Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:00:36 (80716): wrapper (7.7.26015): starting
01:00:36 (80716): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 01:00:36] Arguments: --nthreads 8
[2026-01-12 01:00:36] Threads: 8
[2026-01-12 01:00:36] Checking for CVMFS
[2026-01-12 01:00:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 01:00:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 01:00:36] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 01:00:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 01:00:36] 2.13.3.0 5581 25291 176764 155041 0 303 36130703 39288832 4973 16776704 0 10964031 99.565 15085156 41582 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 01:00:36] CVMFS is ok
[2026-01-12 01:00:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 01:00:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 01:00:36] Further information can be found at the LHC@home message board.
[2026-01-12 01:00:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 01:00:36] Checking for apptainer binary...
[2026-01-12 01:00:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 01:00:36] Running /usr/bin/apptainer --version
[2026-01-12 01:00:37] apptainer version 1.4.5-2.el9
[2026-01-12 01:00:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 01:00:37] c-210-5.aglt2.org
[2026-01-12 01:00:37] apptainer works
[2026-01-12 01:00:37] Set ATHENA_PROC_NUMBER=8
[2026-01-12 01:00:37] Set ATHENA_CORE_NUMBER=8
[2026-01-12 01:00:37] Starting ATLAS job with PandaID=6966749831
[2026-01-12 01:00:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 02:40:08]  *** The last 200 lines of the pilot log: ***
[2026-01-12 02:40:08]  is_tar=False
[2026-01-12 02:40:08]  lfn=log.47962010._003175.job.log.tgz.1
[2026-01-12 02:40:08]  mtime=0
[2026-01-12 02:40:08]  protocol_id=None
[2026-01-12 02:40:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-12 02:40:08]  replicas=None
[2026-01-12 02:40:08]  scope=mc16_13TeV
[2026-01-12 02:40:08]  status=None
[2026-01-12 02:40:08]  status_code=0
[2026-01-12 02:40:08]  storage_token=
[2026-01-12 02:40:08]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6966749831/log.47962010._003175.job.log.tgz.1
[2026-01-12 02:40:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/44/a0/log.47962010._003175.job.log.tgz.1
[2026-01-12 02:40:08]  workdir=None
[2026-01-12 02:40:08] ]
[2026-01-12 02:40:08] 2026-01-12 07:39:30,498 | INFO     | transferring file log.47962010._003175.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6966749831/log.47962010._003175.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-12 02:40:08] 2026-01-12 07:39:30,499 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6966749831/log.47962010._003175.job.log.tgz.1 /tmp/boinchome/slots/1/log.47962010._003175.job
[2026-01-12 02:40:08] 2026-01-12 07:39:30,518 | INFO     | adding to output.list: log.47962010._003175.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/44/a0/log.47962010._003175.job.log.tgz.
[2026-01-12 02:40:08] 2026-01-12 07:39:30,519 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-12 02:40:08] 2026-01-12 07:39:30,519 | INFO     | summary of transferred files:
[2026-01-12 02:40:08] 2026-01-12 07:39:30,519 | INFO     |  -- lfn=log.47962010._003175.job.log.tgz.1, status_code=0, status=transferred
[2026-01-12 02:40:08] 2026-01-12 07:39:30,519 | INFO     | stage-out finished correctly
[2026-01-12 02:40:08] 2026-01-12 07:39:31,036 | INFO     | monitor loop #416: job 0:6966749831 is in state 'finished'
[2026-01-12 02:40:08] 2026-01-12 07:39:31,036 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 02:40:08] 2026-01-12 07:39:31,118 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-12 02:40:08] 2026-01-12 07:39:31,150 | INFO     | time since job start (5924s) is within the limit (349056.0s)
