Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:46:40 (2508127): wrapper (7.7.26015): starting
03:46:40 (2508127): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 03:46:40] Arguments: --nthreads 8
[2026-01-12 03:46:40] Threads: 8
[2026-01-12 03:46:40] Checking for CVMFS
[2026-01-12 03:46:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 03:46:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 03:46:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 03:46:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 03:46:40] 2.13.3.0 12210 26376 172248 155045 3 371 26019362 40955880 26656 16776704 0 89143520 99.767 52328105 47294 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 03:46:40] CVMFS is ok
[2026-01-12 03:46:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 03:46:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 03:46:40] Further information can be found at the LHC@home message board.
[2026-01-12 03:46:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 03:46:40] Checking for apptainer binary...
[2026-01-12 03:46:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 03:46:40] Running /usr/bin/apptainer --version
[2026-01-12 03:46:41] apptainer version 1.4.5-2.el9
[2026-01-12 03:46:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 03:46:41] c-208-37.aglt2.org
[2026-01-12 03:46:41] apptainer works
[2026-01-12 03:46:41] Set ATHENA_PROC_NUMBER=8
[2026-01-12 03:46:41] Set ATHENA_CORE_NUMBER=8
[2026-01-12 03:46:41] Starting ATLAS job with PandaID=6966839740
[2026-01-12 03:46:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 13:21:36]  *** The last 200 lines of the pilot log: ***
[2026-01-12 13:21:36] 2026-01-12 18:09:47,226 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-12 13:21:36] 2026-01-12 18:09:47,231 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3787.6338593750006
[2026-01-12 13:21:36] 2026-01-12 18:09:47,243 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6966839740/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 13:21:36] 2026-01-12 18:09:47,244 | INFO     | extracted standard info from prmon json
[2026-01-12 13:21:36] 2026-01-12 18:09:47,244 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 13:21:36] 2026-01-12 18:09:47,244 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 13:21:36] 2026-01-12 18:09:47,249 | INFO     | fitting pss+swap vs Time
[2026-01-12 13:21:36] 2026-01-12 18:09:47,250 | INFO     | sum of square deviations: 52445101613.884224
[2026-01-12 13:21:36] 2026-01-12 18:09:47,254 | INFO     | sum of deviations: 724810744761.8203
[2026-01-12 13:21:36] 2026-01-12 18:09:47,254 | INFO     | mean x: 1768224499.0144665
[2026-01-12 13:21:36] 2026-01-12 18:09:47,254 | INFO     | mean y: 3406672.5226039784
[2026-01-12 13:21:36] 2026-01-12 18:09:47,254 | INFO     | intersect: -24434111352.94493
[2026-01-12 13:21:36] 2026-01-12 18:09:47,254 | INFO     | chi2: 5.6413343796917825
[2026-01-12 13:21:36] 2026-01-12 18:09:47,254 | INFO     | sum of square deviations: 51036039388.0346
[2026-01-12 13:21:36] 2026-01-12 18:09:47,258 | INFO     | sum of deviations: 938314011451.9918
[2026-01-12 13:21:36] 2026-01-12 18:09:47,258 | INFO     | mean x: 1768224346.5419707
[2026-01-12 13:21:36] 2026-01-12 18:09:47,258 | INFO     | mean y: 3429769.0437956206
