Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:18:32 (286215): wrapper (7.7.26015): starting
02:18:32 (286215): wrapper: running run_atlas (--nthreads 9)
[2026-01-12 02:18:32] Arguments: --nthreads 9
[2026-01-12 02:18:32] Threads: 9
[2026-01-12 02:18:32] Checking for CVMFS
[2026-01-12 02:18:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 02:18:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 02:18:32] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 02:18:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 02:18:33] 2.13.3.0 12846 97373 163548 155043 0 68 25238535 32935937 17330 16776704 0 426637990 99.470 611315704 38399 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-12 02:18:33] CVMFS is ok
[2026-01-12 02:18:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 02:18:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 02:18:33] Further information can be found at the LHC@home message board.
[2026-01-12 02:18:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 02:18:33] Checking for apptainer binary...
[2026-01-12 02:18:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 02:18:33] Running /usr/bin/apptainer --version
[2026-01-12 02:18:33] apptainer version 1.4.5-2.el9
[2026-01-12 02:18:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 02:18:33] c7-16-9.aglt2.org
[2026-01-12 02:18:33] apptainer works
[2026-01-12 02:18:33] Set ATHENA_PROC_NUMBER=9
[2026-01-12 02:18:33] Set ATHENA_CORE_NUMBER=9
[2026-01-12 02:18:33] Starting ATLAS job with PandaID=6966776225
[2026-01-12 02:18:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 03:33:04]  *** The last 200 lines of the pilot log: ***
[2026-01-12 03:33:04]  protocol_id=None
[2026-01-12 03:33:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-12 03:33:04]  replicas=None
[2026-01-12 03:33:04]  scope=mc16_13TeV
[2026-01-12 03:33:04]  status=None
[2026-01-12 03:33:04]  status_code=0
[2026-01-12 03:33:04]  storage_token=
[2026-01-12 03:33:04]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6966776225/log.47962010._003203.job.log.tgz.1
[2026-01-12 03:33:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/3f/13/log.47962010._003203.job.log.tgz.1
[2026-01-12 03:33:04]  workdir=None
[2026-01-12 03:33:04] ]
[2026-01-12 03:33:04] 2026-01-12 08:32:01,734 | INFO     | transferring file log.47962010._003203.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6966776225/log.47962010._003203.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-12 03:33:04] 2026-01-12 08:32:01,734 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6966776225/log.47962010._003203.job.log.tgz.1 /tmp/boinchome/slots/1/log.47962010._003203.job
[2026-01-12 03:33:04] 2026-01-12 08:32:01,757 | INFO     | adding to output.list: log.47962010._003203.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/3f/13/log.47962010._003203.job.log.tgz.
[2026-01-12 03:33:04] 2026-01-12 08:32:01,757 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-12 03:33:04] 2026-01-12 08:32:01,758 | INFO     | summary of transferred files:
[2026-01-12 03:33:04] 2026-01-12 08:32:01,758 | INFO     |  -- lfn=log.47962010._003203.job.log.tgz.1, status_code=0, status=transferred
[2026-01-12 03:33:04] 2026-01-12 08:32:01,758 | INFO     | stage-out finished correctly
[2026-01-12 03:33:04] 2026-01-12 08:32:01,837 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-12 03:33:04] 2026-01-12 08:32:01,921 | INFO     | monitor loop #299: job 0:6966776225 is in state 'finished'
[2026-01-12 03:33:04] 2026-01-12 08:32:01,921 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 03:33:04] 2026-01-12 08:32:02,676 | INFO     | time since job start (4391s) is within the limit (349056.0s)
[2026-01-12 03:33:04] 2026-01-12 08:32:03,781 | INFO     | job 6966776225 has state=finished
[2026-01-12 03:33:04] 2026-01-12 08:32:03,782 | INFO     | preparing for final server update for job 6966776225 in state='finished'
