Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:49:25 (2346063): wrapper (7.7.26015): starting
03:49:25 (2346063): wrapper: running run_atlas (--nthreads 12)
[2026-01-12 03:49:25] Arguments: --nthreads 12
[2026-01-12 03:49:25] Threads: 12
[2026-01-12 03:49:25] Checking for CVMFS
[2026-01-12 03:49:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 03:49:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 03:49:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 03:49:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 03:49:27] 2.13.3.0 6723 27010 187316 155045 3 54 25350321 40960000 10638 16776704 0 19226395 99.588 19378795 38584 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 03:49:27] CVMFS is ok
[2026-01-12 03:49:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 03:49:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 03:49:27] Further information can be found at the LHC@home message board.
[2026-01-12 03:49:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 03:49:27] Checking for apptainer binary...
[2026-01-12 03:49:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 03:49:27] Running /usr/bin/apptainer --version
[2026-01-12 03:49:27] apptainer version 1.4.5-2.el9
[2026-01-12 03:49:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 03:49:28] c-210-35-2.aglt2.org
[2026-01-12 03:49:28] apptainer works
[2026-01-12 03:49:28] Set ATHENA_PROC_NUMBER=12
[2026-01-12 03:49:28] Set ATHENA_CORE_NUMBER=12
[2026-01-12 03:49:28] Starting ATLAS job with PandaID=6966849238
[2026-01-12 03:49:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 01:46:16]  *** The last 200 lines of the pilot log: ***
[2026-01-13 01:46:17] 2026-01-13 06:45:19,290 | INFO     | time since job start (78897s) is within the limit (349056.0s)
[2026-01-13 01:46:17] 2026-01-13 06:45:20,262 | INFO     | monitor loop #4899: job 0:6966849238 is in state 'finished'
[2026-01-13 01:46:17] 2026-01-13 06:45:20,263 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 01:46:17] 2026-01-13 06:45:21,297 | INFO     | time since job start (78899s) is within the limit (349056.0s)
[2026-01-13 01:46:17] 2026-01-13 06:45:22,777 | INFO     | monitor loop #4900: job 0:6966849238 is in state 'finished'
[2026-01-13 01:46:17] 2026-01-13 06:45:22,777 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 01:46:17] 2026-01-13 06:45:23,304 | INFO     | time since job start (78901s) is within the limit (349056.0s)
[2026-01-13 01:46:17] 2026-01-13 06:45:25,311 | INFO     | time since job start (78903s) is within the limit (349056.0s)
[2026-01-13 01:46:17] 2026-01-13 06:45:25,315 | INFO     | monitor loop #4901: job 0:6966849238 is in state 'finished'
[2026-01-13 01:46:17] 2026-01-13 06:45:25,326 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 01:46:17] 2026-01-13 06:45:27,371 | INFO     | time since job start (78905s) is within the limit (349056.0s)
[2026-01-13 01:46:17] 2026-01-13 06:45:27,902 | INFO     | monitor loop #4902: job 0:6966849238 is in state 'finished'
[2026-01-13 01:46:17] 2026-01-13 06:45:27,902 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 01:46:17] 2026-01-13 06:45:29,378 | INFO     | time since job start (78907s) is within the limit (349056.0s)
[2026-01-13 01:46:17] 2026-01-13 06:45:30,256 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-13 01:46:17] 2026-01-13 06:45:30,260 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2953.5690178571426
[2026-01-13 01:46:17] 2026-01-13 06:45:30,269 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6966849238/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 01:46:17] 2026-01-13 06:45:30,270 | INFO     | extracted standard info from prmon json
