Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:50:37 (3731373): wrapper (7.7.26015): starting
03:50:37 (3731373): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 03:50:37] Arguments: --nthreads 8
[2026-01-12 03:50:37] Threads: 8
[2026-01-12 03:50:37] Checking for CVMFS
[2026-01-12 03:50:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 03:50:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 03:50:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 03:50:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 03:50:37] 2.13.3.0 12977 97510 607340 155045 3 150 32931298 32935936 18582 16776704 0 423953174 99.550 512358785 33643 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-12 03:50:37] CVMFS is ok
[2026-01-12 03:50:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 03:50:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 03:50:37] Further information can be found at the LHC@home message board.
[2026-01-12 03:50:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 03:50:37] Checking for apptainer binary...
[2026-01-12 03:50:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 03:50:37] Running /usr/bin/apptainer --version
[2026-01-12 03:50:37] apptainer version 1.4.5-2.el9
[2026-01-12 03:50:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 03:50:37] c6-12-29-1.aglt2.org
[2026-01-12 03:50:37] apptainer works
[2026-01-12 03:50:37] Set ATHENA_PROC_NUMBER=8
[2026-01-12 03:50:37] Set ATHENA_CORE_NUMBER=8
[2026-01-12 03:50:38] Starting ATLAS job with PandaID=6966842725
[2026-01-12 03:50:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 15:31:43]  *** The last 200 lines of the pilot log: ***
[2026-01-13 15:31:43] 2026-01-13 20:30:39,025 | INFO     | extracted standard info from prmon json
[2026-01-13 15:31:43] 2026-01-13 20:30:39,025 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 15:31:43] 2026-01-13 20:30:39,025 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 15:31:43] 2026-01-13 20:30:39,060 | INFO     | fitting pss+swap vs Time
[2026-01-13 15:31:43] 2026-01-13 20:30:39,063 | INFO     | sum of square deviations: 2887959286967.6826
[2026-01-13 15:31:43] 2026-01-13 20:30:39,154 | INFO     | sum of deviations: 11305235186829.273
[2026-01-13 15:31:43] 2026-01-13 20:30:39,154 | INFO     | mean x: 1768272027.9876425
[2026-01-13 15:31:43] 2026-01-13 20:30:39,154 | INFO     | mean y: 3493481.8564638784
[2026-01-13 15:31:43] 2026-01-13 20:30:39,154 | INFO     | intersect: -6918602421.954509
[2026-01-13 15:31:43] 2026-01-13 20:30:39,157 | INFO     | chi2: 9.654339132943232
[2026-01-13 15:31:43] 2026-01-13 20:30:39,159 | INFO     | sum of square deviations: 2867420832696.7437
[2026-01-13 15:31:43] 2026-01-13 20:30:39,253 | INFO     | sum of deviations: 12161071072678.887
[2026-01-13 15:31:43] 2026-01-13 20:30:39,253 | INFO     | mean x: 1768271875.4983325
[2026-01-13 15:31:43] 2026-01-13 20:30:39,253 | INFO     | mean y: 3499836.39780848
[2026-01-13 15:31:43] 2026-01-13 20:30:39,253 | INFO     | intersect: -7495950439.106509
[2026-01-13 15:31:43] 2026-01-13 20:30:39,256 | INFO     | chi2: 6.533010911386396
[2026-01-13 15:31:43] 2026-01-13 20:30:39,256 | INFO     | current chi2=6.533010911386396 (change=32.33083257771643 %)
[2026-01-13 15:31:43] 2026-01-13 20:30:39,258 | INFO     | sum of square deviations: 2846979880375.8423
[2026-01-13 15:31:43] 2026-01-13 20:30:39,348 | INFO     | sum of deviations: 13024984667219.822
[2026-01-13 15:31:43] 2026-01-13 20:30:39,349 | INFO     | mean x: 1768271723.008596
