Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:02:48 (2929178): wrapper (7.7.26015): starting
21:02:48 (2929178): wrapper: running run_atlas (--nthreads 9)
[2026-01-11 21:02:48] Arguments: --nthreads 9
[2026-01-11 21:02:48] Threads: 9
[2026-01-11 21:02:48] Checking for CVMFS
[2026-01-11 21:02:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 21:02:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 21:02:49] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 21:02:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 21:02:50] 2.13.3.0 12977 97102 609492 155035 2 448 31746988 32935936 23497 16776704 0 423295081 99.549 512120476 33645 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-11 21:02:50] CVMFS is ok
[2026-01-11 21:02:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 21:02:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 21:02:50] Further information can be found at the LHC@home message board.
[2026-01-11 21:02:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 21:02:50] Checking for apptainer binary...
[2026-01-11 21:02:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 21:02:50] Running /usr/bin/apptainer --version
[2026-01-11 21:02:50] apptainer version 1.4.5-2.el9
[2026-01-11 21:02:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 21:02:51] c6-12-29-1.aglt2.org
[2026-01-11 21:02:51] apptainer works
[2026-01-11 21:02:51] Set ATHENA_PROC_NUMBER=9
[2026-01-11 21:02:51] Set ATHENA_CORE_NUMBER=9
[2026-01-11 21:02:51] Starting ATLAS job with PandaID=6966591949
[2026-01-11 21:02:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 22:31:06]  *** The last 200 lines of the pilot log: ***
[2026-01-11 22:31:06]  lfn=log.47962010._003164.job.log.tgz.1
[2026-01-11 22:31:06]  mtime=0
[2026-01-11 22:31:06]  protocol_id=None
[2026-01-11 22:31:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-11 22:31:06]  replicas=None
[2026-01-11 22:31:06]  scope=mc16_13TeV
[2026-01-11 22:31:06]  status=None
[2026-01-11 22:31:06]  status_code=0
[2026-01-11 22:31:06]  storage_token=
[2026-01-11 22:31:06]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6966591949/log.47962010._003164.job.log.tgz.1
[2026-01-11 22:31:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/bc/76/log.47962010._003164.job.log.tgz.1
[2026-01-11 22:31:06]  workdir=None
[2026-01-11 22:31:06] ]
[2026-01-11 22:31:06] 2026-01-12 03:30:22,395 | INFO     | transferring file log.47962010._003164.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6966591949/log.47962010._003164.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-11 22:31:06] 2026-01-12 03:30:22,395 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6966591949/log.47962010._003164.job.log.tgz.1 /tmp/boinchome/slots/3/log.47962010._003164.job
[2026-01-11 22:31:06] 2026-01-12 03:30:22,419 | INFO     | adding to output.list: log.47962010._003164.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/bc/76/log.47962010._003164.job.log.tgz.
[2026-01-11 22:31:06] 2026-01-12 03:30:22,420 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 22:31:06] 2026-01-12 03:30:22,420 | INFO     | summary of transferred files:
[2026-01-11 22:31:06] 2026-01-12 03:30:22,420 | INFO     |  -- lfn=log.47962010._003164.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 22:31:06] 2026-01-12 03:30:22,420 | INFO     | stage-out finished correctly
[2026-01-11 22:31:06] 2026-01-12 03:30:22,978 | INFO     | monitor loop #333: job 0:6966591949 is in state 'finished'
[2026-01-11 22:31:06] 2026-01-12 03:30:22,979 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 22:31:06] 2026-01-12 03:30:23,993 | INFO     | time since job start (5192s) is within the limit (349056.0s)
[2026-01-11 22:31:06] 2026-01-12 03:30:24,308 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 22:31:06] 2026-01-12 03:30:24,401 | INFO     | job 6966591949 has state=finished