[2026-01-13 01:46:17] 2026-01-13 06:45:30,270 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 01:46:17] 2026-01-13 06:45:30,270 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 01:46:17] 2026-01-13 06:45:30,444 | INFO     | fitting pss+swap vs Time
[2026-01-13 01:46:17] 2026-01-13 06:45:30,480 | INFO     | monitor loop #4903: job 0:6966849238 is in state 'finished'
[2026-01-13 01:46:17] 2026-01-13 06:45:30,480 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 01:46:17] 2026-01-13 06:45:30,481 | INFO     | sum of square deviations: 668925255023.4331
[2026-01-13 01:46:17] 2026-01-13 06:45:30,842 | INFO     | sum of deviations: 2917095415991.04
[2026-01-13 01:46:17] 2026-01-13 06:45:30,843 | INFO     | mean x: 1768247243.9651704
[2026-01-13 01:46:17] 2026-01-13 06:45:30,843 | INFO     | mean y: 4211243.822755418
[2026-01-13 01:46:17] 2026-01-13 06:45:30,843 | INFO     | intersect: -7706883367.979416
[2026-01-13 01:46:17] 2026-01-13 06:45:30,844 | INFO     | chi2: 25.84998725889939
[2026-01-13 01:46:17] 2026-01-13 06:45:31,024 | INFO     | sum of square deviations: 661193648163.6289
[2026-01-13 01:46:17] 2026-01-13 06:45:31,196 | INFO     | sum of deviations: 3703181883998.674
[2026-01-13 01:46:17] 2026-01-13 06:45:31,196 | INFO     | mean x: 1768247091.4902875
[2026-01-13 01:46:17] 2026-01-13 06:45:31,196 | INFO     | mean y: 4226746.254079254
[2026-01-13 01:46:17] 2026-01-13 06:45:31,197 | INFO     | intersect: -9899287320.80737
[2026-01-13 01:46:17] 2026-01-13 06:45:31,198 | INFO     | chi2: 20.784031845896195
[2026-01-13 01:46:17] 2026-01-13 06:45:31,198 | INFO     | current chi2=20.784031845896195 (change=19.597516092620648 %)
[2026-01-13 01:46:17] 2026-01-13 06:45:31,198 | INFO     | right removable region: 1286
[2026-01-13 01:46:17] 2026-01-13 06:45:31,218 | INFO     | sum of square deviations: 661188552833.6292
[2026-01-13 01:46:17] 2026-01-13 06:45:31,369 | INFO     | sum of deviations: 2283401153679.1836
[2026-01-13 01:46:17] 2026-01-13 06:45:31,370 | INFO     | mean x: 1768247396.4902875
[2026-01-13 01:46:17] 2026-01-13 06:45:31,370 | INFO     | mean y: 4223731.3341103345
[2026-01-13 01:46:17] 2026-01-13 06:45:31,370 | INFO     | intersect: -6102382512.576613
[2026-01-13 01:46:17] 2026-01-13 06:45:31,392 | INFO     | chi2: 23.06822276390138
[2026-01-13 01:46:17] 2026-01-13 06:45:31,392 | INFO     | current chi2=23.06822276390138 (change=10.761183234395322 %)
[2026-01-13 01:46:17] 2026-01-13 06:45:31,392 | INFO     | left removable region: 10
[2026-01-13 01:46:17] 2026-01-13 06:45:31,394 | INFO     | sum of square deviations: 644385323602.4828
[2026-01-13 01:46:17] 2026-01-13 06:45:31,500 | INFO     | time since job start (78909s) is within the limit (349056.0s)
[2026-01-13 01:46:17] 2026-01-13 06:45:31,714 | INFO     | sum of deviations: 3058256024267.7935
[2026-01-13 01:46:17] 2026-01-13 06:45:31,714 | INFO     | mean x: 1768247366.0344827
[2026-01-13 01:46:17] 2026-01-13 06:45:31,755 | INFO     | mean y: 4244791.481974921
[2026-01-13 01:46:17] 2026-01-13 06:45:31,755 | INFO     | intersect: -8387866204.060535
[2026-01-13 01:46:17] 2026-01-13 06:45:31,757 | INFO     | chi2: 17.186217264364462
[2026-01-13 01:46:17] 2026-01-13 06:45:31,757 | INFO     | current memory leak: 4.75 B/s (using 1276 data points, chi2=17.19)
[2026-01-13 01:46:17] 2026-01-13 06:45:31,783 | INFO     | could have reported an average CPU frequency of 3077 MHz (46 samples)
[2026-01-13 01:46:17] 2026-01-13 06:45:31,783 | INFO     | ..............................
