Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:51:53 (2161571): wrapper (7.7.26015): starting
18:51:53 (2161571): wrapper: running run_atlas (--nthreads 9)
[2026-01-11 18:51:53] Arguments: --nthreads 9
[2026-01-11 18:51:53] Threads: 9
[2026-01-11 18:51:53] Checking for CVMFS
[2026-01-11 18:51:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 18:51:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 18:51:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 18:51:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 18:51:53] 2.13.3.0 16090 96925 400868 155033 0 305 26903140 32935937 24944 16776704 0 1032925765 99.551 1190252952 52103 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-11 18:51:53] CVMFS is ok
[2026-01-11 18:51:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 18:51:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 18:51:53] Further information can be found at the LHC@home message board.
[2026-01-11 18:51:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 18:51:53] Checking for apptainer binary...
[2026-01-11 18:51:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 18:51:53] Running /usr/bin/apptainer --version
[2026-01-11 18:51:53] apptainer version 1.4.5-2.el9
[2026-01-11 18:51:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 18:51:53] c7-9-15.aglt2.org
[2026-01-11 18:51:53] apptainer works
[2026-01-11 18:51:53] Set ATHENA_PROC_NUMBER=9
[2026-01-11 18:51:53] Set ATHENA_CORE_NUMBER=9
[2026-01-11 18:51:53] Starting ATLAS job with PandaID=6966543355
[2026-01-11 18:51:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 20:05:17]  *** The last 200 lines of the pilot log: ***
[2026-01-11 20:05:17]  scope=mc23_13p6TeV
[2026-01-11 20:05:17]  status=None
[2026-01-11 20:05:17]  status_code=0
[2026-01-11 20:05:17]  storage_token=
[2026-01-11 20:05:17]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6966543355/log.47898826._040844.job.log.tgz.1
[2026-01-11 20:05:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bb/30/log.47898826._040844.job.log.tgz.1
[2026-01-11 20:05:17]  workdir=None
[2026-01-11 20:05:17] ]
[2026-01-11 20:05:17] 2026-01-12 01:04:26,970 | INFO     | transferring file log.47898826._040844.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6966543355/log.47898826._040844.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-11 20:05:17] 2026-01-12 01:04:26,971 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6966543355/log.47898826._040844.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._040844.job
[2026-01-11 20:05:17] 2026-01-12 01:04:26,990 | INFO     | adding to output.list: log.47898826._040844.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bb/30/log.47898826._040844.job.log.tg
[2026-01-11 20:05:17] 2026-01-12 01:04:26,991 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 20:05:17] 2026-01-12 01:04:26,991 | INFO     | summary of transferred files:
[2026-01-11 20:05:17] 2026-01-12 01:04:26,991 | INFO     |  -- lfn=log.47898826._040844.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 20:05:17] 2026-01-12 01:04:26,991 | INFO     | stage-out finished correctly
[2026-01-11 20:05:17] 2026-01-12 01:04:27,037 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 20:05:17] 2026-01-12 01:04:27,823 | INFO     | time since job start (4344s) is within the limit (349056.0s)
[2026-01-11 20:05:17] 2026-01-12 01:04:27,983 | INFO     | job 6966543355 has state=finished