[2026-01-12 13:21:36] 2026-01-12 18:09:47,258 | INFO     | intersect: -32505943992.037304
[2026-01-12 13:21:36] 2026-01-12 18:09:47,259 | INFO     | chi2: 2.611991731797562
[2026-01-12 13:21:36] 2026-01-12 18:09:47,259 | INFO     | current chi2=2.611991731797562 (change=53.69904430411959 %)
[2026-01-12 13:21:36] 2026-01-12 18:09:47,259 | INFO     | sum of square deviations: 49651998896.93913
[2026-01-12 13:21:36] 2026-01-12 18:09:47,262 | INFO     | sum of deviations: 933136882101.47
[2026-01-12 13:21:36] 2026-01-12 18:09:47,262 | INFO     | mean x: 1768224194.044199
[2026-01-12 13:21:36] 2026-01-12 18:09:47,263 | INFO     | mean y: 3429190.0220994474
[2026-01-12 13:21:36] 2026-01-12 18:09:47,263 | INFO     | intersect: -33227764879.558544
[2026-01-12 13:21:36] 2026-01-12 18:09:47,263 | INFO     | chi2: 2.569964048369787
[2026-01-12 13:21:36] 2026-01-12 18:09:47,263 | INFO     | current chi2=2.569964048369787 (change=1.609028195462609 %)
[2026-01-12 13:21:36] 2026-01-12 18:09:47,263 | INFO     | right removable region: 542
[2026-01-12 13:21:36] 2026-01-12 18:09:47,263 | INFO     | sum of square deviations: 51035056012.11592
[2026-01-12 13:21:36] 2026-01-12 18:09:47,267 | INFO     | sum of deviations: 536440289352.45306
[2026-01-12 13:21:36] 2026-01-12 18:09:47,267 | INFO     | mean x: 1768224651.5401459
[2026-01-12 13:21:36] 2026-01-12 18:09:47,267 | INFO     | mean y: 3427006.8430656935
[2026-01-12 13:21:36] 2026-01-12 18:09:47,267 | INFO     | intersect: -18582757036.672974
[2026-01-12 13:21:36] 2026-01-12 18:09:47,268 | INFO     | chi2: 3.2400535757577074
[2026-01-12 13:21:36] 2026-01-12 18:09:47,268 | INFO     | current chi2=3.2400535757577074 (change=42.56583003798598 %)
[2026-01-12 13:21:36] 2026-01-12 18:09:47,268 | INFO     | sum of square deviations: 49650899448.93914
[2026-01-12 13:21:36] 2026-01-12 18:09:47,271 | INFO     | sum of deviations: 492949648442.2046
[2026-01-12 13:21:36] 2026-01-12 18:09:47,271 | INFO     | mean x: 1768224804.044199
[2026-01-12 13:21:36] 2026-01-12 18:09:47,271 | INFO     | mean y: 3431795.3664825046
[2026-01-12 13:21:36] 2026-01-12 18:09:47,272 | INFO     | intersect: -17552056729.403797
[2026-01-12 13:21:36] 2026-01-12 18:09:47,272 | INFO     | chi2: 3.191674448247067
[2026-01-12 13:21:36] 2026-01-12 18:09:47,272 | INFO     | current chi2=3.191674448247067 (change=1.4931582574009343 %)
[2026-01-12 13:21:36] 2026-01-12 18:09:47,272 | INFO     | left removable region: 20
[2026-01-12 13:21:36] 2026-01-12 18:09:47,272 | INFO     | sum of square deviations: 44110756315.37152
[2026-01-12 13:21:36] 2026-01-12 18:09:47,275 | INFO     | sum of deviations: 642205796969.3026
[2026-01-12 13:21:36] 2026-01-12 18:09:47,276 | INFO     | mean x: 1768224773.6168582
[2026-01-12 13:21:36] 2026-01-12 18:09:47,276 | INFO     | mean y: 3461589.30651341
[2026-01-12 13:21:36] 2026-01-12 18:09:47,276 | INFO     | intersect: -25740014488.10916
[2026-01-12 13:21:36] 2026-01-12 18:09:47,276 | INFO     | chi2: 0.07120569264674498
[2026-01-12 13:21:36] 2026-01-12 18:09:47,276 | INFO     | current memory leak: 14.56 B/s (using 522 data points, chi2=0.07)
[2026-01-12 13:21:36] 2026-01-12 18:09:47,277 | INFO     | could have reported an average CPU frequency of 3792 MHz (22 samples)
[2026-01-12 13:21:36] 2026-01-12 18:09:47,277 | INFO     | ..............................