[2026-01-13 01:46:17] 2026-01-13 06:45:31,783 | INFO     | . Timing measurements:
[2026-01-13 01:46:17] 2026-01-13 06:45:31,783 | INFO     | . get job = 0 s
[2026-01-13 01:46:17] 2026-01-13 06:45:31,783 | INFO     | . initial setup = 3 s
[2026-01-13 01:46:17] 2026-01-13 06:45:31,784 | INFO     | . payload setup = 15 s
[2026-01-13 01:46:17] 2026-01-13 06:45:31,784 | INFO     | . stage-in = 0 s
[2026-01-13 01:46:17] 2026-01-13 06:45:31,784 | INFO     | . payload execution = 78785 s
[2026-01-13 01:46:17] 2026-01-13 06:45:31,784 | INFO     | . stage-out = 34 s
[2026-01-13 01:46:17] 2026-01-13 06:45:31,784 | INFO     | . log creation = 18 s
[2026-01-13 01:46:17] 2026-01-13 06:45:31,784 | INFO     | ..............................
[2026-01-13 01:46:17] 2026-01-13 06:45:32,264 | INFO     | 
[2026-01-13 01:46:17] 2026-01-13 06:45:32,506 | INFO     | job summary report
[2026-01-13 01:46:17] 2026-01-13 06:45:32,506 | INFO     | --------------------------------------------------
[2026-01-13 01:46:17] 2026-01-13 06:45:32,506 | INFO     | PanDA job id: 6966849238
[2026-01-13 01:46:17] 2026-01-13 06:45:32,506 | INFO     | task id: 48187943
[2026-01-13 01:46:17] 2026-01-13 06:45:32,506 | INFO     | errors: (none)
[2026-01-13 01:46:17] 2026-01-13 06:45:32,506 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 01:46:17] 2026-01-13 06:45:32,507 | INFO     | pilot state: finished 
[2026-01-13 01:46:17] 2026-01-13 06:45:32,507 | INFO     | transexitcode: 0
[2026-01-13 01:46:17] 2026-01-13 06:45:32,507 | INFO     | exeerrorcode: 0
[2026-01-13 01:46:17] 2026-01-13 06:45:32,507 | INFO     | exeerrordiag: 
[2026-01-13 01:46:17] 2026-01-13 06:45:32,507 | INFO     | exitcode: 0
[2026-01-13 01:46:17] 2026-01-13 06:45:32,507 | INFO     | exitmsg: OK
[2026-01-13 01:46:17] 2026-01-13 06:45:32,507 | INFO     | cpuconsumptiontime: 277346 s
[2026-01-13 01:46:17] 2026-01-13 06:45:32,507 | INFO     | nevents: 2050
[2026-01-13 01:46:17] 2026-01-13 06:45:32,507 | INFO     | neventsw: 0
[2026-01-13 01:46:17] 2026-01-13 06:45:32,507 | INFO     | pid: 2358573
[2026-01-13 01:46:17] 2026-01-13 06:45:32,507 | INFO     | pgrp: 2358573
[2026-01-13 01:46:17] 2026-01-13 06:45:32,507 | INFO     | corecount: 12
[2026-01-13 01:46:17] 2026-01-13 06:45:32,507 | INFO     | event service: False
[2026-01-13 01:46:17] 2026-01-13 06:45:32,507 | INFO     | sizes: {0: 2286810, 1: 2287009, 7: 2287303, 11: 2287331, 78808: 2371485, 78810: 2371484, 78846: 2379610, 78893: 2379800}
[2026-01-13 01:46:17] 2026-01-13 06:45:32,507 | INFO     | --------------------------------------------------
[2026-01-13 01:46:17] 2026-01-13 06:45:32,507 | INFO     | 
[2026-01-13 01:46:17] 2026-01-13 06:45:32,508 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-13 01:46:17] 2026-01-13 06:45:32,844 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,844 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,845 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,845 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,845 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,846 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,846 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,846 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,846 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,846 