[2026-01-13 15:31:43] 2026-01-13 20:30:39,349 | INFO     | mean y: 3506279.900668577
[2026-01-13 15:31:43] 2026-01-13 20:30:39,349 | INFO     | intersect: -8086368972.967232
[2026-01-13 15:31:43] 2026-01-13 20:30:39,351 | INFO     | chi2: 3.233240006817908
[2026-01-13 15:31:43] 2026-01-13 20:30:39,352 | INFO     | current chi2=3.233240006817908 (change=50.50919016249171 %)
[2026-01-13 15:31:43] 2026-01-13 20:30:39,354 | INFO     | sum of square deviations: 2826635941683.613
[2026-01-13 15:31:43] 2026-01-13 20:30:39,442 | INFO     | sum of deviations: 13081032712383.162
[2026-01-13 15:31:43] 2026-01-13 20:30:39,442 | INFO     | mean x: 1768271570.5174725
[2026-01-13 15:31:43] 2026-01-13 20:30:39,442 | INFO     | mean y: 3506698.680708473
[2026-01-13 15:31:43] 2026-01-13 20:30:39,442 | INFO     | intersect: -8179654746.771985
[2026-01-13 15:31:43] 2026-01-13 20:30:39,445 | INFO     | chi2: 3.0921454023547517
[2026-01-13 15:31:43] 2026-01-13 20:30:39,445 | INFO     | current chi2=3.0921454023547517 (change=4.363876611870173 %)
[2026-01-13 15:31:43] 2026-01-13 20:30:39,445 | INFO     | right removable region: 2088
[2026-01-13 15:31:43] 2026-01-13 20:30:39,447 | INFO     | sum of square deviations: 2867415073076.7446
[2026-01-13 15:31:43] 2026-01-13 20:30:39,537 | INFO     | sum of deviations: 10478605967756.533
[2026-01-13 15:31:43] 2026-01-13 20:30:39,537 | INFO     | mean x: 1768272180.4983325
[2026-01-13 15:31:43] 2026-01-13 20:30:39,537 | INFO     | mean y: 3499616.292996665
[2026-01-13 15:31:43] 2026-01-13 20:30:39,537 | INFO     | intersect: -6458427572.820223
[2026-01-13 15:31:43] 2026-01-13 20:30:39,540 | INFO     | chi2: 6.906137547488688
[2026-01-13 15:31:43] 2026-01-13 20:30:39,540 | INFO     | current chi2=6.906137547488688 (change=28.465973150631633 %)
[2026-01-13 15:31:43] 2026-01-13 20:30:39,542 | INFO     | sum of square deviations: 2846970664931.9946
[2026-01-13 15:31:43] 2026-01-13 20:30:39,640 | INFO     | sum of deviations: 10300274944981.283
[2026-01-13 15:31:43] 2026-01-13 20:30:39,641 | INFO     | mean x: 1768272333.000955
[2026-01-13 15:31:43] 2026-01-13 20:30:39,641 | INFO     | mean y: 3500946.346704871
[2026-01-13 15:31:43] 2026-01-13 20:30:39,641 | INFO     | intersect: -6394068031.747562
[2026-01-13 15:31:43] 2026-01-13 20:30:39,643 | INFO     | chi2: 6.861852143882205
[2026-01-13 15:31:43] 2026-01-13 20:30:39,644 | INFO     | current chi2=6.861852143882205 (change=0.6412470545505919 %)
[2026-01-13 15:31:43] 2026-01-13 20:30:39,644 | INFO     | left removable region: 20
[2026-01-13 15:31:43] 2026-01-13 20:30:39,646 | INFO     | sum of square deviations: 2742235071430.903
[2026-01-13 15:31:43] 2026-01-13 20:30:39,732 | INFO     | sum of deviations: 11803274660118.645
[2026-01-13 15:31:43] 2026-01-13 20:30:39,733 | INFO     | mean x: 1768272150.0386846
[2026-01-13 15:31:43] 2026-01-13 20:30:39,733 | INFO     | mean y: 3516142.7920696326
[2026-01-13 15:31:43] 2026-01-13 20:30:39,733 | INFO     | intersect: -7607575290.683905
[2026-01-13 15:31:43] 2026-01-13 20:30:39,735 | INFO     | chi2: 0.25522966456875
[2026-01-13 15:31:43] 2026-01-13 20:30:39,736 | INFO     | current memory leak: 4.30 B/s (using 2068 data points, chi2=0.26)
[2026-01-13 15:31:43] 2026-01-13 20:30:39,739 | INFO     | could have reported an average CPU frequency of 2656 MHz (73 samples)
[2026-01-13 15:31:43] 2026-01-13 20:30:39,739 | INFO     | ..............................