[2026-01-12 03:33:04] 2026-01-12 08:32:03,782 | INFO     | this job has now completed (state=finished)
[2026-01-12 03:33:04] 2026-01-12 08:32:03,782 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-12 03:33:04] 2026-01-12 08:32:03,783 | INFO     | log transfer has been attempted: DONE
[2026-01-12 03:33:04] 2026-01-12 08:32:03,783 | INFO     | job 6966776225 has finished - writing final server update
[2026-01-12 03:33:04] 2026-01-12 08:32:03,783 | INFO     | total number of processed events: 50 (read)
[2026-01-12 03:33:04] 2026-01-12 08:32:03,784 | INFO     | executing command: lscpu
[2026-01-12 03:33:04] 2026-01-12 08:32:03,845 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-12 03:33:04] 2026-01-12 08:32:04,425 | INFO     | monitor loop #300: job 0:6966776225 is in state 'finished'
[2026-01-12 03:33:04] 2026-01-12 08:32:04,425 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 03:33:04] 2026-01-12 08:32:04,677 | INFO     | time since job start (4393s) is within the limit (349056.0s)
[2026-01-12 03:33:04] 2026-01-12 08:32:06,184 | INFO     | PID=291910 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-12 03:33:04] 2026-01-12 08:32:06,184 | INFO     | .. there are 13 such processes running
[2026-01-12 03:33:04] 2026-01-12 08:32:06,926 | INFO     | monitor loop #301: job 0:6966776225 is in state 'finished'
[2026-01-12 03:33:04] 2026-01-12 08:32:06,926 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 03:33:04] 2026-01-12 08:32:07,185 | INFO     | time since job start (4396s) is within the limit (349056.0s)
[2026-01-12 03:33:04] 2026-01-12 08:32:07,702 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-12 03:33:04] 2026-01-12 08:32:07,707 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3079.3478854166665
[2026-01-12 03:33:04] 2026-01-12 08:32:07,720 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6966776225/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 03:33:04] 2026-01-12 08:32:07,721 | INFO     | extracted standard info from prmon json
[2026-01-12 03:33:04] 2026-01-12 08:32:07,721 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 03:33:04] 2026-01-12 08:32:07,721 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 03:33:04] 2026-01-12 08:32:07,722 | INFO     | fitting pss+swap vs Time
[2026-01-12 03:33:04] 2026-01-12 08:32:07,723 | INFO     | sum of square deviations: 85080402.98461549
[2026-01-12 03:33:04] 2026-01-12 08:32:07,723 | INFO     | sum of deviations: 2424761311.323077
[2026-01-12 03:33:04] 2026-01-12 08:32:07,723 | INFO     | mean x: 1768204626.9846153
[2026-01-12 03:33:04] 2026-01-12 08:32:07,723 | INFO     | mean y: 2685145.323076923
[2026-01-12 03:33:04] 2026-01-12 08:32:07,723 | INFO     | intersect: -50390519630.517296
[2026-01-12 03:33:04] 2026-01-12 08:32:07,723 | INFO     | chi2: 0.22235385880695901
[2026-01-12 03:33:04] 2026-01-12 08:32:07,723 | INFO     | current memory leak: 28.50 B/s (using 65 data points, chi2=0.22)
[2026-01-12 03:33:04] 2026-01-12 08:32:07,724 | INFO     | could have reported an average CPU frequency of 3126 MHz (6 samples)
[2026-01-12 03:33:04] 2026-01-12 08:32:07,724 | INFO     | ..............................
[2026-01-12 03:33:04] 2026-01-12 08:32:07,724 | INFO     | . Timing measurements:
[2026-01-12 03:33:04] 2026-01-12 08:32:07,724 | INFO     | . get job = 0 s
[2026-01-12 03:33:04] 2026-01-12 08:32:07,724 | INFO     | . initial setup = 2 s
[2026-01-12 03:33:04] 2026-01-12 08:32:07,724 | INFO     | . payload setup = 11 s
[2026-01-12 03:33:04] 2026-01-12 08:32:07,724 | INFO     | . stage-in = 0 s
[2026-01-12 03:33:04] 2026-01-12 08:32:07,724 | INFO     | . payload execution = 4355 s
[2026-01-12 03:33:04] 2026-01-12 08:32:07,724 | INFO     | . stage-out = 0 s
[2026-01-12 03:33:04] 2026-01-12 08:32:07,724 | INFO     | . log creation = 0 s
[2026-01-12 03:33:04] 2026-01-12 08:32:07,724 | INFO     | ..............................