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,846 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,846 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,846 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,846 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,846 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,846 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,846 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,846 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 01:46:17] 2026-01-13 06:45:32,846 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,847 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 01:46:17] 2026-01-13 06:45:32,847 | INFO     | job 6966849238 has completed (purged errors)
[2026-01-13 01:46:17] 2026-01-13 06:45:32,847 | INFO     | overall cleanup function is called
[2026-01-13 01:46:17] 2026-01-13 06:45:33,965 | INFO     | --- collectZombieJob: --- 10, [2358573]
[2026-01-13 01:46:17] 2026-01-13 06:45:33,965 | INFO     | zombie collector waiting for pid 2358573
[2026-01-13 01:46:17] 2026-01-13 06:45:33,965 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 01:46:17] 2026-01-13 06:45:33,965 | INFO     | collected zombie processes
[2026-01-13 01:46:17] 2026-01-13 06:45:33,965 | INFO     | will attempt to kill all subprocesses of pid=2358573
[2026-01-13 01:46:17] 2026-01-13 06:45:36,724 | INFO     | process IDs to be killed: [2358573] (in reverse order)
[2026-01-13 01:46:17] 2026-01-13 06:45:37,513 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 01:46:17] 2026-01-13 06:45:37,513 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 01:46:17] 2026-01-13 06:45:37,558 | INFO     | did not find any defunct processes belonging to 2358573
[2026-01-13 01:46:17] 2026-01-13 06:45:37,602 | INFO     | did not find any defunct processes belonging to 2358573
[2026-01-13 01:46:17] 2026-01-13 06:45:37,623 | INFO     | ready for new job
[2026-01-13 01:46:17] 2026-01-13 06:45:37,623 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 01:46:17] 2026-01-13 06:45:37,822 | INFO     | ***************************************
[2026-01-13 01:46:17] 2026-01-13 06:45:37,822 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 01:46:17] 2026-01-13 06:45:37,822 | INFO     | ***************************************
[2026-01-13 01:46:17] 2026-01-13 06:45:37,822 | INFO     | 
[2026-01-13 01:46:17] 2026-01-13 06:45:38,179 | INFO     | architecture information:
[2026-01-13 01:46:17] 2026-01-13 06:45:38,276 | INFO     | executing command: cat /etc/os-release
[2026-01-13 01:46:17] 2026-01-13 06:45:38,541 | INFO     | cat /etc/os-release:
[2026-01-13 01:46:17] NAME="CentOS Linux"
[2026-01-13 01:46:17] VERSION="7 (Core)"
[2026-01-13 01:46:17] ID="centos"
[2026-01-13 01:46:17] ID_LIKE="rhel fedora"
[2026-01-13 01:46:17] VERSION_ID="7"
[2026-01-13 01:46:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 01:46:17] ANSI_COLOR="0;31"
[2026-01-13 01:46:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 01:46:17] HOME_URL="https://www.centos.org/"
[2026-01-13 01:46:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 01:46:17] 
