Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:18:15 (282462): wrapper (7.7.26015): starting
02:18:15 (282462): wrapper: running run_atlas (--nthreads 9)
[2026-01-12 02:18:15] Arguments: --nthreads 9
[2026-01-12 02:18:15] Threads: 9
[2026-01-12 02:18:15] Checking for CVMFS
[2026-01-12 02:18:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 02:18:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 02:18:15] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 02:18:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 02:18:16] 2.13.3.0 12846 97373 164380 155043 0 57 25238535 32935937 17252 16776704 0 426628053 99.469 611315704 38399 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-12 02:18:16] CVMFS is ok
[2026-01-12 02:18:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 02:18:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 02:18:16] Further information can be found at the LHC@home message board.
[2026-01-12 02:18:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 02:18:16] Checking for apptainer binary...
[2026-01-12 02:18:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 02:18:16] Running /usr/bin/apptainer --version
[2026-01-12 02:18:16] apptainer version 1.4.5-2.el9
[2026-01-12 02:18:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 02:18:16] c7-16-9.aglt2.org
[2026-01-12 02:18:16] apptainer works
[2026-01-12 02:18:16] Set ATHENA_PROC_NUMBER=9
[2026-01-12 02:18:16] Set ATHENA_CORE_NUMBER=9
[2026-01-12 02:18:16] Starting ATLAS job with PandaID=6966776228
[2026-01-12 02:18:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 03:28:50]  *** The last 200 lines of the pilot log: ***
[2026-01-12 03:28:50]  scope=mc16_13TeV
[2026-01-12 03:28:50]  status=None
[2026-01-12 03:28:50]  status_code=0
[2026-01-12 03:28:50]  storage_token=
[2026-01-12 03:28:50]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6966776228/log.47962010._003206.job.log.tgz.1
[2026-01-12 03:28:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/98/6d/log.47962010._003206.job.log.tgz.1
[2026-01-12 03:28:50]  workdir=None
[2026-01-12 03:28:50] ]
[2026-01-12 03:28:50] 2026-01-12 08:27:57,286 | INFO     | transferring file log.47962010._003206.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6966776228/log.47962010._003206.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-12 03:28:50] 2026-01-12 08:27:57,286 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6966776228/log.47962010._003206.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._003206.job
[2026-01-12 03:28:50] 2026-01-12 08:27:57,303 | INFO     | adding to output.list: log.47962010._003206.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/98/6d/log.47962010._003206.job.log.tgz.
[2026-01-12 03:28:50] 2026-01-12 08:27:57,304 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-12 03:28:50] 2026-01-12 08:27:57,304 | INFO     | summary of transferred files:
[2026-01-12 03:28:50] 2026-01-12 08:27:57,304 | INFO     |  -- lfn=log.47962010._003206.job.log.tgz.1, status_code=0, status=transferred
[2026-01-12 03:28:50] 2026-01-12 08:27:57,304 | INFO     | stage-out finished correctly
[2026-01-12 03:28:50] 2026-01-12 08:27:57,814 | INFO     | time since job start (4161s) is within the limit (349056.0s)
[2026-01-12 03:28:50] 2026-01-12 08:27:59,647 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-12 03:28:50] 2026-01-12 08:27:59,820 | INFO     | time since job start (4163s) is within the limit (349056.0s)
[2026-01-12 03:28:50] 2026-01-12 08:28:00,801 | WARNING  | process 299435 can no longer be monitored (due to stat problems) - aborting
[2026-01-12 03:28:50] 2026-01-12 08:28:00,801 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6966776228/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 03:28:50] 2026-01-12 08:28:01,143 | INFO     | number of running child processes to parent process 299435: 1
[2026-01-12 03:28:50] 2026-01-12 08:28:01,145 | INFO     | maximum number of monitored processes: 17