[2026-01-12 03:33:04] 2026-01-12 08:32:07,795 | INFO     | 
[2026-01-12 03:33:04] 2026-01-12 08:32:07,796 | INFO     | job summary report
[2026-01-12 03:33:04] 2026-01-12 08:32:07,796 | INFO     | --------------------------------------------------
[2026-01-12 03:33:04] 2026-01-12 08:32:07,796 | INFO     | PanDA job id: 6966776225
[2026-01-12 03:33:04] 2026-01-12 08:32:07,796 | INFO     | task id: 47962010
[2026-01-12 03:33:04] 2026-01-12 08:32:07,796 | INFO     | errors: (none)
[2026-01-12 03:33:04] 2026-01-12 08:32:07,796 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 03:33:04] 2026-01-12 08:32:07,796 | INFO     | pilot state: finished 
[2026-01-12 03:33:04] 2026-01-12 08:32:07,796 | INFO     | transexitcode: 0
[2026-01-12 03:33:04] 2026-01-12 08:32:07,796 | INFO     | exeerrorcode: 0
[2026-01-12 03:33:04] 2026-01-12 08:32:07,796 | INFO     | exeerrordiag: 
[2026-01-12 03:33:04] 2026-01-12 08:32:07,796 | INFO     | exitcode: 0
[2026-01-12 03:33:04] 2026-01-12 08:32:07,796 | INFO     | exitmsg: OK
[2026-01-12 03:33:04] 2026-01-12 08:32:07,796 | INFO     | cpuconsumptiontime: 11981 s
[2026-01-12 03:33:04] 2026-01-12 08:32:07,796 | INFO     | nevents: 50
[2026-01-12 03:33:04] 2026-01-12 08:32:07,797 | INFO     | neventsw: 0
[2026-01-12 03:33:04] 2026-01-12 08:32:07,797 | INFO     | pid: 309577
[2026-01-12 03:33:04] 2026-01-12 08:32:07,797 | INFO     | pgrp: 309577
[2026-01-12 03:33:04] 2026-01-12 08:32:07,797 | INFO     | corecount: 9
[2026-01-12 03:33:04] 2026-01-12 08:32:07,797 | INFO     | event service: False
[2026-01-12 03:33:04] 2026-01-12 08:32:07,797 | INFO     | sizes: {0: 2284397, 1: 2284596, 6: 2284858, 11: 2284886, 4370: 2311740, 4372: 2320918, 4378: 2321108}
[2026-01-12 03:33:04] 2026-01-12 08:32:07,797 | INFO     | --------------------------------------------------
[2026-01-12 03:33:04] 2026-01-12 08:32:07,797 | INFO     | 
[2026-01-12 03:33:04] 2026-01-12 08:32:07,797 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-12 03:33:04] 2026-01-12 08:32:07,816 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,816 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,816 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,816 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,816 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,816 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,816 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,816 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,816 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,817 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,817 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,817 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,817 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,817 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,817 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,817 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,817 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,817 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 03:33:04] 2026-01-12 08:32:07,817 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,817 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 03:33:04] 2026-01-12 08:32:07,817 | INFO     | job 6966776225 has completed (purged errors)
[2026-01-12 03:33:04] 2026-01-12 08:32:07,817 | INFO     | overall cleanup function is called
[2026-01-12 03:33:04] 2026-01-12 08:32:08,832 | INFO     | --- collectZombieJob: --- 10, [309577]
[2026-01-12 03:33:04] 2026-01-12 08:32:08,832 | INFO     | zombie collector waiting for pid 309577
[2026-01-12 03:33:04] 2026-01-12 08:32:08,832 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 03:33:04] 2026-01-12 08:32:08,832 | INFO     | collected zombie processes
[2026-01-12 03:33:04] 2026-01-12 08:32:08,832 | INFO     | will attempt to kill all subprocesses of pid=309577