[2026-01-13 15:31:43] 2026-01-13 20:30:39,739 | INFO     | . Timing measurements:
[2026-01-13 15:31:43] 2026-01-13 20:30:39,739 | INFO     | . get job = 0 s
[2026-01-13 15:31:43] 2026-01-13 20:30:39,739 | INFO     | . initial setup = 2 s
[2026-01-13 15:31:43] 2026-01-13 20:30:39,739 | INFO     | . payload setup = 10 s
[2026-01-13 15:31:43] 2026-01-13 20:30:39,739 | INFO     | . stage-in = 0 s
[2026-01-13 15:31:43] 2026-01-13 20:30:39,739 | INFO     | . payload execution = 128344 s
[2026-01-13 15:31:43] 2026-01-13 20:30:39,739 | INFO     | . stage-out = 4 s
[2026-01-13 15:31:43] 2026-01-13 20:30:39,739 | INFO     | . log creation = 1 s
[2026-01-13 15:31:43] 2026-01-13 20:30:39,739 | INFO     | ..............................
[2026-01-13 15:31:43] 2026-01-13 20:30:39,844 | INFO     | 
[2026-01-13 15:31:43] 2026-01-13 20:30:39,845 | INFO     | job summary report
[2026-01-13 15:31:43] 2026-01-13 20:30:39,845 | INFO     | --------------------------------------------------
[2026-01-13 15:31:43] 2026-01-13 20:30:39,845 | INFO     | PanDA job id: 6966842725
[2026-01-13 15:31:43] 2026-01-13 20:30:39,846 | INFO     | task id: 48187943
[2026-01-13 15:31:43] 2026-01-13 20:30:39,846 | INFO     | errors: (none)
[2026-01-13 15:31:43] 2026-01-13 20:30:39,846 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 15:31:43] 2026-01-13 20:30:39,846 | INFO     | pilot state: finished 
[2026-01-13 15:31:43] 2026-01-13 20:30:39,847 | INFO     | transexitcode: 0
[2026-01-13 15:31:43] 2026-01-13 20:30:39,847 | INFO     | exeerrorcode: 0
[2026-01-13 15:31:43] 2026-01-13 20:30:39,847 | INFO     | exeerrordiag: 
[2026-01-13 15:31:43] 2026-01-13 20:30:39,847 | INFO     | exitcode: 0
[2026-01-13 15:31:43] 2026-01-13 20:30:39,847 | INFO     | exitmsg: OK
[2026-01-13 15:31:43] 2026-01-13 20:30:39,847 | INFO     | cpuconsumptiontime: 316282 s
[2026-01-13 15:31:43] 2026-01-13 20:30:39,848 | INFO     | nevents: 2050
[2026-01-13 15:31:43] 2026-01-13 20:30:39,848 | INFO     | neventsw: 0
[2026-01-13 15:31:43] 2026-01-13 20:30:39,848 | INFO     | pid: 3767810
[2026-01-13 15:31:43] 2026-01-13 20:30:39,848 | INFO     | pgrp: 3767810
[2026-01-13 15:31:43] 2026-01-13 20:30:39,848 | INFO     | corecount: 8
[2026-01-13 15:31:43] 2026-01-13 20:30:39,849 | INFO     | event service: False
[2026-01-13 15:31:43] 2026-01-13 20:30:39,849 | INFO     | sizes: {0: 2284619, 5: 2284881, 11: 2284937, 128359: 2388041, 128365: 2397039, 128368: 2397095, 128374: 2397469}
[2026-01-13 15:31:43] 2026-01-13 20:30:39,849 | INFO     | --------------------------------------------------
[2026-01-13 15:31:43] 2026-01-13 20:30:39,849 | INFO     | 
[2026-01-13 15:31:43] 2026-01-13 20:30:39,850 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-13 15:31:43] 2026-01-13 20:30:39,879 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,880 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,880 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,880 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,880 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,880 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,880 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,881 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,881 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,881 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,881 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,881 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,881 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,881 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,881 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,882 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,882 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,882 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 15:31:43] 2026-01-13 20:30:39,882 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,882 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 15:31:43] 2026-01-13 20:30:39,882 | INFO     | job 6966842725 has completed (purged errors)