[2026-01-11 20:05:17] 2026-01-12 01:04:27,984 | INFO     | preparing for final server update for job 6966543355 in state='finished'
[2026-01-11 20:05:17] 2026-01-12 01:04:27,984 | INFO     | this job has now completed (state=finished)
[2026-01-11 20:05:17] 2026-01-12 01:04:27,984 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 20:05:17] 2026-01-12 01:04:27,984 | INFO     | log transfer has been attempted: DONE
[2026-01-11 20:05:17] 2026-01-12 01:04:27,984 | INFO     | job 6966543355 has finished - writing final server update
[2026-01-11 20:05:17] 2026-01-12 01:04:27,984 | INFO     | total number of processed events: 400 (read)
[2026-01-11 20:05:17] 2026-01-12 01:04:27,987 | INFO     | executing command: lscpu
[2026-01-11 20:05:17] 2026-01-12 01:04:28,040 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 20:05:17] 2026-01-12 01:04:29,830 | INFO     | time since job start (4346s) is within the limit (349056.0s)
[2026-01-11 20:05:17] 2026-01-12 01:04:31,836 | INFO     | time since job start (4348s) is within the limit (349056.0s)
[2026-01-11 20:05:17] 2026-01-12 01:04:31,927 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-11 20:05:17] 2026-01-12 01:04:31,932 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.2562265624997
[2026-01-11 20:05:17] 2026-01-12 01:04:31,945 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6966543355/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 20:05:17] 2026-01-12 01:04:31,946 | INFO     | extracted standard info from prmon json
[2026-01-11 20:05:17] 2026-01-12 01:04:31,946 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 20:05:17] 2026-01-12 01:04:31,946 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 20:05:17] 2026-01-12 01:04:31,946 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 20:05:17] 2026-01-12 01:04:31,946 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 20:05:17] 2026-01-12 01:04:31,947 | INFO     | fitting pss+swap vs Time
[2026-01-11 20:05:17] 2026-01-12 01:04:31,948 | INFO     | sum of square deviations: 81266640.0
[2026-01-11 20:05:17] 2026-01-12 01:04:31,948 | INFO     | sum of deviations: -11172543206.0
[2026-01-11 20:05:17] 2026-01-12 01:04:31,948 | INFO     | mean x: 1768177774.5
[2026-01-11 20:05:17] 2026-01-12 01:04:31,948 | INFO     | mean y: 2760870.4375
[2026-01-11 20:05:17] 2026-01-12 01:04:31,948 | INFO     | intersect: 243091961820.42358
[2026-01-11 20:05:17] 2026-01-12 01:04:31,948 | INFO     | chi2: 0.10802009909354957
[2026-01-11 20:05:17] 2026-01-12 01:04:31,948 | INFO     | current memory leak: -137.48 B/s (using 64 data points, chi2=0.11)
[2026-01-11 20:05:17] 2026-01-12 01:04:31,948 | INFO     | could have reported an average CPU frequency of 3787 MHz (6 samples)
[2026-01-11 20:05:17] 2026-01-12 01:04:31,948 | INFO     | ..............................
[2026-01-11 20:05:17] 2026-01-12 01:04:31,948 | INFO     | . Timing measurements:
[2026-01-11 20:05:17] 2026-01-12 01:04:31,948 | INFO     | . get job = 0 s
[2026-01-11 20:05:17] 2026-01-12 01:04:31,949 | INFO     | . initial setup = 2 s
[2026-01-11 20:05:17] 2026-01-12 01:04:31,949 | INFO     | . payload setup = 5 s
[2026-01-11 20:05:17] 2026-01-12 01:04:31,949 | INFO     | . stage-in = 0 s
[2026-01-11 20:05:17] 2026-01-12 01:04:31,949 | INFO     | . payload execution = 4318 s
[2026-01-11 20:05:17] 2026-01-12 01:04:31,949 | INFO     | . stage-out = 0 s
[2026-01-11 20:05:17] 2026-01-12 01:04:31,949 | INFO     | . log creation = 0 s
[2026-01-11 20:05:17] 2026-01-12 01:04:31,949 | INFO     | ..............................