[2026-01-12 03:33:04] 2026-01-12 08:32:09,161 | INFO     | process IDs to be killed: [309577] (in reverse order)
[2026-01-12 03:33:04] 2026-01-12 08:32:09,271 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 03:33:04] 2026-01-12 08:32:09,271 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 03:33:04] 2026-01-12 08:32:09,287 | INFO     | did not find any defunct processes belonging to 309577
[2026-01-12 03:33:04] 2026-01-12 08:32:09,303 | INFO     | did not find any defunct processes belonging to 309577
[2026-01-12 03:33:04] 2026-01-12 08:32:09,303 | INFO     | ready for new job
[2026-01-12 03:33:04] 2026-01-12 08:32:09,304 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 03:33:04] 2026-01-12 08:32:09,305 | INFO     | ***************************************
[2026-01-12 03:33:04] 2026-01-12 08:32:09,305 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 03:33:04] 2026-01-12 08:32:09,305 | INFO     | ***************************************
[2026-01-12 03:33:04] 2026-01-12 08:32:09,305 | INFO     | 
[2026-01-12 03:33:04] 2026-01-12 08:32:09,310 | INFO     | architecture information:
[2026-01-12 03:33:04] 2026-01-12 08:32:09,311 | INFO     | executing command: cat /etc/os-release
[2026-01-12 03:33:04] 2026-01-12 08:32:09,326 | INFO     | cat /etc/os-release:
[2026-01-12 03:33:04] NAME="CentOS Linux"
[2026-01-12 03:33:04] VERSION="7 (Core)"
[2026-01-12 03:33:04] ID="centos"
[2026-01-12 03:33:04] ID_LIKE="rhel fedora"
[2026-01-12 03:33:04] VERSION_ID="7"
[2026-01-12 03:33:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 03:33:04] ANSI_COLOR="0;31"
[2026-01-12 03:33:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 03:33:04] HOME_URL="https://www.centos.org/"
[2026-01-12 03:33:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 03:33:04] 
[2026-01-12 03:33:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 03:33:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 03:33:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 03:33:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 03:33:04] 
[2026-01-12 03:33:04] 2026-01-12 08:32:09,326 | INFO     | ***************************************
[2026-01-12 03:33:04] 2026-01-12 08:32:09,830 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-12 03:33:04] 2026-01-12 08:32:09,844 | INFO     | sufficient remaining disk space (76369887232 B)
[2026-01-12 03:33:04] 2026-01-12 08:32:09,845 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 03:33:04] 2026-01-12 08:32:09,845 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 03:33:04] 2026-01-12 08:32:09,845 | INFO     | update_server=False
[2026-01-12 03:33:04] 2026-01-12 08:32:09,845 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 03:33:04] 2026-01-12 08:32:09,846 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 03:33:04] 2026-01-12 08:32:09,890 | INFO     | all payload control threads have been joined
[2026-01-12 03:33:04] 2026-01-12 08:32:10,078 | INFO     | all data control threads have been joined
[2026-01-12 03:33:04] 2026-01-12 08:32:10,429 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 03:33:04] 2026-01-12 08:32:10,429 | INFO     | aborting loop
[2026-01-12 03:33:04] 2026-01-12 08:32:10,851 | INFO     | [job] retrieve thread has finished
[2026-01-12 03:33:04] 2026-01-12 08:32:10,869 | INFO     | [job] validate thread has finished
[2026-01-12 03:33:04] 2026-01-12 08:32:10,895 | INFO     | [payload] control thread has finished
[2026-01-12 03:33:04] 2026-01-12 08:32:10,896 | INFO     | [payload] validate_post thread has finished
[2026-01-12 03:33:04] 2026-01-12 08:32:10,935 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 03:33:04] 2026-01-12 08:32:10,960 | INFO     | [payload] failed_post thread has finished
[2026-01-12 03:33:04] 2026-01-12 08:32:10,977 | INFO     | [data] copytool_in thread has finished