[2026-01-13 15:31:43] 2026-01-13 20:30:39,883 | INFO     | overall cleanup function is called
[2026-01-13 15:31:43] 2026-01-13 20:30:40,903 | INFO     | --- collectZombieJob: --- 10, [3767810]
[2026-01-13 15:31:43] 2026-01-13 20:30:40,904 | INFO     | zombie collector waiting for pid 3767810
[2026-01-13 15:31:43] 2026-01-13 20:30:40,904 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 15:31:43] 2026-01-13 20:30:40,904 | INFO     | collected zombie processes
[2026-01-13 15:31:43] 2026-01-13 20:30:40,904 | INFO     | will attempt to kill all subprocesses of pid=3767810
[2026-01-13 15:31:43] 2026-01-13 20:30:41,422 | INFO     | process IDs to be killed: [3767810] (in reverse order)
[2026-01-13 15:31:43] 2026-01-13 20:30:41,558 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 15:31:43] 2026-01-13 20:30:41,558 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 15:31:43] 2026-01-13 20:30:41,577 | INFO     | did not find any defunct processes belonging to 3767810
[2026-01-13 15:31:43] 2026-01-13 20:30:41,595 | INFO     | did not find any defunct processes belonging to 3767810
[2026-01-13 15:31:43] 2026-01-13 20:30:41,595 | INFO     | ready for new job
[2026-01-13 15:31:43] 2026-01-13 20:30:41,595 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 15:31:43] 2026-01-13 20:30:41,605 | INFO     | ***************************************
[2026-01-13 15:31:43] 2026-01-13 20:30:41,605 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 15:31:43] 2026-01-13 20:30:41,605 | INFO     | ***************************************
[2026-01-13 15:31:43] 2026-01-13 20:30:41,605 | INFO     | 
[2026-01-13 15:31:43] 2026-01-13 20:30:41,611 | INFO     | architecture information:
[2026-01-13 15:31:43] 2026-01-13 20:30:41,612 | INFO     | executing command: cat /etc/os-release
[2026-01-13 15:31:43] 2026-01-13 20:30:41,635 | INFO     | cat /etc/os-release:
[2026-01-13 15:31:43] NAME="CentOS Linux"
[2026-01-13 15:31:43] VERSION="7 (Core)"
[2026-01-13 15:31:43] ID="centos"
[2026-01-13 15:31:43] ID_LIKE="rhel fedora"
[2026-01-13 15:31:43] VERSION_ID="7"
[2026-01-13 15:31:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 15:31:43] ANSI_COLOR="0;31"
[2026-01-13 15:31:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 15:31:43] HOME_URL="https://www.centos.org/"
[2026-01-13 15:31:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 15:31:43] 
[2026-01-13 15:31:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 15:31:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 15:31:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 15:31:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 15:31:43] 
[2026-01-13 15:31:43] 2026-01-13 20:30:41,636 | INFO     | ***************************************
[2026-01-13 15:31:43] 2026-01-13 20:30:42,140 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-13 15:31:43] 2026-01-13 20:30:42,161 | INFO     | sufficient remaining disk space (93461676032 B)
[2026-01-13 15:31:43] 2026-01-13 20:30:42,162 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 15:31:43] 2026-01-13 20:30:42,162 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 15:31:43] 2026-01-13 20:30:42,162 | INFO     | update_server=False
[2026-01-13 15:31:43] 2026-01-13 20:30:42,162 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 15:31:43] 2026-01-13 20:30:42,164 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 15:31:43] 2026-01-13 20:30:42,223 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 15:31:43] 2026-01-13 20:30:42,225 | INFO     | aborting loop
[2026-01-13 15:31:43] 2026-01-13 20:30:42,513 | INFO     | all data control threads have been joined
[2026-01-13 15:31:43] 2026-01-13 20:30:42,882 | INFO     | all payload control threads have been joined
[2026-01-13 15:31:43] 2026-01-13 20:30:43,167 | INFO     | [job] retrieve thread has finished
[2026-01-13 15:31:43] 2026-01-13 20:30:43,232 | INFO     | [job] job monitor thread has finished