[2026-01-12 13:21:36] 2026-01-12 18:09:47,277 | INFO     | . Timing measurements:
[2026-01-12 13:21:36] 2026-01-12 18:09:47,277 | INFO     | . get job = 0 s
[2026-01-12 13:21:36] 2026-01-12 18:09:47,277 | INFO     | . initial setup = 2 s
[2026-01-12 13:21:36] 2026-01-12 18:09:47,277 | INFO     | . payload setup = 15 s
[2026-01-12 13:21:36] 2026-01-12 18:09:47,277 | INFO     | . stage-in = 0 s
[2026-01-12 13:21:36] 2026-01-12 18:09:47,277 | INFO     | . payload execution = 33723 s
[2026-01-12 13:21:36] 2026-01-12 18:09:47,277 | INFO     | . stage-out = 3 s
[2026-01-12 13:21:36] 2026-01-12 18:09:47,277 | INFO     | . log creation = 0 s
[2026-01-12 13:21:36] 2026-01-12 18:09:47,277 | INFO     | ..............................
[2026-01-12 13:21:36] 2026-01-12 18:09:47,340 | INFO     | 
[2026-01-12 13:21:36] 2026-01-12 18:09:47,340 | INFO     | job summary report
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | --------------------------------------------------
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | PanDA job id: 6966839740
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | task id: 48187943
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | errors: (none)
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | pilot state: finished 
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | transexitcode: 0
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | exeerrorcode: 0
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | exeerrordiag: 
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | exitcode: 0
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | exitmsg: OK
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | cpuconsumptiontime: 165722 s
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | nevents: 2050
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | neventsw: 0
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | pid: 2552716
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | pgrp: 2552716
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | corecount: 8
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | event service: False
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | sizes: {0: 2284388, 1: 2284643, 7: 2284905, 11: 2284933, 33742: 2345601, 33746: 2354783, 33754: 2354973}
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | --------------------------------------------------
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | 
[2026-01-12 13:21:36] 2026-01-12 18:09:47,341 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-12 13:21:36] 2026-01-12 18:09:47,387 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,387 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | job 6966839740 has completed (purged errors)
[2026-01-12 13:21:36] 2026-01-12 18:09:47,388 | INFO     | overall cleanup function is called
[2026-01-12 13:21:36] 2026-01-12 18:09:47,854 | INFO     | PID=2518087 has CPU usage=14.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-12 13:21:36] 2026-01-12 18:09:47,854 | INFO     | .. there are 27 such processes running
[2026-01-12 13:21:36] 2026-01-12 18:09:48,414 | INFO     | --- collectZombieJob: --- 10, [2552716]
[2026-01-12 13:21:36] 2026-01-12 18:09:48,414 | INFO     | zombie collector waiting for pid 2552716
[2026-01-12 13:21:36] 2026-01-12 18:09:48,414 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 13:21:36] 2026-01-12 18:09:48,414 | INFO     | collected zombie processes
[2026-01-12 13:21:36] 2026-01-12 18:09:48,414 | INFO     | will attempt to kill all subprocesses of pid=2552716
[2026-01-12 13:21:36] 2026-01-12 18:09:48,806 | INFO     | process IDs to be killed: [2552716] (in reverse order)