[2026-01-13 01:46:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 01:46:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 01:46:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 01:46:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 01:46:17] 
[2026-01-13 01:46:17] 2026-01-13 06:45:38,542 | INFO     | ***************************************
[2026-01-13 01:46:17] 2026-01-13 06:45:39,045 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-13 01:46:17] 2026-01-13 06:45:39,115 | INFO     | sufficient remaining disk space (70369935360 B)
[2026-01-13 01:46:17] 2026-01-13 06:45:39,115 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 01:46:17] 2026-01-13 06:45:39,116 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 01:46:17] 2026-01-13 06:45:39,116 | INFO     | update_server=False
[2026-01-13 01:46:17] 2026-01-13 06:45:39,116 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 01:46:17] 2026-01-13 06:45:39,227 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 01:46:17] 2026-01-13 06:45:39,358 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 01:46:17] 2026-01-13 06:45:39,358 | INFO     | aborting loop
[2026-01-13 01:46:17] 2026-01-13 06:45:40,036 | INFO     | all data control threads have been joined
[2026-01-13 01:46:17] 2026-01-13 06:45:40,122 | INFO     | [job] retrieve thread has finished
[2026-01-13 01:46:17] 2026-01-13 06:45:40,207 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 01:46:17] 2026-01-13 06:45:40,212 | INFO     | [job] validate thread has finished
[2026-01-13 01:46:17] 2026-01-13 06:45:40,218 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 01:46:17] 2026-01-13 06:45:40,223 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 01:46:17] 2026-01-13 06:45:40,227 | INFO     | [data] copytool_in thread has finished
[2026-01-13 01:46:17] 2026-01-13 06:45:40,233 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 01:46:17] 2026-01-13 06:45:40,364 | INFO     | [job] job monitor thread has finished
[2026-01-13 01:46:17] 2026-01-13 06:45:40,420 | INFO     | all payload control threads have been joined
[2026-01-13 01:46:17] 2026-01-13 06:45:40,640 | INFO     | all job control threads have been joined
[2026-01-13 01:46:17] 2026-01-13 06:45:40,987 | INFO     | [payload] failed_post thread has finished
[2026-01-13 01:46:17] 2026-01-13 06:45:40,993 | INFO     | [payload] validate_post thread has finished
[2026-01-13 01:46:17] 2026-01-13 06:45:41,059 | INFO     | [data] control thread has finished
[2026-01-13 01:46:17] 2026-01-13 06:45:41,240 | INFO     | [data] copytool_out thread has finished
[2026-01-13 01:46:17] 2026-01-13 06:45:41,365 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 01:46:17] 2026-01-13 06:45:41,426 | INFO     | [payload] control thread has finished
[2026-01-13 01:46:17] 2026-01-13 06:45:41,646 | INFO     | [job] control thread has finished
[2026-01-13 01:46:17] 2026-01-13 06:45:41,982 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 01:46:17] 2026-01-13 06:45:42,371 | INFO     | [job] queue monitor thread has finished
[2026-01-13 01:46:17] 2026-01-13 06:45:44,349 | INFO     | [monitor] cgroup control has ended
[2026-01-13 01:46:17] 2026-01-13 06:45:45,991 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 01:46:17] 2026-01-13 06:45:47,593 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140072762750784)>', '<ExcThread(monitor, started 140072414332672)>']