[2026-01-11 22:31:06] 2026-01-12 03:30:24,401 | INFO     | preparing for final server update for job 6966591949 in state='finished'
[2026-01-11 22:31:06] 2026-01-12 03:30:24,402 | INFO     | this job has now completed (state=finished)
[2026-01-11 22:31:06] 2026-01-12 03:30:24,402 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 22:31:06] 2026-01-12 03:30:24,402 | INFO     | log transfer has been attempted: DONE
[2026-01-11 22:31:06] 2026-01-12 03:30:24,402 | INFO     | job 6966591949 has finished - writing final server update
[2026-01-11 22:31:06] 2026-01-12 03:30:24,402 | INFO     | total number of processed events: 50 (read)
[2026-01-11 22:31:06] 2026-01-12 03:30:24,407 | INFO     | executing command: lscpu
[2026-01-11 22:31:06] 2026-01-12 03:30:24,453 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 22:31:06] 2026-01-12 03:30:25,482 | INFO     | monitor loop #334: job 0:6966591949 is in state 'finished'
[2026-01-11 22:31:06] 2026-01-12 03:30:25,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 22:31:06] 2026-01-12 03:30:25,998 | INFO     | time since job start (5194s) is within the limit (349056.0s)
[2026-01-11 22:31:06] 2026-01-12 03:30:27,985 | INFO     | monitor loop #335: job 0:6966591949 is in state 'finished'
[2026-01-11 22:31:06] 2026-01-12 03:30:27,986 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 22:31:06] 2026-01-12 03:30:28,004 | INFO     | time since job start (5197s) is within the limit (349056.0s)
[2026-01-11 22:31:06] 2026-01-12 03:30:28,806 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-11 22:31:06] 2026-01-12 03:30:28,812 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2665.8593541666664
[2026-01-11 22:31:06] 2026-01-12 03:30:28,830 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6966591949/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 22:31:06] 2026-01-12 03:30:28,831 | INFO     | extracted standard info from prmon json
[2026-01-11 22:31:06] 2026-01-12 03:30:28,831 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 22:31:06] 2026-01-12 03:30:28,831 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 22:31:06] 2026-01-12 03:30:28,833 | INFO     | fitting pss+swap vs Time
[2026-01-11 22:31:06] 2026-01-12 03:30:28,834 | INFO     | sum of square deviations: 136124228.6315792
[2026-01-11 22:31:06] 2026-01-12 03:30:28,834 | INFO     | sum of deviations: 13601251009.684212
[2026-01-11 22:31:06] 2026-01-12 03:30:28,834 | INFO     | mean x: 1768186170.7894738
[2026-01-11 22:31:06] 2026-01-12 03:30:28,834 | INFO     | mean y: 2620073.6052631577
[2026-01-11 22:31:06] 2026-01-12 03:30:28,835 | INFO     | intersect: -176670880173.36536
[2026-01-11 22:31:06] 2026-01-12 03:30:28,835 | INFO     | chi2: 1.4620463914296504
[2026-01-11 22:31:06] 2026-01-12 03:30:28,835 | INFO     | current memory leak: 99.92 B/s (using 76 data points, chi2=1.46)
[2026-01-11 22:31:06] 2026-01-12 03:30:28,835 | INFO     | could have reported an average CPU frequency of 2672 MHz (6 samples)
[2026-01-11 22:31:06] 2026-01-12 03:30:28,835 | INFO     | ..............................
[2026-01-11 22:31:06] 2026-01-12 03:30:28,836 | INFO     | . Timing measurements:
[2026-01-11 22:31:06] 2026-01-12 03:30:28,836 | INFO     | . get job = 0 s
[2026-01-11 22:31:06] 2026-01-12 03:30:28,836 | INFO     | . initial setup = 3 s
[2026-01-11 22:31:06] 2026-01-12 03:30:28,836 | INFO     | . payload setup = 40 s
[2026-01-11 22:31:06] 2026-01-12 03:30:28,836 | INFO     | . stage-in = 0 s
[2026-01-11 22:31:06] 2026-01-12 03:30:28,836 | INFO     | . payload execution = 5072 s
[2026-01-11 22:31:06] 2026-01-12 03:30:28,836 | INFO     | . stage-out = 0 s
[2026-01-11 22:31:06] 2026-01-12 03:30:28,836 | INFO     | . log creation = 0 s
[2026-01-11 22:31:06] 2026-01-12 03:30:28,836 | INFO     | ..............................