[2026-01-12 13:21:36] 2026-01-12 18:09:48,963 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 13:21:36] 2026-01-12 18:09:48,963 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 13:21:36] 2026-01-12 18:09:48,985 | INFO     | did not find any defunct processes belonging to 2552716
[2026-01-12 13:21:36] 2026-01-12 18:09:49,003 | INFO     | did not find any defunct processes belonging to 2552716
[2026-01-12 13:21:36] 2026-01-12 18:09:49,003 | INFO     | ready for new job
[2026-01-12 13:21:36] 2026-01-12 18:09:49,003 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 13:21:36] 2026-01-12 18:09:49,006 | INFO     | ***************************************
[2026-01-12 13:21:36] 2026-01-12 18:09:49,006 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 13:21:36] 2026-01-12 18:09:49,006 | INFO     | ***************************************
[2026-01-12 13:21:36] 2026-01-12 18:09:49,006 | INFO     | 
[2026-01-12 13:21:36] 2026-01-12 18:09:49,010 | INFO     | architecture information:
[2026-01-12 13:21:36] 2026-01-12 18:09:49,010 | INFO     | executing command: cat /etc/os-release
[2026-01-12 13:21:36] 2026-01-12 18:09:49,023 | INFO     | cat /etc/os-release:
[2026-01-12 13:21:36] NAME="CentOS Linux"
[2026-01-12 13:21:36] VERSION="7 (Core)"
[2026-01-12 13:21:36] ID="centos"
[2026-01-12 13:21:36] ID_LIKE="rhel fedora"
[2026-01-12 13:21:36] VERSION_ID="7"
[2026-01-12 13:21:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 13:21:36] ANSI_COLOR="0;31"
[2026-01-12 13:21:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 13:21:36] HOME_URL="https://www.centos.org/"
[2026-01-12 13:21:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 13:21:36] 
[2026-01-12 13:21:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 13:21:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 13:21:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 13:21:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 13:21:36] 
[2026-01-12 13:21:36] 2026-01-12 18:09:49,023 | INFO     | ***************************************
[2026-01-12 13:21:36] 2026-01-12 18:09:49,527 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-12 13:21:36] 2026-01-12 18:09:49,546 | INFO     | sufficient remaining disk space (165936103424 B)
[2026-01-12 13:21:36] 2026-01-12 18:09:49,558 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 13:21:36] 2026-01-12 18:09:49,558 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 13:21:36] 2026-01-12 18:09:49,558 | INFO     | update_server=False
[2026-01-12 13:21:36] 2026-01-12 18:09:49,558 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 13:21:36] 2026-01-12 18:09:50,007 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-12 13:21:36] 2026-01-12 18:09:50,007 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-12 13:21:36] 2026-01-12 18:09:50,007 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 13:21:36] 2026-01-12 18:09:50,007 | INFO     | will abort loop
[2026-01-12 13:21:36] 2026-01-12 18:09:50,108 | INFO     | all data control threads have been joined
[2026-01-12 13:21:36] 2026-01-12 18:09:50,344 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 13:21:36] 2026-01-12 18:09:50,540 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 13:21:36] 2026-01-12 18:09:50,564 | INFO     | [job] retrieve thread has finished
[2026-01-12 13:21:36] 2026-01-12 18:09:50,654 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 13:21:36] 2026-01-12 18:09:50,686 | INFO     | all payload control threads have been joined
[2026-01-12 13:21:36] 2026-01-12 18:09:50,837 | INFO     | [job] validate thread has finished
[2026-01-12 13:21:36] 2026-01-12 18:09:50,980 | INFO     | all job control threads have been joined
[2026-01-12 13:21:36] 2026-01-12 18:09:51,012 | INFO     | [job] job monitor thread has finished
[2026-01-12 13:21:36] 2026-01-12 18:09:51,112 | INFO     | [data] control thread has finished