[2026-01-12 03:33:04] 2026-01-12 08:32:11,021 | INFO     | all job control threads have been joined
[2026-01-12 03:33:04] 2026-01-12 08:32:11,083 | INFO     | [data] control thread has finished
[2026-01-12 03:33:04] 2026-01-12 08:32:11,346 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 03:33:04] 2026-01-12 08:32:11,435 | INFO     | [job] job monitor thread has finished
[2026-01-12 03:33:04] 2026-01-12 08:32:11,655 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 03:33:04] 2026-01-12 08:32:11,853 | INFO     | [data] copytool_out thread has finished
[2026-01-12 03:33:04] 2026-01-12 08:32:12,027 | INFO     | [job] control thread has finished
[2026-01-12 03:33:04] 2026-01-12 08:32:12,418 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 03:33:04] 2026-01-12 08:32:12,806 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 03:33:04] 2026-01-12 08:32:13,812 | INFO     | [job] queue monitor thread has finished
[2026-01-12 03:33:04] 2026-01-12 08:32:16,420 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 03:33:04] 2026-01-12 08:32:20,124 | INFO     | job.realtimelogging is not enabled
[2026-01-12 03:33:04] 2026-01-12 08:32:21,129 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 03:33:04] 2026-01-12 08:32:40,685 | INFO     | PID=291910 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-12 03:33:04] 2026-01-12 08:32:40,685 | INFO     | .. there are 13 such processes running
[2026-01-12 03:33:04] 2026-01-12 08:32:40,686 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 03:33:04] 2026-01-12 08:32:40,686 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 03:33:04] 2026-01-12 08:32:40,686 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 03:33:04] 2026-01-12 08:32:58,208 | INFO     | [monitor] cgroup control has ended
[2026-01-12 03:33:04] 2026-01-12 08:32:59,344 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140127059441472)>', '<ExcThread(monitor, started 140126705403648)>']
[2026-01-12 03:33:04] 2026-01-12 08:32:59,771 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 03:33:04] 2026-01-12 08:32:59,771 | INFO     | [monitor] control thread has ended
[2026-01-12 03:33:04] 2026-01-12 08:33:04,370 | INFO     | all workflow threads have been joined
[2026-01-12 03:33:04] 2026-01-12 08:33:04,370 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 03:33:04] 2026-01-12 08:33:04,370 | INFO     | traces error code: 0
[2026-01-12 03:33:04] 2026-01-12 08:33:04,371 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 03:33:04] 2026-01-12 08:33:04,479 [wrapper] ==== pilot stdout END ====
[2026-01-12 03:33:04] 2026-01-12 08:33:04,483 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 03:33:04] 2026-01-12 08:33:04,486 [wrapper] pilotpid: 291910
[2026-01-12 03:33:04] 2026-01-12 08:33:04,489 [wrapper] Pilot exit status: 0
[2026-01-12 03:33:04] 2026-01-12 08:33:04,500 [wrapper] pandaids: 6966776225
[2026-01-12 03:33:04] 2026-01-12 08:33:04,569 [wrapper] cleanup supervisor_pilot  433581 291911
[2026-01-12 03:33:04] 2026-01-12 08:33:04,572 [wrapper] Test setup, not cleaning
[2026-01-12 03:33:04] 2026-01-12 08:33:04,575 [wrapper] apfmon messages muted
[2026-01-12 03:33:04] 2026-01-12 08:33:04,577 [wrapper] ==== wrapper stdout END ====
[2026-01-12 03:33:04] 2026-01-12 08:33:04,579 [wrapper] ==== wrapper stderr END ====
[2026-01-12 03:33:04]  *** Error codes and diagnostics ***
[2026-01-12 03:33:04]     "exeErrorCode": 0,
[2026-01-12 03:33:04]     "exeErrorDiag": "",
[2026-01-12 03:33:04]     "pilotErrorCode": 0,
[2026-01-12 03:33:04]     "pilotErrorDiag": "",
[2026-01-12 03:33:04]  *** Listing of results directory ***
[2026-01-12 03:33:04] total 437100
[2026-01-12 03:33:04] -rw-r--r--. 1 boincer umatlas    579449 Jan 12 01:35 pilot3.tar.gz
[2026-01-12 03:33:04] -rwx------. 1 boincer umatlas     36322 Jan 12 02:17 runpilot2-wrapper.sh