[2026-01-13 01:46:17] 2026-01-13 06:45:52,643 | INFO     | all workflow threads have been joined
[2026-01-13 01:46:17] 2026-01-13 06:45:52,643 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 01:46:17] 2026-01-13 06:45:52,643 | INFO     | traces error code: 0
[2026-01-13 01:46:17] 2026-01-13 06:45:52,644 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 01:46:17] 2026-01-13 06:46:12,107 | INFO     | PID=2351511 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 01:46:17] 2026-01-13 06:46:12,108 | INFO     | .. there are 11 such processes running
[2026-01-13 01:46:17] 2026-01-13 06:46:12,108 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 01:46:17] 2026-01-13 06:46:12,108 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 01:46:17] 2026-01-13 06:46:12,108 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 01:46:17] 2026-01-13 06:46:12,108 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 01:46:17] 2026-01-13 06:46:12,108 | CRITICAL | thread 'MainThread' is not alive
[2026-01-13 01:46:17] 2026-01-13 06:46:12,108 | INFO     | [monitor] control thread has ended
[2026-01-13 01:46:17] 2026-01-13 06:46:16,160 [wrapper] ==== pilot stdout END ====
[2026-01-13 01:46:17] 2026-01-13 06:46:16,163 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 01:46:17] 2026-01-13 06:46:16,202 [wrapper] pilotpid: 2351511
[2026-01-13 01:46:17] 2026-01-13 06:46:16,235 [wrapper] Pilot exit status: 0
[2026-01-13 01:46:17] 2026-01-13 06:46:16,343 [wrapper] pandaids: 6966849238
[2026-01-13 01:46:17] 2026-01-13 06:46:16,440 [wrapper] cleanup supervisor_pilot  433038 2351512
[2026-01-13 01:46:17] 2026-01-13 06:46:16,443 [wrapper] Test setup, not cleaning
[2026-01-13 01:46:17] 2026-01-13 06:46:16,462 [wrapper] apfmon messages muted
[2026-01-13 01:46:17] 2026-01-13 06:46:16,489 [wrapper] ==== wrapper stdout END ====
[2026-01-13 01:46:17] 2026-01-13 06:46:16,512 [wrapper] ==== wrapper stderr END ====
[2026-01-13 01:46:17]  *** Error codes and diagnostics ***
[2026-01-13 01:46:17]     "exeErrorCode": 0,
[2026-01-13 01:46:17]     "exeErrorDiag": "",
[2026-01-13 01:46:17]     "pilotErrorCode": 0,
[2026-01-13 01:46:17]     "pilotErrorDiag": "",
[2026-01-13 01:46:17]  *** Listing of results directory ***
[2026-01-13 01:46:17] total 1813872
[2026-01-13 01:46:17] -rw-r--r--. 1 boincer umatlas     579449 Jan 12 03:42 pilot3.tar.gz
[2026-01-13 01:46:17] -rwx------. 1 boincer umatlas      36322 Jan 12 03:47 runpilot2-wrapper.sh
[2026-01-13 01:46:17] -rw-r--r--. 1 boincer umatlas       5112 Jan 12 03:47 queuedata.json
[2026-01-13 01:46:17] -rw-r--r--. 1 boincer umatlas        100 Jan 12 03:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 01:46:17] -rwxr-xr-x. 1 boincer umatlas       7986 Jan 12 03:49 run_atlas
[2026-01-13 01:46:17] -rw-r--r--. 1 boincer umatlas        105 Jan 12 03:49 job.xml
[2026-01-13 01:46:17] -rw-r--r--. 2 boincer umatlas  320335351 Jan 12 03:49 EVNT.48118027._000097.pool.root.1
[2026-01-13 01:46:17] -rw-r--r--. 2 boincer umatlas  322310549 Jan 12 03:49 EVNT.48118027._000098.pool.root.1
[2026-01-13 01:46:17] -rw-r--r--. 2 boincer umatlas      15897 Jan 12 03:49 start_atlas.sh
[2026-01-13 01:46:17] drwxrwx--x. 2 boincer umatlas       4096 Jan 12 03:49 shared