[2026-01-12 03:28:50] 2026-01-12 08:28:01,507 | INFO     | job 6966776228 has state=finished
[2026-01-12 03:28:50] 2026-01-12 08:28:01,507 | INFO     | preparing for final server update for job 6966776228 in state='finished'
[2026-01-12 03:28:50] 2026-01-12 08:28:01,507 | INFO     | this job has now completed (state=finished)
[2026-01-12 03:28:50] 2026-01-12 08:28:01,507 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-12 03:28:50] 2026-01-12 08:28:01,508 | INFO     | log transfer has been attempted: DONE
[2026-01-12 03:28:50] 2026-01-12 08:28:01,508 | INFO     | job 6966776228 has finished - writing final server update
[2026-01-12 03:28:50] 2026-01-12 08:28:01,508 | INFO     | total number of processed events: 50 (read)
[2026-01-12 03:28:50] 2026-01-12 08:28:01,509 | INFO     | executing command: lscpu
[2026-01-12 03:28:50] 2026-01-12 08:28:01,571 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-12 03:28:50] 2026-01-12 08:28:01,827 | INFO     | time since job start (4165s) is within the limit (349056.0s)
[2026-01-12 03:28:50] 2026-01-12 08:28:03,650 | INFO     | monitor loop #275: job 0:6966776228 is in state 'finished'
[2026-01-12 03:28:50] 2026-01-12 08:28:03,650 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 03:28:50] 2026-01-12 08:28:03,832 | INFO     | time since job start (4167s) is within the limit (349056.0s)
[2026-01-12 03:28:50] 2026-01-12 08:28:05,283 | INFO     | PID=286208 has CPU usage=12.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-12 03:28:50] 2026-01-12 08:28:05,284 | INFO     | .. there are 14 such processes running
[2026-01-12 03:28:50] 2026-01-12 08:28:06,043 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-12 03:28:50] 2026-01-12 08:28:06,049 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3128.4533020833333
[2026-01-12 03:28:50] 2026-01-12 08:28:06,062 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6966776228/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 03:28:50] 2026-01-12 08:28:06,063 | INFO     | extracted standard info from prmon json
[2026-01-12 03:28:50] 2026-01-12 08:28:06,063 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 03:28:50] 2026-01-12 08:28:06,063 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 03:28:50] 2026-01-12 08:28:06,064 | INFO     | fitting pss+swap vs Time
[2026-01-12 03:28:50] 2026-01-12 08:28:06,064 | INFO     | sum of square deviations: 70308191.93442622
[2026-01-12 03:28:50] 2026-01-12 08:28:06,064 | INFO     | sum of deviations: 1126592.032787323
[2026-01-12 03:28:50] 2026-01-12 08:28:06,065 | INFO     | mean x: 1768204489.0327868
[2026-01-12 03:28:50] 2026-01-12 08:28:06,065 | INFO     | mean y: 2679667.9836065574
[2026-01-12 03:28:50] 2026-01-12 08:28:06,065 | INFO     | intersect: -25653375.931688856
[2026-01-12 03:28:50] 2026-01-12 08:28:06,065 | INFO     | chi2: 0.3932179711700648
[2026-01-12 03:28:50] 2026-01-12 08:28:06,065 | INFO     | current memory leak: 0.02 B/s (using 61 data points, chi2=0.39)
[2026-01-12 03:28:50] 2026-01-12 08:28:06,065 | INFO     | could have reported an average CPU frequency of 3094 MHz (6 samples)
[2026-01-12 03:28:50] 2026-01-12 08:28:06,065 | INFO     | ..............................
[2026-01-12 03:28:50] 2026-01-12 08:28:06,065 | INFO     | . Timing measurements:
[2026-01-12 03:28:50] 2026-01-12 08:28:06,065 | INFO     | . get job = 0 s
[2026-01-12 03:28:50] 2026-01-12 08:28:06,065 | INFO     | . initial setup = 3 s
[2026-01-12 03:28:50] 2026-01-12 08:28:06,065 | INFO     | . payload setup = 10 s
[2026-01-12 03:28:50] 2026-01-12 08:28:06,066 | INFO     | . stage-in = 0 s
[2026-01-12 03:28:50] 2026-01-12 08:28:06,066 | INFO     | . payload execution = 4128 s
[2026-01-12 03:28:50] 2026-01-12 08:28:06,066 | INFO     | . stage-out = 0 s
[2026-01-12 03:28:50] 2026-01-12 08:28:06,066 | INFO     | . log creation = 0 s
[2026-01-12 03:28:50] 2026-01-12 08:28:06,066 | INFO     | ..............................