[2026-01-12 02:40:08] 2026-01-12 07:39:31,895 | INFO     | job 6966749831 has state=finished
[2026-01-12 02:40:08] 2026-01-12 07:39:31,896 | INFO     | preparing for final server update for job 6966749831 in state='finished'
[2026-01-12 02:40:08] 2026-01-12 07:39:31,896 | INFO     | this job has now completed (state=finished)
[2026-01-12 02:40:08] 2026-01-12 07:39:31,896 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-12 02:40:08] 2026-01-12 07:39:31,897 | INFO     | log transfer has been attempted: DONE
[2026-01-12 02:40:08] 2026-01-12 07:39:31,897 | INFO     | job 6966749831 has finished - writing final server update
[2026-01-12 02:40:08] 2026-01-12 07:39:31,897 | INFO     | total number of processed events: 50 (read)
[2026-01-12 02:40:08] 2026-01-12 07:39:31,898 | INFO     | executing command: lscpu
[2026-01-12 02:40:08] 2026-01-12 07:39:31,940 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-12 02:40:08] 2026-01-12 07:39:33,162 | INFO     | time since job start (5926s) is within the limit (349056.0s)
[2026-01-12 02:40:08] 2026-01-12 07:39:33,539 | INFO     | monitor loop #417: job 0:6966749831 is in state 'finished'
[2026-01-12 02:40:08] 2026-01-12 07:39:33,539 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 02:40:08] 2026-01-12 07:39:35,167 | INFO     | time since job start (5928s) is within the limit (349056.0s)
[2026-01-12 02:40:08] 2026-01-12 07:39:35,777 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-12 02:40:08] 2026-01-12 07:39:35,784 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2619.8357499999997
[2026-01-12 02:40:08] 2026-01-12 07:39:35,790 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6966749831/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 02:40:08] 2026-01-12 07:39:35,791 | INFO     | extracted standard info from prmon json
[2026-01-12 02:40:08] 2026-01-12 07:39:35,791 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 02:40:08] 2026-01-12 07:39:35,792 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 02:40:08] 2026-01-12 07:39:35,794 | INFO     | fitting pss+swap vs Time
[2026-01-12 02:40:08] 2026-01-12 07:39:35,795 | INFO     | sum of square deviations: 226143137.82222202
[2026-01-12 02:40:08] 2026-01-12 07:39:35,795 | INFO     | sum of deviations: -1410778884.77778
[2026-01-12 02:40:08] 2026-01-12 07:39:35,795 | INFO     | mean x: 1768200694.0444446
[2026-01-12 02:40:08] 2026-01-12 07:39:35,796 | INFO     | mean y: 2550860.9444444445
[2026-01-12 02:40:08] 2026-01-12 07:39:35,796 | INFO     | intersect: 11033352976.94034
[2026-01-12 02:40:08] 2026-01-12 07:39:35,796 | INFO     | chi2: 0.5082258565356034
[2026-01-12 02:40:08] 2026-01-12 07:39:35,796 | INFO     | current memory leak: -6.24 B/s (using 90 data points, chi2=0.51)
[2026-01-12 02:40:08] 2026-01-12 07:39:35,797 | INFO     | could have reported an average CPU frequency of 2602 MHz (7 samples)
[2026-01-12 02:40:08] 2026-01-12 07:39:35,797 | INFO     | ..............................
[2026-01-12 02:40:08] 2026-01-12 07:39:35,797 | INFO     | . Timing measurements:
[2026-01-12 02:40:08] 2026-01-12 07:39:35,797 | INFO     | . get job = 0 s
[2026-01-12 02:40:08] 2026-01-12 07:39:35,797 | INFO     | . initial setup = 2 s
[2026-01-12 02:40:08] 2026-01-12 07:39:35,797 | INFO     | . payload setup = 5 s
[2026-01-12 02:40:08] 2026-01-12 07:39:35,797 | INFO     | . stage-in = 0 s
[2026-01-12 02:40:08] 2026-01-12 07:39:35,798 | INFO     | . payload execution = 5896 s
[2026-01-12 02:40:08] 2026-01-12 07:39:35,798 | INFO     | . stage-out = 0 s
[2026-01-12 02:40:08] 2026-01-12 07:39:35,798 | INFO     | . log creation = 0 s
[2026-01-12 02:40:08] 2026-01-12 07:39:35,798 | INFO     | ..............................