[2026-01-11 20:05:17] 2026-01-12 01:04:32,087 | INFO     | 
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | job summary report
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | --------------------------------------------------
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | PanDA job id: 6966543355
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | task id: 47898826
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | errors: (none)
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | pilot state: finished 
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | transexitcode: 0
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | exeerrorcode: 0
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | exeerrordiag: 
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | exitcode: 0
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | exitmsg: OK
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | cpuconsumptiontime: 32339 s
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | nevents: 400
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | neventsw: 0
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | pid: 2177469
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | pgrp: 2177469
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | corecount: 9
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | event service: False
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | sizes: {0: 2283912, 4: 2284174, 10: 2284202, 4327: 2310413, 4328: 2310412, 4329: 2319650, 4334: 2319788}
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | --------------------------------------------------
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | 
[2026-01-11 20:05:17] 2026-01-12 01:04:32,088 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-11 20:05:17] 2026-01-12 01:04:32,106 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,106 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,106 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,106 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,106 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,106 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,106 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,107 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,107 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,107 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,107 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,107 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,107 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,107 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,107 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,107 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,107 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,107 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 20:05:17] 2026-01-12 01:04:32,107 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,107 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 20:05:17] 2026-01-12 01:04:32,107 | INFO     | job 6966543355 has completed (purged errors)
[2026-01-11 20:05:17] 2026-01-12 01:04:32,107 | INFO     | overall cleanup function is called
[2026-01-11 20:05:17] 2026-01-12 01:04:32,481 | WARNING  | process 2177469 can no longer be monitored (due to stat problems) - aborting
[2026-01-11 20:05:17] 2026-01-12 01:04:32,740 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 20:05:17] 2026-01-12 01:04:32,740 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/0/PanDA_Pilot-6966543355/payload.stdout) since it has not been created yet
[2026-01-11 20:05:17] 2026-01-12 01:04:32,741 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-11 20:05:17] 2026-01-12 01:04:32,757 | INFO     | sufficient remaining disk space (76542902272 B)
[2026-01-11 20:05:17] 2026-01-12 01:04:32,757 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-11 20:05:17] 2026-01-12 01:04:32,758 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6966543355/HITS.47898826._040844.pool.root.1 since it does not exist