[2026-01-12 03:28:50] 2026-01-12 08:28:06,133 | INFO     | 
[2026-01-12 03:28:50] 2026-01-12 08:28:06,133 | INFO     | job summary report
[2026-01-12 03:28:50] 2026-01-12 08:28:06,133 | INFO     | --------------------------------------------------
[2026-01-12 03:28:50] 2026-01-12 08:28:06,133 | INFO     | PanDA job id: 6966776228
[2026-01-12 03:28:50] 2026-01-12 08:28:06,133 | INFO     | task id: 47962010
[2026-01-12 03:28:50] 2026-01-12 08:28:06,133 | INFO     | errors: (none)
[2026-01-12 03:28:50] 2026-01-12 08:28:06,134 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 03:28:50] 2026-01-12 08:28:06,134 | INFO     | pilot state: finished 
[2026-01-12 03:28:50] 2026-01-12 08:28:06,134 | INFO     | transexitcode: 0
[2026-01-12 03:28:50] 2026-01-12 08:28:06,134 | INFO     | exeerrorcode: 0
[2026-01-12 03:28:50] 2026-01-12 08:28:06,134 | INFO     | exeerrordiag: 
[2026-01-12 03:28:50] 2026-01-12 08:28:06,134 | INFO     | exitcode: 0
[2026-01-12 03:28:50] 2026-01-12 08:28:06,134 | INFO     | exitmsg: OK
[2026-01-12 03:28:50] 2026-01-12 08:28:06,134 | INFO     | cpuconsumptiontime: 12820 s
[2026-01-12 03:28:50] 2026-01-12 08:28:06,134 | INFO     | nevents: 50
[2026-01-12 03:28:50] 2026-01-12 08:28:06,134 | INFO     | neventsw: 0
[2026-01-12 03:28:50] 2026-01-12 08:28:06,134 | INFO     | pid: 299435
[2026-01-12 03:28:50] 2026-01-12 08:28:06,134 | INFO     | pgrp: 299435
[2026-01-12 03:28:50] 2026-01-12 08:28:06,134 | INFO     | corecount: 9
[2026-01-12 03:28:50] 2026-01-12 08:28:06,134 | INFO     | event service: False
[2026-01-12 03:28:50] 2026-01-12 08:28:06,134 | INFO     | sizes: {0: 2284568, 8: 2284830, 11: 2284858, 4142: 2311504, 4143: 2320498, 4146: 2320554, 4152: 2320928}
[2026-01-12 03:28:50] 2026-01-12 08:28:06,134 | INFO     | --------------------------------------------------
[2026-01-12 03:28:50] 2026-01-12 08:28:06,134 | INFO     | 
[2026-01-12 03:28:50] 2026-01-12 08:28:06,134 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-12 03:28:50] 2026-01-12 08:28:06,154 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,155 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,155 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,155 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,155 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,155 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,155 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,155 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,155 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,155 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,155 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,155 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,155 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,155 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,156 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,156 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,156 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,156 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 03:28:50] 2026-01-12 08:28:06,156 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,156 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 03:28:50] 2026-01-12 08:28:06,156 | INFO     | job 6966776228 has completed (purged errors)
[2026-01-12 03:28:50] 2026-01-12 08:28:06,156 | INFO     | overall cleanup function is called
[2026-01-12 03:28:50] 2026-01-12 08:28:07,173 | INFO     | --- collectZombieJob: --- 10, [299435]
[2026-01-12 03:28:50] 2026-01-12 08:28:07,174 | INFO     | zombie collector waiting for pid 299435
[2026-01-12 03:28:50] 2026-01-12 08:28:07,174 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 03:28:50] 2026-01-12 08:28:07,174 | INFO     | collected zombie processes
[2026-01-12 03:28:50] 2026-01-12 08:28:07,174 | INFO     | will attempt to kill all subprocesses of pid=299435