[2026-01-12 02:40:08] 2026-01-12 07:39:36,291 | INFO     | 
[2026-01-12 02:40:08] 2026-01-12 07:39:36,292 | INFO     | job summary report
[2026-01-12 02:40:08] 2026-01-12 07:39:36,292 | INFO     | --------------------------------------------------
[2026-01-12 02:40:08] 2026-01-12 07:39:36,292 | INFO     | PanDA job id: 6966749831
[2026-01-12 02:40:08] 2026-01-12 07:39:36,292 | INFO     | task id: 47962010
[2026-01-12 02:40:08] 2026-01-12 07:39:36,292 | INFO     | errors: (none)
[2026-01-12 02:40:08] 2026-01-12 07:39:36,292 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 02:40:08] 2026-01-12 07:39:36,292 | INFO     | pilot state: finished 
[2026-01-12 02:40:08] 2026-01-12 07:39:36,292 | INFO     | transexitcode: 0
[2026-01-12 02:40:08] 2026-01-12 07:39:36,292 | INFO     | exeerrorcode: 0
[2026-01-12 02:40:08] 2026-01-12 07:39:36,292 | INFO     | exeerrordiag: 
[2026-01-12 02:40:08] 2026-01-12 07:39:36,292 | INFO     | exitcode: 0
[2026-01-12 02:40:08] 2026-01-12 07:39:36,293 | INFO     | exitmsg: OK
[2026-01-12 02:40:08] 2026-01-12 07:39:36,293 | INFO     | cpuconsumptiontime: 18226 s
[2026-01-12 02:40:08] 2026-01-12 07:39:36,293 | INFO     | nevents: 50
[2026-01-12 02:40:08] 2026-01-12 07:39:36,293 | INFO     | neventsw: 0
[2026-01-12 02:40:08] 2026-01-12 07:39:36,293 | INFO     | pid: 103632
[2026-01-12 02:40:08] 2026-01-12 07:39:36,293 | INFO     | pgrp: 103632
[2026-01-12 02:40:08] 2026-01-12 07:39:36,293 | INFO     | corecount: 8
[2026-01-12 02:40:08] 2026-01-12 07:39:36,293 | INFO     | event service: False
[2026-01-12 02:40:08] 2026-01-12 07:39:36,293 | INFO     | sizes: {0: 2284396, 1: 2284595, 5: 2284857, 11: 2284913, 5905: 2312544, 5906: 2312543, 5908: 2321721, 5909: 2321777, 5913: 2322023}
[2026-01-12 02:40:08] 2026-01-12 07:39:36,293 | INFO     | --------------------------------------------------
[2026-01-12 02:40:08] 2026-01-12 07:39:36,293 | INFO     | 
[2026-01-12 02:40:08] 2026-01-12 07:39:36,294 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-12 02:40:08] 2026-01-12 07:39:36,311 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,312 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,312 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,312 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,312 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,312 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,312 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,312 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,312 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,313 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,313 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,313 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,313 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,313 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,313 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,313 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 02:40:08] 2026-01-12 07:39:36,313 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,313 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 02:40:08] 2026-01-12 07:39:36,313 | INFO     | job 6966749831 has completed (purged errors)
[2026-01-12 02:40:08] 2026-01-12 07:39:36,314 | INFO     | overall cleanup function is called
[2026-01-12 02:40:08] 2026-01-12 07:39:37,327 | INFO     | --- collectZombieJob: --- 10, [103632]
[2026-01-12 02:40:08] 2026-01-12 07:39:37,327 | INFO     | zombie collector waiting for pid 103632
[2026-01-12 02:40:08] 2026-01-12 07:39:37,328 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 02:40:08] 2026-01-12 07:39:37,328 | INFO     | collected zombie processes
[2026-01-12 02:40:08] 2026-01-12 07:39:37,328 | INFO     | will attempt to kill all subprocesses of pid=103632
[2026-01-12 02:40:08] 2026-01-12 07:39:37,567 | INFO     | process IDs to be killed: [103632] (in reverse order)