[2026-01-11 20:05:17] 2026-01-12 01:04:33,114 | INFO     | --- collectZombieJob: --- 10, [2177469]
[2026-01-11 20:05:17] 2026-01-12 01:04:33,115 | INFO     | zombie collector waiting for pid 2177469
[2026-01-11 20:05:17] 2026-01-12 01:04:33,115 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 20:05:17] 2026-01-12 01:04:33,115 | INFO     | collected zombie processes
[2026-01-11 20:05:17] 2026-01-12 01:04:33,115 | INFO     | will attempt to kill all subprocesses of pid=2177469
[2026-01-11 20:05:17] 2026-01-12 01:04:33,145 | INFO     | number of running child processes to parent process 2177469: 1
[2026-01-11 20:05:17] 2026-01-12 01:04:33,145 | INFO     | maximum number of monitored processes: 6
[2026-01-11 20:05:17] 2026-01-12 01:04:33,145 | INFO     | aborting job monitoring since job object (job id=6966543355) has expired
[2026-01-11 20:05:17] 2026-01-12 01:04:33,484 | INFO     | process IDs to be killed: [2177469] (in reverse order)
[2026-01-11 20:05:17] 2026-01-12 01:04:33,605 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 20:05:17] 2026-01-12 01:04:33,605 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 20:05:17] 2026-01-12 01:04:33,623 | INFO     | did not find any defunct processes belonging to 2177469
[2026-01-11 20:05:17] 2026-01-12 01:04:33,638 | INFO     | did not find any defunct processes belonging to 2177469
[2026-01-11 20:05:17] 2026-01-12 01:04:33,638 | INFO     | ready for new job
[2026-01-11 20:05:17] 2026-01-12 01:04:33,638 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 20:05:17] 2026-01-12 01:04:33,639 | INFO     | ***************************************
[2026-01-11 20:05:17] 2026-01-12 01:04:33,639 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 20:05:17] 2026-01-12 01:04:33,639 | INFO     | ***************************************
[2026-01-11 20:05:17] 2026-01-12 01:04:33,640 | INFO     | 
[2026-01-11 20:05:17] 2026-01-12 01:04:33,644 | INFO     | architecture information:
[2026-01-11 20:05:17] 2026-01-12 01:04:33,644 | INFO     | executing command: cat /etc/os-release
[2026-01-11 20:05:17] 2026-01-12 01:04:33,658 | INFO     | cat /etc/os-release:
[2026-01-11 20:05:17] NAME="CentOS Linux"
[2026-01-11 20:05:17] VERSION="7 (Core)"
[2026-01-11 20:05:17] ID="centos"
[2026-01-11 20:05:17] ID_LIKE="rhel fedora"
[2026-01-11 20:05:17] VERSION_ID="7"
[2026-01-11 20:05:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 20:05:17] ANSI_COLOR="0;31"
[2026-01-11 20:05:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 20:05:17] HOME_URL="https://www.centos.org/"
[2026-01-11 20:05:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 20:05:17] 
[2026-01-11 20:05:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 20:05:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 20:05:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 20:05:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 20:05:17] 
[2026-01-11 20:05:17] 2026-01-12 01:04:33,658 | INFO     | ***************************************
[2026-01-11 20:05:17] 2026-01-12 01:04:34,161 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-11 20:05:17] 2026-01-12 01:04:34,178 | INFO     | sufficient remaining disk space (76542902272 B)
[2026-01-11 20:05:17] 2026-01-12 01:04:34,178 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 20:05:17] 2026-01-12 01:04:34,178 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 20:05:17] 2026-01-12 01:04:34,178 | INFO     | update_server=False
[2026-01-11 20:05:17] 2026-01-12 01:04:34,178 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 20:05:17] 2026-01-12 01:04:34,178 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 20:05:17] 2026-01-12 01:04:34,179 | INFO     | aborting loop
[2026-01-11 20:05:17] 2026-01-12 01:04:34,398 | INFO     | all data control threads have been joined
[2026-01-11 20:05:17] 2026-01-12 01:04:34,771 | INFO     | all payload control threads have been joined
[2026-01-11 20:05:17] 2026-01-12 01:04:35,002 | INFO     | all job control threads have been joined
