026-01-12 17:48:21,826 [wrapper] ==== wrapper stderr END ====
[2026-01-12 12:48:21]  *** Error codes and diagnostics ***
[2026-01-12 12:48:21]     "exeErrorCode": 0,
[2026-01-12 12:48:21]     "exeErrorDiag": "",
[2026-01-12 12:48:21]     "pilotErrorCode": 0,
[2026-01-12 12:48:21]     "pilotErrorDiag": "",
[2026-01-12 12:48:21]  *** Listing of results directory ***
[2026-01-12 12:48:21] total 1491916
[2026-01-12 12:48:21] -rw-r--r-- 1 boincer umatlas     579449 Jan 12 03:42 pilot3.tar.gz
[2026-01-12 12:48:21] -rw-r--r-- 1 boincer umatlas       5112 Jan 12 03:47 queuedata.json
[2026-01-12 12:48:21] -rwx------ 1 boincer umatlas      36322 Jan 12 03:48 runpilot2-wrapper.sh
[2026-01-12 12:48:21] -rw-r--r-- 1 boincer umatlas        100 Jan 12 03:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 12:48:21] -rwxr-xr-x 1 boincer umatlas       7986 Jan 12 03:51 run_atlas
[2026-01-12 12:48:21] -rw-r--r-- 1 boincer umatlas        105 Jan 12 03:51 job.xml
[2026-01-12 12:48:21] -rw-r--r-- 2 boincer umatlas  322497562 Jan 12 03:51 EVNT.48118027._000121.pool.root.1
[2026-01-12 12:48:21] -rw-r--r-- 2 boincer umatlas      15847 Jan 12 03:51 start_atlas.sh
[2026-01-12 12:48:21] drwxrwx--x 2 boincer umatlas       4096 Jan 12 03:51 shared
[2026-01-12 12:48:21] -rw-r--r-- 2 boincer umatlas     592619 Jan 12 03:51 input.tar.gz
[2026-01-12 12:48:21] -rw-r--r-- 1 boincer umatlas          0 Jan 12 03:51 boinc_lockfile
[2026-01-12 12:48:21] -rw-r--r-- 1 boincer umatlas       2896 Jan 12 03:51 pandaJob.out
[2026-01-12 12:48:21] -rw------- 1 boincer umatlas         57 Jan 12 03:51 setup.sh.local
[2026-01-12 12:48:21] -rw------- 1 boincer umatlas     987688 Jan 12 03:51 agis_schedconf.cvmfs.json
[2026-01-12 12:48:21] drwx------ 5 boincer umatlas       4096 Jan 12 03:51 pilot3
[2026-01-12 12:48:21] -rw-r--r-- 1 boincer umatlas       5955 Jan 12 12:37 init_data.xml
[2026-01-12 12:48:21] -rw-r--r-- 1 boincer umatlas        532 Jan 12 12:39 boinc_task_state.xml
[2026-01-12 12:48:21] -rw------- 1 boincer umatlas 1186964340 Jan 12 12:46 HITS.48187943._000587.pool.root.1
[2026-01-12 12:48:21] -rw------- 1 boincer umatlas       1062 Jan 12 12:47 memory_monitor_summary.json
[2026-01-12 12:48:21] -rw------- 1 boincer umatlas    1516240 Jan 12 12:47 agis_ddmendpoints.agis.ALL.json
[2026-01-12 12:48:21] -rw------- 1 boincer umatlas    2661515 Jan 12 12:47 log.48187943._000587.job.log.tgz.1
[2026-01-12 12:48:21] -rw------- 1 boincer umatlas         95 Jan 12 12:47 pilot_heartbeat.json
[2026-01-12 12:48:21] -rw------- 1 boincer umatlas      28069 Jan 12 12:47 heartbeat.json
[2026-01-12 12:48:21] -rw-r--r-- 1 boincer umatlas         29 Jan 12 12:48 wrapper_checkpoint.txt
[2026-01-12 12:48:21] -rw-r--r-- 1 boincer umatlas       8192 Jan 12 12:48 boinc_mmap_file
[2026-01-12 12:48:21] -rw------- 1 boincer umatlas       4745 Jan 12 12:48 pilotlog.txt
[2026-01-12 12:48:21] -rw------- 1 boincer umatlas    4492005 Jan 12 12:48 log.48187943._000587.job.log.1
[2026-01-12 12:48:21] -rw------- 1 boincer umatlas        353 Jan 12 12:48 output.list
[2026-01-12 12:48:21] -rw-r--r-- 1 boincer umatlas        620 Jan 12 12:48 runtime_log
[2026-01-12 12:48:21] -rw------- 1 boincer umatlas    7188480 Jan 12 12:48 result.tar.gz
[2026-01-12 12:48:21] -rw-r--r-- 1 boincer umatlas       9345 Jan 12 12:48 runtime_log.err
[2026-01-12 12:48:21] -rw------- 1 boincer umatlas        672 Jan 12 12:48 DKsMDmAmSz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpBnKDmoQgPen.diag
[2026-01-12 12:48:21] -rw-r--r-- 1 boincer umatlas      21238 Jan 12 12:48 stderr.txt
[2026-01-12 12:48:21] HITS file was successfully produced:
[2026-01-12 12:48:21] -rw------- 1 boincer umatlas 1186964340 Jan 12 12:46 shared/HITS.pool.root.1
[2026-01-12 12:48:21]  *** Contents of shared directory: ***
[2026-01-12 12:48:21] total 1481712
[2026-01-12 12:48:21] -rw-r--r-- 2 boincer umatlas  322497562 Jan 12 03:51 ATLAS.root_0
[2026-01-12 12:48:21] -rw-r--r-- 2 boincer umatlas      15847 Jan 12 03:51 start_atlas.sh
[2026-01-12 12:48:21] -rw-r--r-- 2 boincer umatlas     592619 Jan 12 03:51 input.tar.gz
[2026-01-12 12:48:21] -rw------- 1 boincer umatlas 1186964340 Jan 12 12:46 HITS.pool.root.1
[2026-01-12 12:48:21] -rw------- 1 boincer umatlas    7188480 Jan 12 12:48 result.tar.gz
12:48:23 (31962): run_atlas exited; CPU time 358101.983593
12:48:23 (31962): called boinc_finish(0)

</stderr_txt>
]]>

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