[2026-01-13 15:31:43] 2026-01-13 20:30:43,299 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 15:31:43] 2026-01-13 20:30:43,323 | INFO     | [job] validate thread has finished
[2026-01-13 15:31:43] 2026-01-13 20:30:43,519 | INFO     | [data] control thread has finished
[2026-01-13 15:31:43] 2026-01-13 20:30:43,566 | INFO     | [payload] validate_post thread has finished
[2026-01-13 15:31:43] 2026-01-13 20:30:43,653 | INFO     | [payload] failed_post thread has finished
[2026-01-13 15:31:43] 2026-01-13 20:30:43,762 | INFO     | all job control threads have been joined
[2026-01-13 15:31:43] 2026-01-13 20:30:43,845 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 15:31:43] 2026-01-13 20:30:43,857 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 15:31:43] 2026-01-13 20:30:43,888 | INFO     | [payload] control thread has finished
[2026-01-13 15:31:43] 2026-01-13 20:30:44,136 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 15:31:43] 2026-01-13 20:30:44,170 | INFO     | [data] copytool_out thread has finished
[2026-01-13 15:31:43] 2026-01-13 20:30:44,510 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 15:31:43] 2026-01-13 20:30:44,540 | INFO     | [data] copytool_in thread has finished
[2026-01-13 15:31:43] 2026-01-13 20:30:44,769 | INFO     | [job] control thread has finished
[2026-01-13 15:31:43] 2026-01-13 20:30:44,855 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 15:31:43] 2026-01-13 20:30:45,861 | INFO     | [job] queue monitor thread has finished
[2026-01-13 15:31:43] 2026-01-13 20:30:48,142 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 15:31:43] 2026-01-13 20:31:12,584 | INFO     | PID=3739290 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-13 15:31:43] 2026-01-13 20:31:12,584 | INFO     | .. there are 21 such processes running
[2026-01-13 15:31:43] 2026-01-13 20:31:12,585 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 15:31:43] 2026-01-13 20:31:12,585 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 15:31:43] 2026-01-13 20:31:12,585 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 15:31:43] 2026-01-13 20:31:37,752 | INFO     | [monitor] cgroup control has ended
[2026-01-13 15:31:43] 2026-01-13 20:31:38,271 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140148459423552)>', '<ExcThread(monitor, started 140147962128128)>']
[2026-01-13 15:31:43] 2026-01-13 20:31:38,730 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 15:31:43] 2026-01-13 20:31:38,731 | INFO     | [monitor] control thread has ended
[2026-01-13 15:31:43] 2026-01-13 20:31:43,297 | INFO     | all workflow threads have been joined
[2026-01-13 15:31:43] 2026-01-13 20:31:43,298 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 15:31:43] 2026-01-13 20:31:43,299 | INFO     | traces error code: 0
[2026-01-13 15:31:43] 2026-01-13 20:31:43,299 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 15:31:43] 2026-01-13 20:31:43,462 [wrapper] ==== pilot stdout END ====
[2026-01-13 15:31:43] 2026-01-13 20:31:43,465 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 15:31:43] 2026-01-13 20:31:43,469 [wrapper] pilotpid: 3739290
[2026-01-13 15:31:43] 2026-01-13 20:31:43,472 [wrapper] Pilot exit status: 0
[2026-01-13 15:31:43] 2026-01-13 20:31:43,488 [wrapper] pandaids: 6966842725
[2026-01-13 15:31:43] 2026-01-13 20:31:43,576 [wrapper] cleanup supervisor_pilot  255885 3739291
[2026-01-13 15:31:43] 2026-01-13 20:31:43,580 [wrapper] Test setup, not cleaning
[2026-01-13 15:31:43] 2026-01-13 20:31:43,583 [wrapper] apfmon messages muted
[2026-01-13 15:31:43] 2026-01-13 20:31:43,586 [wrapper] ==== wrapper stdout END ====
[2026-01-13 15:31:43] 2026-01-13 20:31:43,590 [wrapper] ==== wrapper stderr END ====
[2026-01-13 15:31:43]  *** Error codes and diagnostics ***
[2026-01-13 15:31:43]     "exeErrorCode": 0,
[2026-01-13 15:31:43]     "exeErrorDiag": "",
[2026-01-13 15:31:43]     "pilotErrorCode": 0,
[2026-01-13 15:31:43]     "pilotErrorDiag": "",
[2026-01-13 15:31:43]  *** Listing of results directory ***
[2026-01-13 15:31:43] total 1504740
[2026-01-13 15:31:43] -rw-r--r--. 1 boincer umatlas     579449 Jan 12 03:42 pilot3.tar.gz