[2026-01-12 03:28:50] 2026-01-12 08:28:07,513 | INFO     | process IDs to be killed: [299435] (in reverse order)
[2026-01-12 03:28:50] 2026-01-12 08:28:07,622 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 03:28:50] 2026-01-12 08:28:07,623 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 03:28:50] 2026-01-12 08:28:07,639 | INFO     | did not find any defunct processes belonging to 299435
[2026-01-12 03:28:50] 2026-01-12 08:28:07,655 | INFO     | did not find any defunct processes belonging to 299435
[2026-01-12 03:28:50] 2026-01-12 08:28:07,655 | INFO     | ready for new job
[2026-01-12 03:28:50] 2026-01-12 08:28:07,655 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 03:28:50] 2026-01-12 08:28:07,657 | INFO     | ***************************************
[2026-01-12 03:28:50] 2026-01-12 08:28:07,657 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 03:28:50] 2026-01-12 08:28:07,657 | INFO     | ***************************************
[2026-01-12 03:28:50] 2026-01-12 08:28:07,657 | INFO     | 
[2026-01-12 03:28:50] 2026-01-12 08:28:07,662 | INFO     | architecture information:
[2026-01-12 03:28:50] 2026-01-12 08:28:07,662 | INFO     | executing command: cat /etc/os-release
[2026-01-12 03:28:50] 2026-01-12 08:28:07,677 | INFO     | cat /etc/os-release:
[2026-01-12 03:28:50] NAME="CentOS Linux"
[2026-01-12 03:28:50] VERSION="7 (Core)"
[2026-01-12 03:28:50] ID="centos"
[2026-01-12 03:28:50] ID_LIKE="rhel fedora"
[2026-01-12 03:28:50] VERSION_ID="7"
[2026-01-12 03:28:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 03:28:50] ANSI_COLOR="0;31"
[2026-01-12 03:28:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 03:28:50] HOME_URL="https://www.centos.org/"
[2026-01-12 03:28:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 03:28:50] 
[2026-01-12 03:28:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 03:28:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 03:28:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 03:28:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 03:28:50] 
[2026-01-12 03:28:50] 2026-01-12 08:28:07,677 | INFO     | ***************************************
[2026-01-12 03:28:50] 2026-01-12 08:28:08,180 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-12 03:28:50] 2026-01-12 08:28:08,198 | INFO     | sufficient remaining disk space (75526832128 B)
[2026-01-12 03:28:50] 2026-01-12 08:28:08,199 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 03:28:50] 2026-01-12 08:28:08,199 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 03:28:50] 2026-01-12 08:28:08,199 | INFO     | update_server=False
[2026-01-12 03:28:50] 2026-01-12 08:28:08,199 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 03:28:50] 2026-01-12 08:28:08,200 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 03:28:50] 2026-01-12 08:28:08,436 | INFO     | all payload control threads have been joined
[2026-01-12 03:28:50] 2026-01-12 08:28:08,583 | INFO     | all data control threads have been joined
[2026-01-12 03:28:50] 2026-01-12 08:28:08,663 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-12 03:28:50] 2026-01-12 08:28:08,663 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-12 03:28:50] 2026-01-12 08:28:08,663 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 03:28:50] 2026-01-12 08:28:08,663 | INFO     | will abort loop
[2026-01-12 03:28:50] 2026-01-12 08:28:09,205 | INFO     | [job] retrieve thread has finished
[2026-01-12 03:28:50] 2026-01-12 08:28:09,252 | INFO     | all job control threads have been joined
[2026-01-12 03:28:50] 2026-01-12 08:28:09,442 | INFO     | [payload] control thread has finished
[2026-01-12 03:28:50] 2026-01-12 08:28:09,513 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 03:28:50] 2026-01-12 08:28:09,549 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 03:28:50] 2026-01-12 08:28:09,588 | INFO     | [data] control thread has finished