[2026-01-12 02:40:08] 2026-01-12 07:39:37,629 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 02:40:08] 2026-01-12 07:39:37,630 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 02:40:08] 2026-01-12 07:39:37,637 | INFO     | did not find any defunct processes belonging to 103632
[2026-01-12 02:40:08] 2026-01-12 07:39:37,644 | INFO     | did not find any defunct processes belonging to 103632
[2026-01-12 02:40:08] 2026-01-12 07:39:37,645 | INFO     | ready for new job
[2026-01-12 02:40:08] 2026-01-12 07:39:37,645 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 02:40:08] 2026-01-12 07:39:37,647 | INFO     | ***************************************
[2026-01-12 02:40:08] 2026-01-12 07:39:37,647 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 02:40:08] 2026-01-12 07:39:37,647 | INFO     | ***************************************
[2026-01-12 02:40:08] 2026-01-12 07:39:37,647 | INFO     | 
[2026-01-12 02:40:08] 2026-01-12 07:39:37,649 | INFO     | architecture information:
[2026-01-12 02:40:08] 2026-01-12 07:39:37,650 | INFO     | executing command: cat /etc/os-release
[2026-01-12 02:40:08] 2026-01-12 07:39:37,665 | INFO     | cat /etc/os-release:
[2026-01-12 02:40:08] NAME="CentOS Linux"
[2026-01-12 02:40:08] VERSION="7 (Core)"
[2026-01-12 02:40:08] ID="centos"
[2026-01-12 02:40:08] ID_LIKE="rhel fedora"
[2026-01-12 02:40:08] VERSION_ID="7"
[2026-01-12 02:40:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 02:40:08] ANSI_COLOR="0;31"
[2026-01-12 02:40:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 02:40:08] HOME_URL="https://www.centos.org/"
[2026-01-12 02:40:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 02:40:08] 
[2026-01-12 02:40:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 02:40:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 02:40:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 02:40:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 02:40:08] 
[2026-01-12 02:40:08] 2026-01-12 07:39:37,665 | INFO     | ***************************************
[2026-01-12 02:40:08] 2026-01-12 07:39:38,167 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-12 02:40:08] 2026-01-12 07:39:38,181 | INFO     | sufficient remaining disk space (53616836608 B)
[2026-01-12 02:40:08] 2026-01-12 07:39:38,181 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 02:40:08] 2026-01-12 07:39:38,182 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 02:40:08] 2026-01-12 07:39:38,182 | INFO     | update_server=False
[2026-01-12 02:40:08] 2026-01-12 07:39:38,182 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 02:40:08] 2026-01-12 07:39:38,182 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 02:40:08] 2026-01-12 07:39:38,428 | INFO     | all data control threads have been joined
[2026-01-12 02:40:08] 2026-01-12 07:39:38,545 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-12 02:40:08] 2026-01-12 07:39:38,546 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-12 02:40:08] 2026-01-12 07:39:38,546 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 02:40:08] 2026-01-12 07:39:38,546 | INFO     | will abort loop
[2026-01-12 02:40:08] 2026-01-12 07:39:38,634 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 02:40:08] 2026-01-12 07:39:39,093 | INFO     | all job control threads have been joined
[2026-01-12 02:40:08] 2026-01-12 07:39:39,182 | INFO     | [job] retrieve thread has finished
[2026-01-12 02:40:08] 2026-01-12 07:39:39,278 | INFO     | all payload control threads have been joined
[2026-01-12 02:40:08] 2026-01-12 07:39:39,434 | INFO     | [data] control thread has finished
[2026-01-12 02:40:08] 2026-01-12 07:39:39,441 | INFO     | [payload] validate_post thread has finished
[2026-01-12 02:40:08] 2026-01-12 07:39:39,551 | INFO     | [job] validate thread has finished