[2026-01-11 22:31:06] 2026-01-12 03:30:28,951 | INFO     | 
[2026-01-11 22:31:06] 2026-01-12 03:30:28,952 | INFO     | job summary report
[2026-01-11 22:31:06] 2026-01-12 03:30:28,952 | INFO     | --------------------------------------------------
[2026-01-11 22:31:06] 2026-01-12 03:30:28,952 | INFO     | PanDA job id: 6966591949
[2026-01-11 22:31:06] 2026-01-12 03:30:28,952 | INFO     | task id: 47962010
[2026-01-11 22:31:06] 2026-01-12 03:30:28,952 | INFO     | errors: (none)
[2026-01-11 22:31:06] 2026-01-12 03:30:28,952 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 22:31:06] 2026-01-12 03:30:28,952 | INFO     | pilot state: finished 
[2026-01-11 22:31:06] 2026-01-12 03:30:28,952 | INFO     | transexitcode: 0
[2026-01-11 22:31:06] 2026-01-12 03:30:28,952 | INFO     | exeerrorcode: 0
[2026-01-11 22:31:06] 2026-01-12 03:30:28,952 | INFO     | exeerrordiag: 
[2026-01-11 22:31:06] 2026-01-12 03:30:28,952 | INFO     | exitcode: 0
[2026-01-11 22:31:06] 2026-01-12 03:30:28,953 | INFO     | exitmsg: OK
[2026-01-11 22:31:06] 2026-01-12 03:30:28,953 | INFO     | cpuconsumptiontime: 17335 s
[2026-01-11 22:31:06] 2026-01-12 03:30:28,953 | INFO     | nevents: 50
[2026-01-11 22:31:06] 2026-01-12 03:30:28,953 | INFO     | neventsw: 0
[2026-01-11 22:31:06] 2026-01-12 03:30:28,953 | INFO     | pid: 2941551
[2026-01-11 22:31:06] 2026-01-12 03:30:28,953 | INFO     | pgrp: 2941551
[2026-01-11 22:31:06] 2026-01-12 03:30:28,955 | INFO     | corecount: 9
[2026-01-11 22:31:06] 2026-01-12 03:30:28,955 | INFO     | event service: False
[2026-01-11 22:31:06] 2026-01-12 03:30:28,955 | INFO     | sizes: {0: 2284341, 1: 2284397, 2: 2284425, 3: 2284652, 14: 2284652, 25: 2284680, 36: 2284836, 39: 2285126, 46: 2285154, 5116: 2312140, 5118: 2321134, 5119: 232147
[2026-01-11 22:31:06] 2026-01-12 03:30:28,955 | INFO     | --------------------------------------------------
[2026-01-11 22:31:06] 2026-01-12 03:30:28,955 | INFO     | 
[2026-01-11 22:31:06] 2026-01-12 03:30:28,955 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-11 22:31:06] 2026-01-12 03:30:28,977 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,978 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,978 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,978 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,978 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,978 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,978 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,978 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,978 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,979 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,979 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,979 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,979 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,979 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,979 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,979 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,979 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,979 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 22:31:06] 2026-01-12 03:30:28,979 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,979 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 22:31:06] 2026-01-12 03:30:28,980 | INFO     | job 6966591949 has completed (purged errors)
[2026-01-11 22:31:06] 2026-01-12 03:30:28,980 | INFO     | overall cleanup function is called
[2026-01-11 22:31:06] 2026-01-12 03:30:29,995 | INFO     | --- collectZombieJob: --- 10, [2941551]
[2026-01-11 22:31:06] 2026-01-12 03:30:29,995 | INFO     | zombie collector waiting for pid 2941551
[2026-01-11 22:31:06] 2026-01-12 03:30:29,995 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 22:31:06] 2026-01-12 03:30:29,995 | INFO     | collected zombie processes