[2026-01-12 03:28:50] 2026-01-12 08:28:09,668 | INFO     | [job] job monitor thread has finished
[2026-01-12 03:28:50] 2026-01-12 08:28:09,890 | INFO     | [data] copytool_in thread has finished
[2026-01-12 03:28:50] 2026-01-12 08:28:10,033 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 03:28:50] 2026-01-12 08:28:10,207 | INFO     | [data] copytool_out thread has finished
[2026-01-12 03:28:50] 2026-01-12 08:28:10,238 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 03:28:50] 2026-01-12 08:28:10,257 | INFO     | [job] control thread has finished
[2026-01-12 03:28:50] 2026-01-12 08:28:10,324 | INFO     | [job] validate thread has finished
[2026-01-12 03:28:50] 2026-01-12 08:28:10,394 | INFO     | [payload] validate_post thread has finished
[2026-01-12 03:28:50] 2026-01-12 08:28:10,670 | INFO     | [payload] failed_post thread has finished
[2026-01-12 03:28:50] 2026-01-12 08:28:11,143 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 03:28:50] 2026-01-12 08:28:12,148 | INFO     | [job] queue monitor thread has finished
[2026-01-12 03:28:50] 2026-01-12 08:28:14,249 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 03:28:50] 2026-01-12 08:28:18,842 | INFO     | job.realtimelogging is not enabled
[2026-01-12 03:28:50] 2026-01-12 08:28:19,848 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 03:28:50] 2026-01-12 08:28:37,911 | INFO     | PID=286208 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-12 03:28:50] 2026-01-12 08:28:37,912 | INFO     | .. there are 14 such processes running
[2026-01-12 03:28:50] 2026-01-12 08:28:37,912 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 03:28:50] 2026-01-12 08:28:37,912 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 03:28:50] 2026-01-12 08:28:37,912 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 03:28:50] 2026-01-12 08:28:43,601 | INFO     | [monitor] cgroup control has ended
[2026-01-12 03:28:50] 2026-01-12 08:28:45,166 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140300708730688)>', '<ExcThread(monitor, started 140299988883200)>']
[2026-01-12 03:28:50] 2026-01-12 08:28:45,952 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 03:28:50] 2026-01-12 08:28:45,952 | INFO     | [monitor] control thread has ended
[2026-01-12 03:28:50] 2026-01-12 08:28:50,192 | INFO     | all workflow threads have been joined
[2026-01-12 03:28:50] 2026-01-12 08:28:50,192 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 03:28:50] 2026-01-12 08:28:50,192 | INFO     | traces error code: 0
[2026-01-12 03:28:50] 2026-01-12 08:28:50,193 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 03:28:50] 2026-01-12 08:28:50,307 [wrapper] ==== pilot stdout END ====
[2026-01-12 03:28:50] 2026-01-12 08:28:50,309 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 03:28:50] 2026-01-12 08:28:50,312 [wrapper] pilotpid: 286208
[2026-01-12 03:28:50] 2026-01-12 08:28:50,314 [wrapper] Pilot exit status: 0
[2026-01-12 03:28:50] 2026-01-12 08:28:50,324 [wrapper] pandaids: 6966776228
[2026-01-12 03:28:50] 2026-01-12 08:28:50,407 [wrapper] cleanup supervisor_pilot  432313 286209
[2026-01-12 03:28:50] 2026-01-12 08:28:50,410 [wrapper] Test setup, not cleaning
[2026-01-12 03:28:50] 2026-01-12 08:28:50,413 [wrapper] apfmon messages muted
[2026-01-12 03:28:50] 2026-01-12 08:28:50,416 [wrapper] ==== wrapper stdout END ====
[2026-01-12 03:28:50] 2026-01-12 08:28:50,418 [wrapper] ==== wrapper stderr END ====
[2026-01-12 03:28:50]  *** Error codes and diagnostics ***
[2026-01-12 03:28:50]     "exeErrorCode": 0,
[2026-01-12 03:28:50]     "exeErrorDiag": "",
[2026-01-12 03:28:50]     "pilotErrorCode": 0,
[2026-01-12 03:28:50]     "pilotErrorDiag": "",
[2026-01-12 03:28:50]  *** Listing of results directory ***
[2026-01-12 03:28:50] total 438036
[2026-01-12 03:28:50] -rw-r--r--. 1 boincer umatlas    579449 Jan 12 01:35 pilot3.tar.gz
[2026-01-12 03:28:50] -rwx------. 1 boincer umatlas     36322 Jan 12 02:17 runpilot2-wrapper.sh