[2026-01-13 01:46:17] -rw-r--r--. 2 boincer umatlas     592700 Jan 12 03:49 input.tar.gz
[2026-01-13 01:46:17] -rw-r--r--. 1 boincer umatlas          0 Jan 12 03:49 boinc_lockfile
[2026-01-13 01:46:17] -rw-r--r--. 1 boincer umatlas       3434 Jan 12 03:49 pandaJob.out
[2026-01-13 01:46:17] -rw-------. 1 boincer umatlas         57 Jan 12 03:49 setup.sh.local
[2026-01-13 01:46:17] -rw-------. 1 boincer umatlas     987688 Jan 12 03:50 agis_schedconf.cvmfs.json
[2026-01-13 01:46:17] drwx------. 5 boincer umatlas       4096 Jan 12 03:50 pilot3
[2026-01-13 01:46:17] -rw-r--r--. 1 boincer umatlas        533 Jan 13 01:12 boinc_task_state.xml
[2026-01-13 01:46:17] -rw-------. 1 boincer umatlas 1184172443 Jan 13 01:38 HITS.48187943._000474.pool.root.1
[2026-01-13 01:46:17] -rw-r--r--. 1 boincer umatlas       6843 Jan 13 01:39 init_data.xml
[2026-01-13 01:46:17] -rw-------. 1 boincer umatlas       1054 Jan 13 01:44 memory_monitor_summary.json
[2026-01-13 01:46:17] -rw-------. 1 boincer umatlas    1516240 Jan 13 01:44 agis_ddmendpoints.agis.ALL.json
[2026-01-13 01:46:17] -rw-------. 1 boincer umatlas    3182548 Jan 13 01:44 log.48187943._000474.job.log.tgz.1
[2026-01-13 01:46:17] -rw-------. 1 boincer umatlas         95 Jan 13 01:45 pilot_heartbeat.json
[2026-01-13 01:46:17] -rw-------. 1 boincer umatlas      29595 Jan 13 01:45 heartbeat.json
[2026-01-13 01:46:17] -rw-------. 1 boincer umatlas        893 Jan 13 01:46 pilotlog.txt
[2026-01-13 01:46:17] -rw-r--r--. 1 boincer umatlas         29 Jan 13 01:46 wrapper_checkpoint.txt
[2026-01-13 01:46:17] -rw-r--r--. 1 boincer umatlas       8192 Jan 13 01:46 boinc_mmap_file
[2026-01-13 01:46:17] -rw-------. 1 boincer umatlas   10129104 Jan 13 01:46 log.48187943._000474.job.log.1
[2026-01-13 01:46:17] -rw-------. 1 boincer umatlas        353 Jan 13 01:46 output.list
[2026-01-13 01:46:17] -rw-r--r--. 1 boincer umatlas        620 Jan 13 01:46 runtime_log
[2026-01-13 01:46:17] -rw-------. 1 boincer umatlas   13352960 Jan 13 01:46 result.tar.gz
[2026-01-13 01:46:17] -rw-------. 1 boincer umatlas        662 Jan 13 01:46 zKqLDm2kSz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNAnKDmrFsi3n.diag
[2026-01-13 01:46:17] -rw-r--r--. 1 boincer umatlas       9407 Jan 13 01:46 runtime_log.err
[2026-01-13 01:46:17] -rw-r--r--. 1 boincer umatlas      21648 Jan 13 01:46 stderr.txt
[2026-01-13 01:46:17] HITS file was successfully produced:
[2026-01-13 01:46:17] -rw-------. 1 boincer umatlas 1184172443 Jan 13 01:38 shared/HITS.pool.root.1
[2026-01-13 01:46:17]  *** Contents of shared directory: ***
[2026-01-13 01:46:17] total 1797656
[2026-01-13 01:46:17] -rw-r--r--. 2 boincer umatlas  320335351 Jan 12 03:49 ATLAS.root_0
[2026-01-13 01:46:17] -rw-r--r--. 2 boincer umatlas  322310549 Jan 12 03:49 ATLAS.root_1
[2026-01-13 01:46:17] -rw-r--r--. 2 boincer umatlas      15897 Jan 12 03:49 start_atlas.sh
[2026-01-13 01:46:17] -rw-r--r--. 2 boincer umatlas     592700 Jan 12 03:49 input.tar.gz
[2026-01-13 01:46:17] -rw-------. 1 boincer umatlas 1184172443 Jan 13 01:38 HITS.pool.root.1
[2026-01-13 01:46:17] -rw-------. 1 boincer umatlas   13352960 Jan 13 01:46 result.tar.gz
01:46:18 (2346063): run_atlas exited; CPU time 277482.766170
01:46:18 (2346063): called boinc_finish(0)

</stderr_txt>
]]>

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