[2026-01-11 22:31:06] 2026-01-12 03:30:29,995 | INFO     | will attempt to kill all subprocesses of pid=2941551
[2026-01-11 22:31:06] 2026-01-12 03:30:30,399 | INFO     | process IDs to be killed: [2941551] (in reverse order)
[2026-01-11 22:31:06] 2026-01-12 03:30:30,528 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 22:31:06] 2026-01-12 03:30:30,528 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 22:31:06] 2026-01-12 03:30:30,545 | INFO     | did not find any defunct processes belonging to 2941551
[2026-01-11 22:31:06] 2026-01-12 03:30:30,561 | INFO     | did not find any defunct processes belonging to 2941551
[2026-01-11 22:31:06] 2026-01-12 03:30:30,562 | INFO     | ready for new job
[2026-01-11 22:31:06] 2026-01-12 03:30:30,562 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 22:31:06] 2026-01-12 03:30:30,563 | INFO     | ***************************************
[2026-01-11 22:31:06] 2026-01-12 03:30:30,564 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 22:31:06] 2026-01-12 03:30:30,564 | INFO     | ***************************************
[2026-01-11 22:31:06] 2026-01-12 03:30:30,564 | INFO     | 
[2026-01-11 22:31:06] 2026-01-12 03:30:30,569 | INFO     | architecture information:
[2026-01-11 22:31:06] 2026-01-12 03:30:30,570 | INFO     | executing command: cat /etc/os-release
[2026-01-11 22:31:06] 2026-01-12 03:30:30,588 | INFO     | cat /etc/os-release:
[2026-01-11 22:31:06] NAME="CentOS Linux"
[2026-01-11 22:31:06] VERSION="7 (Core)"
[2026-01-11 22:31:06] ID="centos"
[2026-01-11 22:31:06] ID_LIKE="rhel fedora"
[2026-01-11 22:31:06] VERSION_ID="7"
[2026-01-11 22:31:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 22:31:06] ANSI_COLOR="0;31"
[2026-01-11 22:31:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 22:31:06] HOME_URL="https://www.centos.org/"
[2026-01-11 22:31:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 22:31:06] 
[2026-01-11 22:31:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 22:31:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 22:31:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 22:31:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 22:31:06] 
[2026-01-11 22:31:06] 2026-01-12 03:30:30,589 | INFO     | ***************************************
[2026-01-11 22:31:06] 2026-01-12 03:30:31,092 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-11 22:31:06] 2026-01-12 03:30:31,111 | INFO     | sufficient remaining disk space (96359940096 B)
[2026-01-11 22:31:06] 2026-01-12 03:30:31,112 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 22:31:06] 2026-01-12 03:30:31,112 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 22:31:06] 2026-01-12 03:30:31,112 | INFO     | update_server=False
[2026-01-11 22:31:06] 2026-01-12 03:30:31,112 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 22:31:06] 2026-01-12 03:30:31,112 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 22:31:06] 2026-01-12 03:30:31,112 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 22:31:06] 2026-01-12 03:30:31,318 | INFO     | all data control threads have been joined
[2026-01-11 22:31:06] 2026-01-12 03:30:31,493 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 22:31:06] 2026-01-12 03:30:31,494 | INFO     | aborting loop
[2026-01-11 22:31:06] 2026-01-12 03:30:31,666 | INFO     | all job control threads have been joined
[2026-01-11 22:31:06] 2026-01-12 03:30:31,857 | INFO     | all payload control threads have been joined
[2026-01-11 22:31:06] 2026-01-12 03:30:32,117 | INFO     | [job] retrieve thread has finished
[2026-01-11 22:31:06] 2026-01-12 03:30:32,324 | INFO     | [data] control thread has finished
[2026-01-11 22:31:06] 2026-01-12 03:30:32,499 | INFO     | [job] job monitor thread has finished
[2026-01-11 22:31:06] 2026-01-12 03:30:32,671 | INFO     | [job] control thread has finished