[2026-01-12 03:28:50] -rw-r--r--. 1 boincer umatlas      5112 Jan 12 02:17 queuedata.json
[2026-01-12 03:28:50] -rw-r--r--. 1 boincer umatlas       100 Jan 12 02:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 03:28:50] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 12 02:18 run_atlas
[2026-01-12 03:28:50] -rw-r--r--. 1 boincer umatlas       105 Jan 12 02:18 job.xml
[2026-01-12 03:28:50] -rw-r--r--. 2 boincer umatlas 393484406 Jan 12 02:18 EVNT.47962006._000060.pool.root.1
[2026-01-12 03:28:50] drwxrwx--x. 2 boincer umatlas      4096 Jan 12 02:18 shared
[2026-01-12 03:28:50] -rw-r--r--. 2 boincer umatlas    592607 Jan 12 02:18 input.tar.gz
[2026-01-12 03:28:50] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 02:18 start_atlas.sh
[2026-01-12 03:28:50] -rw-r--r--. 1 boincer umatlas         0 Jan 12 02:18 boinc_lockfile
[2026-01-12 03:28:50] -rw-r--r--. 1 boincer umatlas      2889 Jan 12 02:18 pandaJob.out
[2026-01-12 03:28:50] -rw-------. 1 boincer umatlas        57 Jan 12 02:18 setup.sh.local
[2026-01-12 03:28:50] -rw-------. 1 boincer umatlas    987688 Jan 12 02:18 agis_schedconf.cvmfs.json
[2026-01-12 03:28:50] -rw-------. 1 boincer umatlas   1516240 Jan 12 02:18 agis_ddmendpoints.agis.ALL.json
[2026-01-12 03:28:50] drwx------. 5 boincer umatlas      4096 Jan 12 02:18 pilot3
[2026-01-12 03:28:50] -rw-r--r--. 1 boincer umatlas      6945 Jan 12 03:18 init_data.xml
[2026-01-12 03:28:50] -rw-r--r--. 1 boincer umatlas       529 Jan 12 03:19 boinc_task_state.xml
[2026-01-12 03:28:50] -rw-------. 1 boincer umatlas        95 Jan 12 03:27 pilot_heartbeat.json
[2026-01-12 03:28:50] -rw-------. 1 boincer umatlas  47392267 Jan 12 03:27 HITS.47962010._003206.pool.root.1
[2026-01-12 03:28:50] -rw-------. 1 boincer umatlas      1030 Jan 12 03:27 memory_monitor_summary.json
[2026-01-12 03:28:50] -rw-------. 1 boincer umatlas   1285466 Jan 12 03:27 log.47962010._003206.job.log.tgz.1
[2026-01-12 03:28:50] -rw-------. 1 boincer umatlas      8535 Jan 12 03:28 heartbeat.json
[2026-01-12 03:28:50] -rw-r--r--. 1 boincer umatlas        27 Jan 12 03:28 wrapper_checkpoint.txt
[2026-01-12 03:28:50] -rw-r--r--. 1 boincer umatlas      8192 Jan 12 03:28 boinc_mmap_file
[2026-01-12 03:28:50] -rw-------. 1 boincer umatlas      5081 Jan 12 03:28 pilotlog.txt
[2026-01-12 03:28:50] -rw-------. 1 boincer umatlas    593790 Jan 12 03:28 log.47962010._003206.job.log.1
[2026-01-12 03:28:50] -rw-------. 1 boincer umatlas       353 Jan 12 03:28 output.list
[2026-01-12 03:28:50] -rw-r--r--. 1 boincer umatlas       620 Jan 12 03:28 runtime_log
[2026-01-12 03:28:50] -rw-------. 1 boincer umatlas   1894400 Jan 12 03:28 result.tar.gz
[2026-01-12 03:28:50] -rw-------. 1 boincer umatlas       652 Jan 12 03:28 VtIKDmKMRz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmh5mKDm4pZqEm.diag
[2026-01-12 03:28:50] -rw-r--r--. 1 boincer umatlas      9337 Jan 12 03:28 runtime_log.err
[2026-01-12 03:28:50] -rw-r--r--. 1 boincer umatlas     22076 Jan 12 03:28 stderr.txt
[2026-01-12 03:28:50] HITS file was successfully produced:
[2026-01-12 03:28:50] -rw-------. 1 boincer umatlas 47392267 Jan 12 03:27 shared/HITS.pool.root.1
[2026-01-12 03:28:50]  *** Contents of shared directory: ***
[2026-01-12 03:28:50] total 433000
[2026-01-12 03:28:50] -rw-r--r--. 2 boincer umatlas 393484406 Jan 12 02:18 ATLAS.root_0
[2026-01-12 03:28:50] -rw-r--r--. 2 boincer umatlas    592607 Jan 12 02:18 input.tar.gz
[2026-01-12 03:28:50] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 02:18 start_atlas.sh
[2026-01-12 03:28:50] -rw-------. 1 boincer umatlas  47392267 Jan 12 03:27 HITS.pool.root.1
[2026-01-12 03:28:50] -rw-------. 1 boincer umatlas   1894400 Jan 12 03:28 result.tar.gz
03:28:51 (282462): run_atlas exited; CPU time 12809.606176
03:28:51 (282462): called boinc_finish(0)

</stderr_txt>
]]>

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