[2026-01-12 13:21:36] 2026-01-12 18:09:51,132 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 13:21:36] 2026-01-12 18:09:51,136 | INFO     | [data] copytool_in thread has finished
[2026-01-12 13:21:36] 2026-01-12 18:09:51,282 | INFO     | [payload] validate_post thread has finished
[2026-01-12 13:21:36] 2026-01-12 18:09:51,691 | INFO     | [payload] control thread has finished
[2026-01-12 13:21:36] 2026-01-12 18:09:51,754 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 13:21:36] 2026-01-12 18:09:51,842 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 13:21:36] 2026-01-12 18:09:51,986 | INFO     | [job] control thread has finished
[2026-01-12 13:21:36] 2026-01-12 18:09:52,043 | INFO     | [payload] failed_post thread has finished
[2026-01-12 13:21:36] 2026-01-12 18:09:52,314 | INFO     | [monitor] cgroup control has ended
[2026-01-12 13:21:36] 2026-01-12 18:09:52,350 | INFO     | [data] copytool_out thread has finished
[2026-01-12 13:21:36] 2026-01-12 18:09:52,354 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 13:21:36] 2026-01-12 18:09:53,359 | INFO     | [job] queue monitor thread has finished
[2026-01-12 13:21:36] 2026-01-12 18:09:54,546 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 13:21:36] 2026-01-12 18:09:55,157 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139739095492416)>', '<ExcThread(monitor, started 139738749060864)>']
[2026-01-12 13:21:36] 2026-01-12 18:10:00,183 | INFO     | all workflow threads have been joined
[2026-01-12 13:21:36] 2026-01-12 18:10:00,183 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 13:21:36] 2026-01-12 18:10:00,183 | INFO     | traces error code: 0
[2026-01-12 13:21:36] 2026-01-12 18:10:00,184 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 13:21:36] 2026-01-12 18:10:20,411 | INFO     | PID=2518087 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-12 13:21:36] 2026-01-12 18:10:20,412 | INFO     | .. there are 26 such processes running
[2026-01-12 13:21:36] 2026-01-12 18:10:20,412 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 13:21:36] 2026-01-12 18:10:20,412 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 13:21:36] 2026-01-12 18:10:20,412 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 13:21:36] 2026-01-12 18:10:20,412 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 13:21:36] 2026-01-12 18:10:20,412 | INFO     | [monitor] control thread has ended
[2026-01-12 13:21:36] 2026-01-12 18:10:20,508 [wrapper] ==== pilot stdout END ====
[2026-01-12 13:21:36] 2026-01-12 18:10:20,521 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 13:21:36] 2026-01-12 18:10:20,528 [wrapper] pilotpid: 2518087
[2026-01-12 13:21:36] 2026-01-12 18:10:20,550 [wrapper] Pilot exit status: 0
[2026-01-12 13:21:36] 2026-01-12 18:10:20,594 [wrapper] pandaids: 6966839740
[2026-01-12 13:21:36] 2026-01-12 18:10:20,715 [wrapper] cleanup supervisor_pilot 1324021 2518088
[2026-01-12 13:21:36] 2026-01-12 18:10:20,719 [wrapper] Test setup, not cleaning
[2026-01-12 13:21:36] 2026-01-12 18:10:20,723 [wrapper] apfmon messages muted
[2026-01-12 13:21:36] 2026-01-12 18:10:20,730 [wrapper] ==== wrapper stdout END ====
[2026-01-12 13:21:36] 2026-01-12 18:10:20,737 [wrapper] ==== wrapper stderr END ====
[2026-01-12 13:21:36]  *** Error codes and diagnostics ***
[2026-01-12 13:21:36]     "exeErrorCode": 0,
[2026-01-12 13:21:36]     "exeErrorDiag": "",
[2026-01-12 13:21:36]     "pilotErrorCode": 0,
[2026-01-12 13:21:36]     "pilotErrorDiag": "",
[2026-01-12 13:21:36]  *** Listing of results directory ***
[2026-01-12 13:21:36] total 1494948
[2026-01-12 13:21:36] -rw-r--r--. 1 boincer umatlas     579449 Jan 12 03:42 pilot3.tar.gz
[2026-01-12 13:21:36] -rwx------. 1 boincer umatlas      36322 Jan 12 03:45 runpilot2-wrapper.sh
[2026-01-12 13:21:36] -rw-r--r--. 1 boincer umatlas       5112 Jan 12 03:45 queuedata.json