[2026-01-12 02:40:08] 2026-01-12 07:39:39,551 | INFO     | [job] job monitor thread has finished
[2026-01-12 02:40:08] 2026-01-12 07:39:39,667 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 02:40:08] 2026-01-12 07:39:39,770 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 02:40:08] 2026-01-12 07:39:40,099 | INFO     | [job] control thread has finished
[2026-01-12 02:40:08] 2026-01-12 07:39:40,104 | INFO     | [payload] failed_post thread has finished
[2026-01-12 02:40:08] 2026-01-12 07:39:40,280 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 02:40:08] 2026-01-12 07:39:40,283 | INFO     | [payload] control thread has finished
[2026-01-12 02:40:08] 2026-01-12 07:39:40,342 | INFO     | [data] copytool_in thread has finished
[2026-01-12 02:40:08] 2026-01-12 07:39:40,639 | INFO     | [data] copytool_out thread has finished
[2026-01-12 02:40:08] 2026-01-12 07:39:40,687 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 02:40:08] 2026-01-12 07:39:40,914 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 02:40:08] 2026-01-12 07:39:41,919 | INFO     | [job] queue monitor thread has finished
[2026-01-12 02:40:08] 2026-01-12 07:39:42,188 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 02:40:08] 2026-01-12 07:39:57,044 | INFO     | [monitor] cgroup control has ended
[2026-01-12 02:40:08] 2026-01-12 07:39:58,729 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140429197907776)>', '<ExcThread(monitor, started 140428837902080)>']
[2026-01-12 02:40:08] 2026-01-12 07:40:03,754 | INFO     | all workflow threads have been joined
[2026-01-12 02:40:08] 2026-01-12 07:40:03,755 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 02:40:08] 2026-01-12 07:40:03,755 | INFO     | traces error code: 0
[2026-01-12 02:40:08] 2026-01-12 07:40:03,755 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 02:40:08] 2026-01-12 07:40:08,522 | INFO     | PID=86499 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-12 02:40:08] 2026-01-12 07:40:08,522 | INFO     | .. there are 6 such processes running
[2026-01-12 02:40:08] 2026-01-12 07:40:08,523 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 02:40:08] 2026-01-12 07:40:08,523 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 02:40:08] 2026-01-12 07:40:08,523 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 02:40:08] 2026-01-12 07:40:08,523 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 02:40:08] 2026-01-12 07:40:08,523 | INFO     | [monitor] control thread has ended
[2026-01-12 02:40:08] 2026-01-12 07:40:08,615 [wrapper] ==== pilot stdout END ====
[2026-01-12 02:40:08] 2026-01-12 07:40:08,617 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 02:40:08] 2026-01-12 07:40:08,619 [wrapper] pilotpid: 86499
[2026-01-12 02:40:08] 2026-01-12 07:40:08,622 [wrapper] Pilot exit status: 0
[2026-01-12 02:40:08] 2026-01-12 07:40:08,630 [wrapper] pandaids: 6966749831
[2026-01-12 02:40:08] 2026-01-12 07:40:08,672 [wrapper] cleanup supervisor_pilot  219919 86500
[2026-01-12 02:40:08] 2026-01-12 07:40:08,675 [wrapper] Test setup, not cleaning
[2026-01-12 02:40:08] 2026-01-12 07:40:08,677 [wrapper] apfmon messages muted
[2026-01-12 02:40:08] 2026-01-12 07:40:08,680 [wrapper] ==== wrapper stdout END ====
[2026-01-12 02:40:08] 2026-01-12 07:40:08,683 [wrapper] ==== wrapper stderr END ====
[2026-01-12 02:40:08]  *** Error codes and diagnostics ***
[2026-01-12 02:40:08]     "exeErrorCode": 0,
[2026-01-12 02:40:08]     "exeErrorDiag": "",
[2026-01-12 02:40:08]     "pilotErrorCode": 0,
[2026-01-12 02:40:08]     "pilotErrorDiag": "",
[2026-01-12 02:40:08]  *** Listing of results directory ***
[2026-01-12 02:40:08] total 435376
[2026-01-12 02:40:08] -rw-r--r--. 1 boincer umatlas    579449 Jan 12 00:41 pilot3.tar.gz
[2026-01-12 02:40:08] -rwx------. 1 boincer umatlas     36322 Jan 12 00:59 runpilot2-wrapper.sh