[2026-01-11 20:05:17] 2026-01-12 01:04:35,050 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 20:05:17] 2026-01-12 01:04:35,183 | INFO     | [job] retrieve thread has finished
[2026-01-11 20:05:17] 2026-01-12 01:04:35,184 | INFO     | [job] job monitor thread has finished
[2026-01-11 20:05:17] 2026-01-12 01:04:35,240 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 20:05:17] 2026-01-12 01:04:35,242 | INFO     | [job] validate thread has finished
[2026-01-11 20:05:17] 2026-01-12 01:04:35,404 | INFO     | [data] control thread has finished
[2026-01-11 20:05:17] 2026-01-12 01:04:35,412 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 20:05:17] 2026-01-12 01:04:35,448 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 20:05:17] 2026-01-12 01:04:35,511 | INFO     | [payload] failed_post thread has finished
[2026-01-11 20:05:17] 2026-01-12 01:04:35,777 | INFO     | [payload] control thread has finished
[2026-01-11 20:05:17] 2026-01-12 01:04:35,826 | INFO     | [data] copytool_in thread has finished
[2026-01-11 20:05:17] 2026-01-12 01:04:36,007 | INFO     | [job] control thread has finished
[2026-01-11 20:05:17] 2026-01-12 01:04:36,320 | INFO     | [payload] validate_post thread has finished
[2026-01-11 20:05:17] 2026-01-12 01:04:36,616 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 20:05:17] 2026-01-12 01:04:37,014 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 20:05:17] 2026-01-12 01:04:37,056 | INFO     | [data] copytool_out thread has finished
[2026-01-11 20:05:17] 2026-01-12 01:04:37,594 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 20:05:17] 2026-01-12 01:04:38,019 | INFO     | [job] queue monitor thread has finished
[2026-01-11 20:05:17] 2026-01-12 01:04:41,601 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 20:05:17] 2026-01-12 01:05:05,283 | INFO     | PID=2165274 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 20:05:17] 2026-01-12 01:05:05,283 | INFO     | .. there are 29 such processes running
[2026-01-11 20:05:17] 2026-01-12 01:05:05,283 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 20:05:17] 2026-01-12 01:05:05,283 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 20:05:17] 2026-01-12 01:05:05,283 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 20:05:17] 2026-01-12 01:05:10,255 | INFO     | [monitor] cgroup control has ended
[2026-01-11 20:05:17] 2026-01-12 01:05:12,124 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140099435816768)>', '<ExcThread(monitor, started 140098813294336)>']
[2026-01-11 20:05:17] 2026-01-12 01:05:12,313 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 20:05:17] 2026-01-12 01:05:12,314 | INFO     | [monitor] control thread has ended
[2026-01-11 20:05:17] 2026-01-12 01:05:17,149 | INFO     | all workflow threads have been joined
[2026-01-11 20:05:17] 2026-01-12 01:05:17,150 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 20:05:17] 2026-01-12 01:05:17,150 | INFO     | traces error code: 0
[2026-01-11 20:05:17] 2026-01-12 01:05:17,150 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 20:05:17] 2026-01-12 01:05:17,278 [wrapper] ==== pilot stdout END ====
[2026-01-11 20:05:17] 2026-01-12 01:05:17,281 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 20:05:17] 2026-01-12 01:05:17,283 [wrapper] pilotpid: 2165274
[2026-01-11 20:05:17] 2026-01-12 01:05:17,286 [wrapper] Pilot exit status: 0
[2026-01-11 20:05:17] 2026-01-12 01:05:17,296 [wrapper] pandaids: 6966543355
[2026-01-11 20:05:17] 2026-01-12 01:05:17,393 [wrapper] cleanup supervisor_pilot 2748722 2165275
[2026-01-11 20:05:17] 2026-01-12 01:05:17,396 [wrapper] Test setup, not cleaning
[2026-01-11 20:05:17] 2026-01-12 01:05:17,399 [wrapper] apfmon messages muted
[2026-01-11 20:05:17] 2026-01-12 01:05:17,402 [wrapper] ==== wrapper stdout END ====
[2026-01-11 20:05:17] 2026-01-12 01:05:17,404 [wrapper] ==== wrapper stderr END ====
[2026-01-11 20:05:17]  *** Error codes and diagnostics ***
[2026-01-11 20:05:17]     "exeErrorCode": 0,
[2026-01-11 20:05:17]     "exeErrorDiag": "",
[2026-01-11 20:05:17]     "pilotErrorCode": 0,
[2026-01-11 20:05:17]     "pilotErrorDiag": "",
[2026-01-11 20:05:17]  *** Listing of results directory ***