[2026-01-12 13:21:36] -rw-r--r--. 1 boincer umatlas        100 Jan 12 03:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 13:21:36] -rwxr-xr-x. 1 boincer umatlas       7986 Jan 12 03:46 run_atlas
[2026-01-12 13:21:36] -rw-r--r--. 1 boincer umatlas        105 Jan 12 03:46 job.xml
[2026-01-12 13:21:36] -rw-r--r--. 2 boincer umatlas  323371037 Jan 12 03:46 EVNT.48118027._000008.pool.root.1
[2026-01-12 13:21:36] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 03:46 start_atlas.sh
[2026-01-12 13:21:36] drwxrwx--x. 2 boincer umatlas       4096 Jan 12 03:46 shared
[2026-01-12 13:21:36] -rw-r--r--. 2 boincer umatlas     592603 Jan 12 03:46 input.tar.gz
[2026-01-12 13:21:36] -rw-r--r--. 1 boincer umatlas          0 Jan 12 03:46 boinc_lockfile
[2026-01-12 13:21:36] -rw-r--r--. 1 boincer umatlas       2893 Jan 12 03:46 pandaJob.out
[2026-01-12 13:21:36] -rw-------. 1 boincer umatlas         57 Jan 12 03:46 setup.sh.local
[2026-01-12 13:21:36] -rw-------. 1 boincer umatlas     987688 Jan 12 03:46 agis_schedconf.cvmfs.json
[2026-01-12 13:21:36] drwx------. 5 boincer umatlas       4096 Jan 12 03:46 pilot3
[2026-01-12 13:21:36] -rw-r--r--. 1 boincer umatlas        532 Jan 12 13:03 boinc_task_state.xml
[2026-01-12 13:21:36] -rw-------. 1 boincer umatlas 1190241935 Jan 12 13:09 HITS.48187943._000038.pool.root.1
[2026-01-12 13:21:36] -rw-------. 1 boincer umatlas       1062 Jan 12 13:09 memory_monitor_summary.json
[2026-01-12 13:21:36] -rw-------. 1 boincer umatlas    1516240 Jan 12 13:09 agis_ddmendpoints.agis.ALL.json
[2026-01-12 13:21:36] -rw-------. 1 boincer umatlas    2175322 Jan 12 13:09 log.48187943._000038.job.log.tgz.1
[2026-01-12 13:21:36] -rw-------. 1 boincer umatlas         95 Jan 12 13:09 pilot_heartbeat.json
[2026-01-12 13:21:36] -rw-------. 1 boincer umatlas      28105 Jan 12 13:09 heartbeat.json
[2026-01-12 13:21:36] -rw-------. 1 boincer umatlas        823 Jan 12 13:10 pilotlog.txt
[2026-01-12 13:21:36] -rw-------. 1 boincer umatlas    4449999 Jan 12 13:10 log.48187943._000038.job.log.1
[2026-01-12 13:21:36] -rw-------. 1 boincer umatlas        353 Jan 12 13:10 output.list
[2026-01-12 13:21:36] -rw-r--r--. 1 boincer umatlas        620 Jan 12 13:10 runtime_log
[2026-01-12 13:21:36] -rw-------. 1 boincer umatlas    6666240 Jan 12 13:10 result.tar.gz
[2026-01-12 13:21:36] -rw-r--r--. 1 boincer umatlas       9343 Jan 12 13:10 runtime_log.err
[2026-01-12 13:21:36] -rw-------. 1 boincer umatlas        664 Jan 12 13:10 N2pKDmFjSz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmF7mKDmmiWnFn.diag
[2026-01-12 13:21:36] -rw-r--r--. 1 boincer umatlas       7186 Jan 12 13:21 init_data.xml
[2026-01-12 13:21:36] -rw-r--r--. 1 boincer umatlas         29 Jan 12 13:21 wrapper_checkpoint.txt
[2026-01-12 13:21:36] -rw-r--r--. 1 boincer umatlas       8192 Jan 12 13:21 boinc_mmap_file
[2026-01-12 13:21:36] -rw-r--r--. 1 boincer umatlas      21272 Jan 12 13:21 stderr.txt
[2026-01-12 13:21:36] HITS file was successfully produced:
[2026-01-12 13:21:36] -rw-------. 1 boincer umatlas 1190241935 Jan 12 13:09 shared/HITS.pool.root.1
[2026-01-12 13:21:36]  *** Contents of shared directory: ***
[2026-01-12 13:21:36] total 1485260
[2026-01-12 13:21:36] -rw-r--r--. 2 boincer umatlas  323371037 Jan 12 03:46 ATLAS.root_0
[2026-01-12 13:21:36] -rw-r--r--. 2 boincer umatlas      15847 Jan 12 03:46 start_atlas.sh
[2026-01-12 13:21:36] -rw-r--r--. 2 boincer umatlas     592603 Jan 12 03:46 input.tar.gz
[2026-01-12 13:21:36] -rw-------. 1 boincer umatlas 1190241935 Jan 12 13:09 HITS.pool.root.1
[2026-01-12 13:21:36] -rw-------. 1 boincer umatlas    6666240 Jan 12 13:10 result.tar.gz
13:21:37 (2508127): run_atlas exited; CPU time 166250.583817
13:21:37 (2508127): called boinc_finish(0)

</stderr_txt>
]]>

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