[2026-01-11 22:31:06] 2026-01-12 03:30:32,767 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 22:31:06] 2026-01-12 03:30:32,789 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 22:31:06] 2026-01-12 03:30:32,863 | INFO     | [payload] control thread has finished
[2026-01-11 22:31:06] 2026-01-12 03:30:32,939 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 22:31:06] 2026-01-12 03:30:33,118 | INFO     | [data] copytool_out thread has finished
[2026-01-11 22:31:06] 2026-01-12 03:30:33,325 | INFO     | [job] validate thread has finished
[2026-01-11 22:31:06] 2026-01-12 03:30:33,329 | INFO     | [data] copytool_in thread has finished
[2026-01-11 22:31:06] 2026-01-12 03:30:33,647 | INFO     | [payload] failed_post thread has finished
[2026-01-11 22:31:06] 2026-01-12 03:30:33,688 | INFO     | [payload] validate_post thread has finished
[2026-01-11 22:31:06] 2026-01-12 03:30:33,944 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 22:31:06] 2026-01-12 03:30:34,949 | INFO     | [job] queue monitor thread has finished
[2026-01-11 22:31:06] 2026-01-12 03:30:35,118 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 22:31:06] 2026-01-12 03:30:41,452 | INFO     | job.realtimelogging is not enabled
[2026-01-11 22:31:06] 2026-01-12 03:30:42,458 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 22:31:06] 2026-01-12 03:30:59,879 | INFO     | [monitor] cgroup control has ended
[2026-01-11 22:31:06] 2026-01-12 03:31:01,360 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140370163963712)>', '<ExcThread(monitor, started 140369522059008)>']
[2026-01-11 22:31:06] 2026-01-12 03:31:01,576 | INFO     | PID=2934372 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 22:31:06] 2026-01-12 03:31:01,577 | INFO     | .. there are 20 such processes running
[2026-01-11 22:31:06] 2026-01-12 03:31:01,578 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 22:31:06] 2026-01-12 03:31:01,578 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 22:31:06] 2026-01-12 03:31:01,578 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 22:31:06] 2026-01-12 03:31:01,578 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 22:31:06] 2026-01-12 03:31:01,578 | INFO     | [monitor] control thread has ended
[2026-01-11 22:31:06] 2026-01-12 03:31:06,379 | INFO     | all workflow threads have been joined
[2026-01-11 22:31:06] 2026-01-12 03:31:06,381 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 22:31:06] 2026-01-12 03:31:06,381 | INFO     | traces error code: 0
[2026-01-11 22:31:06] 2026-01-12 03:31:06,382 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 22:31:06] 2026-01-12 03:31:06,604 [wrapper] ==== pilot stdout END ====
[2026-01-11 22:31:06] 2026-01-12 03:31:06,607 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 22:31:06] 2026-01-12 03:31:06,610 [wrapper] pilotpid: 2934372
[2026-01-11 22:31:06] 2026-01-12 03:31:06,612 [wrapper] Pilot exit status: 0
[2026-01-11 22:31:06] 2026-01-12 03:31:06,621 [wrapper] pandaids: 6966591949
[2026-01-11 22:31:06] 2026-01-12 03:31:06,711 [wrapper] cleanup supervisor_pilot 3115786 2934373
[2026-01-11 22:31:06] 2026-01-12 03:31:06,714 [wrapper] Test setup, not cleaning
[2026-01-11 22:31:06] 2026-01-12 03:31:06,717 [wrapper] apfmon messages muted
[2026-01-11 22:31:06] 2026-01-12 03:31:06,720 [wrapper] ==== wrapper stdout END ====
[2026-01-11 22:31:06] 2026-01-12 03:31:06,722 [wrapper] ==== wrapper stderr END ====
[2026-01-11 22:31:06]  *** Error codes and diagnostics ***
[2026-01-11 22:31:06]     "exeErrorCode": 0,
[2026-01-11 22:31:06]     "exeErrorDiag": "",
[2026-01-11 22:31:06]     "pilotErrorCode": 0,
[2026-01-11 22:31:06]     "pilotErrorDiag": "",
[2026-01-11 22:31:06]  *** Listing of results directory ***
[2026-01-11 22:31:06] total 437908
[2026-01-11 22:31:06] -rw-r--r--. 1 boincer umatlas    579449 Jan 11 20:37 pilot3.tar.gz
[2026-01-11 22:31:06] -rwx------. 1 boincer umatlas     36322 Jan 11 21:01 runpilot2-wrapper.sh