[2026-01-13 15:31:43] -rw-r--r--. 1 boincer umatlas       5112 Jan 12 03:47 queuedata.json
[2026-01-13 15:31:43] -rwx------. 1 boincer umatlas      36322 Jan 12 03:48 runpilot2-wrapper.sh
[2026-01-13 15:31:43] -rw-r--r--. 1 boincer umatlas        100 Jan 12 03:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 15:31:43] -rwxr-xr-x. 1 boincer umatlas       7986 Jan 12 03:50 run_atlas
[2026-01-13 15:31:43] -rw-r--r--. 1 boincer umatlas        105 Jan 12 03:50 job.xml
[2026-01-13 15:31:43] -rw-r--r--. 2 boincer umatlas  320658665 Jan 12 03:50 EVNT.48118027._000048.pool.root.1
[2026-01-13 15:31:43] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 03:50 start_atlas.sh
[2026-01-13 15:31:43] drwxrwx--x. 2 boincer umatlas       4096 Jan 12 03:50 shared
[2026-01-13 15:31:43] -rw-r--r--. 2 boincer umatlas     592613 Jan 12 03:50 input.tar.gz
[2026-01-13 15:31:43] -rw-r--r--. 1 boincer umatlas          0 Jan 12 03:50 boinc_lockfile
[2026-01-13 15:31:43] -rw-r--r--. 1 boincer umatlas       2895 Jan 12 03:50 pandaJob.out
[2026-01-13 15:31:43] -rw-------. 1 boincer umatlas         57 Jan 12 03:50 setup.sh.local
[2026-01-13 15:31:43] -rw-------. 1 boincer umatlas     987688 Jan 12 03:50 agis_schedconf.cvmfs.json
[2026-01-13 15:31:43] drwx------. 5 boincer umatlas       4096 Jan 12 03:50 pilot3
[2026-01-13 15:31:43] -rw-r--r--. 1 boincer umatlas        534 Jan 13 15:17 boinc_task_state.xml
[2026-01-13 15:31:43] -rw-r--r--. 1 boincer umatlas       6882 Jan 13 15:28 init_data.xml
[2026-01-13 15:31:43] -rw-------. 1 boincer umatlas 1177960625 Jan 13 15:29 HITS.48187943._000234.pool.root.1
[2026-01-13 15:31:43] -rw-------. 1 boincer umatlas       1057 Jan 13 15:30 memory_monitor_summary.json
[2026-01-13 15:31:43] -rw-------. 1 boincer umatlas    1516246 Jan 13 15:30 agis_ddmendpoints.agis.ALL.json
[2026-01-13 15:31:43] -rw-------. 1 boincer umatlas    3264367 Jan 13 15:30 log.48187943._000234.job.log.tgz.1
[2026-01-13 15:31:43] -rw-------. 1 boincer umatlas      28161 Jan 13 15:30 heartbeat.json
[2026-01-13 15:31:43] -rw-------. 1 boincer umatlas         95 Jan 13 15:31 pilot_heartbeat.json
[2026-01-13 15:31:43] -rw-r--r--. 1 boincer umatlas       8192 Jan 13 15:31 boinc_mmap_file
[2026-01-13 15:31:43] -rw-r--r--. 1 boincer umatlas         30 Jan 13 15:31 wrapper_checkpoint.txt
[2026-01-13 15:31:43] -rw-------. 1 boincer umatlas       4825 Jan 13 15:31 pilotlog.txt
[2026-01-13 15:31:43] -rw-------. 1 boincer umatlas   15875494 Jan 13 15:31 log.48187943._000234.job.log.1
[2026-01-13 15:31:43] -rw-------. 1 boincer umatlas        353 Jan 13 15:31 output.list
[2026-01-13 15:31:43] -rw-r--r--. 1 boincer umatlas        620 Jan 13 15:31 runtime_log
[2026-01-13 15:31:43] -rw-------. 1 boincer umatlas   19179520 Jan 13 15:31 result.tar.gz
[2026-01-13 15:31:43] -rw-r--r--. 1 boincer umatlas       9354 Jan 13 15:31 runtime_log.err
[2026-01-13 15:31:43] -rw-------. 1 boincer umatlas        665 Jan 13 15:31 1pDMDmAmSz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQBnKDmupWjtm.diag
[2026-01-13 15:31:43] -rw-r--r--. 1 boincer umatlas      21002 Jan 13 15:31 stderr.txt
[2026-01-13 15:31:43] HITS file was successfully produced:
[2026-01-13 15:31:43] -rw-------. 1 boincer umatlas 1177960625 Jan 13 15:29 shared/HITS.pool.root.1
[2026-01-13 15:31:43]  *** Contents of shared directory: ***
[2026-01-13 15:31:43] total 1482832
[2026-01-13 15:31:43] -rw-r--r--. 2 boincer umatlas  320658665 Jan 12 03:50 ATLAS.root_0
[2026-01-13 15:31:43] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 03:50 start_atlas.sh
[2026-01-13 15:31:43] -rw-r--r--. 2 boincer umatlas     592613 Jan 12 03:50 input.tar.gz
[2026-01-13 15:31:43] -rw-------. 1 boincer umatlas 1177960625 Jan 13 15:29 HITS.pool.root.1
[2026-01-13 15:31:43] -rw-------. 1 boincer umatlas   19179520 Jan 13 15:31 result.tar.gz
15:31:45 (3731373): run_atlas exited; CPU time 320150.569528
15:31:45 (3731373): called boinc_finish(0)

</stderr_txt>
]]>

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