[2026-01-12 03:33:04] -rw-r--r--. 1 boincer umatlas      5112 Jan 12 02:17 queuedata.json
[2026-01-12 03:33:04] -rw-r--r--. 1 boincer umatlas       100 Jan 12 02:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 03:33:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 12 02:18 run_atlas
[2026-01-12 03:33:04] -rw-r--r--. 1 boincer umatlas       105 Jan 12 02:18 job.xml
[2026-01-12 03:33:04] -rw-r--r--. 2 boincer umatlas 393484406 Jan 12 02:18 EVNT.47962006._000060.pool.root.1
[2026-01-12 03:33:04] drwxrwx--x. 2 boincer umatlas      4096 Jan 12 02:18 shared
[2026-01-12 03:33:04] -rw-r--r--. 2 boincer umatlas    592605 Jan 12 02:18 input.tar.gz
[2026-01-12 03:33:04] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 02:18 start_atlas.sh
[2026-01-12 03:33:04] -rw-r--r--. 1 boincer umatlas         0 Jan 12 02:18 boinc_lockfile
[2026-01-12 03:33:04] -rw-r--r--. 1 boincer umatlas      2889 Jan 12 02:18 pandaJob.out
[2026-01-12 03:33:04] -rw-------. 1 boincer umatlas        57 Jan 12 02:18 setup.sh.local
[2026-01-12 03:33:04] -rw-------. 1 boincer umatlas    987688 Jan 12 02:18 agis_schedconf.cvmfs.json
[2026-01-12 03:33:04] -rw-------. 1 boincer umatlas   1516240 Jan 12 02:18 agis_ddmendpoints.agis.ALL.json
[2026-01-12 03:33:04] drwx------. 5 boincer umatlas      4096 Jan 12 02:18 pilot3
[2026-01-12 03:33:04] -rw-r--r--. 1 boincer umatlas       529 Jan 12 03:25 boinc_task_state.xml
[2026-01-12 03:33:04] -rw-------. 1 boincer umatlas  46340808 Jan 12 03:31 HITS.47962010._003203.pool.root.1
[2026-01-12 03:33:04] -rw-r--r--. 1 boincer umatlas      6945 Jan 12 03:31 init_data.xml
[2026-01-12 03:33:04] -rw-------. 1 boincer umatlas      1030 Jan 12 03:31 memory_monitor_summary.json
[2026-01-12 03:33:04] -rw-------. 1 boincer umatlas   1286899 Jan 12 03:32 log.47962010._003203.job.log.tgz.1
[2026-01-12 03:33:04] -rw-------. 1 boincer umatlas      8531 Jan 12 03:32 heartbeat.json
[2026-01-12 03:33:04] -rw-------. 1 boincer umatlas        95 Jan 12 03:32 pilot_heartbeat.json
[2026-01-12 03:33:04] -rw-r--r--. 1 boincer umatlas      8192 Jan 12 03:32 boinc_mmap_file
[2026-01-12 03:33:04] -rw-r--r--. 1 boincer umatlas        27 Jan 12 03:32 wrapper_checkpoint.txt
[2026-01-12 03:33:04] -rw-------. 1 boincer umatlas      4895 Jan 12 03:33 pilotlog.txt
[2026-01-12 03:33:04] -rw-------. 1 boincer umatlas    634685 Jan 12 03:33 log.47962010._003203.job.log.1
[2026-01-12 03:33:04] -rw-------. 1 boincer umatlas       353 Jan 12 03:33 output.list
[2026-01-12 03:33:04] -rw-r--r--. 1 boincer umatlas       620 Jan 12 03:33 runtime_log
[2026-01-12 03:33:04] -rw-------. 1 boincer umatlas   1945600 Jan 12 03:33 result.tar.gz
[2026-01-12 03:33:04] -rw-r--r--. 1 boincer umatlas      9337 Jan 12 03:33 runtime_log.err
[2026-01-12 03:33:04] -rw-------. 1 boincer umatlas       652 Jan 12 03:33 bPFKDmKMRz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDme5mKDmhD0uvn.diag
[2026-01-12 03:33:04] -rw-r--r--. 1 boincer umatlas     21947 Jan 12 03:33 stderr.txt
[2026-01-12 03:33:04] HITS file was successfully produced:
[2026-01-12 03:33:04] -rw-------. 1 boincer umatlas 46340808 Jan 12 03:31 shared/HITS.pool.root.1
[2026-01-12 03:33:04]  *** Contents of shared directory: ***
[2026-01-12 03:33:04] total 432020
[2026-01-12 03:33:04] -rw-r--r--. 2 boincer umatlas 393484406 Jan 12 02:18 ATLAS.root_0
[2026-01-12 03:33:04] -rw-r--r--. 2 boincer umatlas    592605 Jan 12 02:18 input.tar.gz
[2026-01-12 03:33:04] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 02:18 start_atlas.sh
[2026-01-12 03:33:04] -rw-------. 1 boincer umatlas  46340808 Jan 12 03:31 HITS.pool.root.1
[2026-01-12 03:33:04] -rw-------. 1 boincer umatlas   1945600 Jan 12 03:33 result.tar.gz
03:33:05 (286215): run_atlas exited; CPU time 11972.869448
03:33:05 (286215): called boinc_finish(0)

</stderr_txt>
]]>

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