[2026-01-11 22:31:06] -rw-r--r--. 1 boincer umatlas      5112 Jan 11 21:01 queuedata.json
[2026-01-11 22:31:06] -rw-r--r--. 1 boincer umatlas       100 Jan 11 21:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 22:31:06] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 11 21:02 run_atlas
[2026-01-11 22:31:06] -rw-r--r--. 1 boincer umatlas       105 Jan 11 21:02 job.xml
[2026-01-11 22:31:06] -rw-r--r--. 2 boincer umatlas 391872885 Jan 11 21:02 EVNT.47962006._000119.pool.root.1
[2026-01-11 22:31:06] -rw-r--r--. 2 boincer umatlas    592614 Jan 11 21:02 input.tar.gz
[2026-01-11 22:31:06] -rw-r--r--. 2 boincer umatlas     15847 Jan 11 21:02 start_atlas.sh
[2026-01-11 22:31:06] drwxrwx--x. 2 boincer umatlas      4096 Jan 11 21:02 shared
[2026-01-11 22:31:06] -rw-r--r--. 1 boincer umatlas         0 Jan 11 21:02 boinc_lockfile
[2026-01-11 22:31:06] -rw-r--r--. 1 boincer umatlas      2889 Jan 11 21:02 pandaJob.out
[2026-01-11 22:31:06] -rw-------. 1 boincer umatlas        57 Jan 11 21:02 setup.sh.local
[2026-01-11 22:31:06] -rw-------. 1 boincer umatlas    990074 Jan 11 21:03 agis_schedconf.cvmfs.json
[2026-01-11 22:31:06] -rw-------. 1 boincer umatlas   1516240 Jan 11 21:03 agis_ddmendpoints.agis.ALL.json
[2026-01-11 22:31:06] drwx------. 5 boincer umatlas      4096 Jan 11 21:03 pilot3
[2026-01-11 22:31:06] -rw-r--r--. 1 boincer umatlas       530 Jan 11 22:19 boinc_task_state.xml
[2026-01-11 22:31:06] -rw-r--r--. 1 boincer umatlas      6878 Jan 11 22:27 init_data.xml
[2026-01-11 22:31:06] -rw-------. 1 boincer umatlas  48592666 Jan 11 22:30 HITS.47962010._003164.pool.root.1
[2026-01-11 22:31:06] -rw-------. 1 boincer umatlas      1040 Jan 11 22:30 memory_monitor_summary.json
[2026-01-11 22:31:06] -rw-------. 1 boincer umatlas   1312138 Jan 11 22:30 log.47962010._003164.job.log.tgz.1
[2026-01-11 22:31:06] -rw-------. 1 boincer umatlas      8575 Jan 11 22:30 heartbeat.json
[2026-01-11 22:31:06] -rw-------. 1 boincer umatlas        95 Jan 11 22:31 pilot_heartbeat.json
[2026-01-11 22:31:06] -rw-r--r--. 1 boincer umatlas      8192 Jan 11 22:31 boinc_mmap_file
[2026-01-11 22:31:06] -rw-r--r--. 1 boincer umatlas        27 Jan 11 22:31 wrapper_checkpoint.txt
[2026-01-11 22:31:06] -rw-------. 1 boincer umatlas      4896 Jan 11 22:31 pilotlog.txt
[2026-01-11 22:31:06] -rw-------. 1 boincer umatlas    701068 Jan 11 22:31 log.47962010._003164.job.log.1
[2026-01-11 22:31:06] -rw-------. 1 boincer umatlas       353 Jan 11 22:31 output.list
[2026-01-11 22:31:06] -rw-r--r--. 1 boincer umatlas       620 Jan 11 22:31 runtime_log
[2026-01-11 22:31:06] -rw-------. 1 boincer umatlas   2037760 Jan 11 22:31 result.tar.gz
[2026-01-11 22:31:06] -rw-r--r--. 1 boincer umatlas      9352 Jan 11 22:31 runtime_log.err
[2026-01-11 22:31:06] -rw-------. 1 boincer umatlas       655 Jan 11 22:31 B9ANDmjQMz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmz4mKDmfLYrHo.diag
[2026-01-11 22:31:06] -rw-r--r--. 1 boincer umatlas     21798 Jan 11 22:31 stderr.txt
[2026-01-11 22:31:06] HITS file was successfully produced:
[2026-01-11 22:31:06] -rw-------. 1 boincer umatlas 48592666 Jan 11 22:30 shared/HITS.pool.root.1
[2026-01-11 22:31:06]  *** Contents of shared directory: ***
[2026-01-11 22:31:06] total 432736
[2026-01-11 22:31:06] -rw-r--r--. 2 boincer umatlas 391872885 Jan 11 21:02 ATLAS.root_0
[2026-01-11 22:31:06] -rw-r--r--. 2 boincer umatlas    592614 Jan 11 21:02 input.tar.gz
[2026-01-11 22:31:06] -rw-r--r--. 2 boincer umatlas     15847 Jan 11 21:02 start_atlas.sh
[2026-01-11 22:31:06] -rw-------. 1 boincer umatlas  48592666 Jan 11 22:30 HITS.pool.root.1
[2026-01-11 22:31:06] -rw-------. 1 boincer umatlas   2037760 Jan 11 22:31 result.tar.gz
22:31:08 (2929178): run_atlas exited; CPU time 17486.396291
22:31:08 (2929178): called boinc_finish(0)

</stderr_txt>
]]>

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