[2026-01-12 02:40:08] -rw-r--r--. 1 boincer umatlas      5112 Jan 12 00:59 queuedata.json
[2026-01-12 02:40:08] -rw-r--r--. 1 boincer umatlas       100 Jan 12 01:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 02:40:08] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 12 01:00 run_atlas
[2026-01-12 02:40:08] -rw-r--r--. 1 boincer umatlas       105 Jan 12 01:00 job.xml
[2026-01-12 02:40:08] -rw-r--r--. 2 boincer umatlas 392494414 Jan 12 01:00 EVNT.47962006._000057.pool.root.1
[2026-01-12 02:40:08] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 01:00 start_atlas.sh
[2026-01-12 02:40:08] drwxrwx--x. 2 boincer umatlas      4096 Jan 12 01:00 shared
[2026-01-12 02:40:08] -rw-r--r--. 2 boincer umatlas    592617 Jan 12 01:00 input.tar.gz
[2026-01-12 02:40:08] -rw-r--r--. 1 boincer umatlas         0 Jan 12 01:00 boinc_lockfile
[2026-01-12 02:40:08] -rw-r--r--. 1 boincer umatlas      2888 Jan 12 01:00 pandaJob.out
[2026-01-12 02:40:08] -rw-------. 1 boincer umatlas        57 Jan 12 01:00 setup.sh.local
[2026-01-12 02:40:08] -rw-------. 1 boincer umatlas    990050 Jan 12 01:00 agis_schedconf.cvmfs.json
[2026-01-12 02:40:08] -rw-------. 1 boincer umatlas   1516240 Jan 12 01:00 agis_ddmendpoints.agis.ALL.json
[2026-01-12 02:40:08] drwx------. 5 boincer umatlas      4096 Jan 12 01:00 pilot3
[2026-01-12 02:40:08] -rw-r--r--. 1 boincer umatlas       529 Jan 12 02:30 boinc_task_state.xml
[2026-01-12 02:40:08] -rw-r--r--. 1 boincer umatlas      6658 Jan 12 02:30 init_data.xml
[2026-01-12 02:40:08] -rw-------. 1 boincer umatlas  45256805 Jan 12 02:39 HITS.47962010._003175.pool.root.1
[2026-01-12 02:40:08] -rw-------. 1 boincer umatlas      1039 Jan 12 02:39 memory_monitor_summary.json
[2026-01-12 02:40:08] -rw-------. 1 boincer umatlas        95 Jan 12 02:39 pilot_heartbeat.json
[2026-01-12 02:40:08] -rw-------. 1 boincer umatlas   1221510 Jan 12 02:39 log.47962010._003175.job.log.tgz.1
[2026-01-12 02:40:08] -rw-------. 1 boincer umatlas      8570 Jan 12 02:39 heartbeat.json
[2026-01-12 02:40:08] -rw-r--r--. 1 boincer umatlas      8192 Jan 12 02:40 boinc_mmap_file
[2026-01-12 02:40:08] -rw-r--r--. 1 boincer umatlas        27 Jan 12 02:40 wrapper_checkpoint.txt
[2026-01-12 02:40:08] -rw-------. 1 boincer umatlas       820 Jan 12 02:40 pilotlog.txt
[2026-01-12 02:40:08] -rw-------. 1 boincer umatlas    858616 Jan 12 02:40 log.47962010._003175.job.log.1
[2026-01-12 02:40:08] -rw-------. 1 boincer umatlas       353 Jan 12 02:40 output.list
[2026-01-12 02:40:08] -rw-r--r--. 1 boincer umatlas       620 Jan 12 02:40 runtime_log
[2026-01-12 02:40:08] -rw-------. 1 boincer umatlas   2099200 Jan 12 02:40 result.tar.gz
[2026-01-12 02:40:08] -rw-------. 1 boincer umatlas       651 Jan 12 02:40 zUELDm08Pz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmM5mKDmZ3G6Ro.diag
[2026-01-12 02:40:08] -rw-r--r--. 1 boincer umatlas      9337 Jan 12 02:40 runtime_log.err
[2026-01-12 02:40:08] -rw-r--r--. 1 boincer umatlas     21654 Jan 12 02:40 stderr.txt
[2026-01-12 02:40:08] HITS file was successfully produced:
[2026-01-12 02:40:08] -rw-------. 1 boincer umatlas 45256805 Jan 12 02:39 shared/HITS.pool.root.1
[2026-01-12 02:40:08]  *** Contents of shared directory: ***
[2026-01-12 02:40:08] total 430144
[2026-01-12 02:40:08] -rw-r--r--. 2 boincer umatlas 392494414 Jan 12 01:00 ATLAS.root_0
[2026-01-12 02:40:08] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 01:00 start_atlas.sh
[2026-01-12 02:40:08] -rw-r--r--. 2 boincer umatlas    592617 Jan 12 01:00 input.tar.gz
[2026-01-12 02:40:08] -rw-------. 1 boincer umatlas  45256805 Jan 12 02:39 HITS.pool.root.1
[2026-01-12 02:40:08] -rw-------. 1 boincer umatlas   2099200 Jan 12 02:40 result.tar.gz
02:40:10 (80716): run_atlas exited; CPU time 18269.049770
02:40:10 (80716): called boinc_finish(0)

</stderr_txt>
]]>

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