[2026-01-11 20:05:17] total 438376
[2026-01-11 20:05:17] -rw-r--r--. 1 boincer umatlas    579449 Jan 11 18:43 pilot3.tar.gz
[2026-01-11 20:05:17] -rwx------. 1 boincer umatlas     36322 Jan 11 18:50 runpilot2-wrapper.sh
[2026-01-11 20:05:17] -rw-r--r--. 1 boincer umatlas      5112 Jan 11 18:50 queuedata.json
[2026-01-11 20:05:17] -rw-r--r--. 1 boincer umatlas       100 Jan 11 18:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 20:05:17] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 11 18:51 run_atlas
[2026-01-11 20:05:17] -rw-r--r--. 1 boincer umatlas       105 Jan 11 18:51 job.xml
[2026-01-11 20:05:17] -rw-r--r--. 2 boincer umatlas 223815042 Jan 11 18:51 EVNT.47898824._000491.pool.root.1
[2026-01-11 20:05:17] -rw-r--r--. 2 boincer umatlas     15847 Jan 11 18:51 start_atlas.sh
[2026-01-11 20:05:17] drwxrwx--x. 2 boincer umatlas      4096 Jan 11 18:51 shared
[2026-01-11 20:05:17] -rw-r--r--. 2 boincer umatlas    592396 Jan 11 18:51 input.tar.gz
[2026-01-11 20:05:17] -rw-r--r--. 1 boincer umatlas         0 Jan 11 18:51 boinc_lockfile
[2026-01-11 20:05:17] -rw-r--r--. 1 boincer umatlas      2514 Jan 11 18:51 pandaJob.out
[2026-01-11 20:05:17] -rw-------. 1 boincer umatlas        57 Jan 11 18:51 setup.sh.local
[2026-01-11 20:05:17] -rw-------. 1 boincer umatlas    989946 Jan 11 18:52 agis_schedconf.cvmfs.json
[2026-01-11 20:05:17] -rw-------. 1 boincer umatlas   1516240 Jan 11 18:52 agis_ddmendpoints.agis.ALL.json
[2026-01-11 20:05:17] drwx------. 5 boincer umatlas      4096 Jan 11 18:52 pilot3
[2026-01-11 20:05:17] -rw-------. 1 boincer umatlas 219211614 Jan 11 20:04 HITS.47898826._040844.pool.root.1
[2026-01-11 20:05:17] -rw-r--r--. 1 boincer umatlas       529 Jan 11 20:04 boinc_task_state.xml
[2026-01-11 20:05:17] -rw-------. 1 boincer umatlas      1032 Jan 11 20:04 memory_monitor_summary.json
[2026-01-11 20:05:17] -rw-------. 1 boincer umatlas        95 Jan 11 20:04 pilot_heartbeat.json
[2026-01-11 20:05:17] -rw-r--r--. 1 boincer umatlas      7170 Jan 11 20:04 init_data.xml
[2026-01-11 20:05:17] -rw-------. 1 boincer umatlas    333557 Jan 11 20:04 log.47898826._040844.job.log.tgz.1
[2026-01-11 20:05:17] -rw-------. 1 boincer umatlas      7775 Jan 11 20:04 heartbeat.json
[2026-01-11 20:05:17] -rw-r--r--. 1 boincer umatlas      8192 Jan 11 20:05 boinc_mmap_file
[2026-01-11 20:05:17] -rw-r--r--. 1 boincer umatlas        27 Jan 11 20:05 wrapper_checkpoint.txt
[2026-01-11 20:05:17] -rw-------. 1 boincer umatlas      4824 Jan 11 20:05 pilotlog.txt
[2026-01-11 20:05:17] -rw-------. 1 boincer umatlas    644054 Jan 11 20:05 log.47898826._040844.job.log.1
[2026-01-11 20:05:17] -rw-------. 1 boincer umatlas       357 Jan 11 20:05 output.list
[2026-01-11 20:05:17] -rw-r--r--. 1 boincer umatlas       620 Jan 11 20:05 runtime_log
[2026-01-11 20:05:17] -rw-------. 1 boincer umatlas    993280 Jan 11 20:05 result.tar.gz
[2026-01-11 20:05:17] -rw-r--r--. 1 boincer umatlas      9337 Jan 11 20:05 runtime_log.err
[2026-01-11 20:05:17] -rw-------. 1 boincer umatlas       652 Jan 11 20:05 pkWMDm6NKz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDma4mKDmYyu2Vn.diag
[2026-01-11 20:05:17] -rw-r--r--. 1 boincer umatlas     22118 Jan 11 20:05 stderr.txt
[2026-01-11 20:05:17] HITS file was successfully produced:
[2026-01-11 20:05:17] -rw-------. 1 boincer umatlas 219211614 Jan 11 20:04 shared/HITS.pool.root.1
[2026-01-11 20:05:17]  *** Contents of shared directory: ***
[2026-01-11 20:05:17] total 434220
[2026-01-11 20:05:17] -rw-r--r--. 2 boincer umatlas 223815042 Jan 11 18:51 ATLAS.root_0
[2026-01-11 20:05:17] -rw-r--r--. 2 boincer umatlas     15847 Jan 11 18:51 start_atlas.sh
[2026-01-11 20:05:17] -rw-r--r--. 2 boincer umatlas    592396 Jan 11 18:51 input.tar.gz
[2026-01-11 20:05:17] -rw-------. 1 boincer umatlas 219211614 Jan 11 20:04 HITS.pool.root.1
[2026-01-11 20:05:17] -rw-------. 1 boincer umatlas    993280 Jan 11 20:05 result.tar.gz
20:05:19 (2161571): run_atlas exited; CPU time 32418.839819
20:05:19 (2161571): called boinc_finish(0)

</stderr_txt>
]]>

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