Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:20:57 (26370): wrapper (7.7.26015): starting
17:20:57 (26370): wrapper: running run_atlas (--nthreads 12)
[2026-01-11 17:20:57] Arguments: --nthreads 12
[2026-01-11 17:20:57] Threads: 12
[2026-01-11 17:20:57] Checking for CVMFS
[2026-01-11 17:20:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 17:20:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 17:20:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 17:20:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 17:20:58] 2.11.2.0 2933 354515 96808 155031 1 1 11934241 20275200 1 130560 2 149037428 99.944 21853610 17129 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-11 17:20:58] CVMFS is ok
[2026-01-11 17:20:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 17:20:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 17:20:58] Further information can be found at the LHC@home message board.
[2026-01-11 17:20:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 17:20:58] Checking for apptainer binary...
[2026-01-11 17:20:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 17:20:58] Running /usr/bin/apptainer --version
[2026-01-11 17:20:58] apptainer version 1.3.2-1.el7
[2026-01-11 17:20:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 17:20:59] c-205-15.aglt2.org
[2026-01-11 17:20:59] apptainer works
[2026-01-11 17:20:59] Set ATHENA_PROC_NUMBER=12
[2026-01-11 17:20:59] Set ATHENA_CORE_NUMBER=12
[2026-01-11 17:20:59] Starting ATLAS job with PandaID=6966508624
[2026-01-11 17:20:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 17:55:39]  *** The last 200 lines of the pilot log: ***
[2026-01-11 17:55:39]  protocol_id=None
[2026-01-11 17:55:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-11 17:55:39]  replicas=None
[2026-01-11 17:55:39]  scope=mc16_13TeV
[2026-01-11 17:55:39]  status=None
[2026-01-11 17:55:39]  status_code=0
[2026-01-11 17:55:39]  storage_token=
[2026-01-11 17:55:39]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6966508624/log.47962010._003103.job.log.tgz.1
[2026-01-11 17:55:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/9c/19/log.47962010._003103.job.log.tgz.1
[2026-01-11 17:55:39]  workdir=None
[2026-01-11 17:55:39] ]
[2026-01-11 17:55:39] 2026-01-11 22:54:59,131 | INFO     | transferring file log.47962010._003103.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6966508624/log.47962010._003103.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-11 17:55:39] 2026-01-11 22:54:59,131 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6966508624/log.47962010._003103.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._003103.job
[2026-01-11 17:55:39] 2026-01-11 22:54:59,144 | INFO     | monitor loop #158: job 0:6966508624 is in state 'stageout'
[2026-01-11 17:55:39] 2026-01-11 22:54:59,145 | WARNING  | aborting job monitor tasks since payload process 4219 is not running
[2026-01-11 17:55:39] 2026-01-11 22:54:59,154 | INFO     | adding to output.list: log.47962010._003103.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/9c/19/log.47962010._003103.job.log.tgz.
[2026-01-11 17:55:39] 2026-01-11 22:54:59,155 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 17:55:39] 2026-01-11 22:54:59,155 | INFO     | summary of transferred files:
[2026-01-11 17:55:39] 2026-01-11 22:54:59,156 | INFO     |  -- lfn=log.47962010._003103.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 17:55:39] 2026-01-11 22:54:59,156 | INFO     | stage-out finished correctly
[2026-01-11 17:55:39] 2026-01-11 22:54:59,336 | INFO     | PID=30107 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-11 17:55:39] 2026-01-11 22:55:00,336 | INFO     | time since job start (2025s) is within the limit (349056.0s)
[2026-01-11 17:55:39] 2026-01-11 22:55:01,017 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 17:55:39] 2026-01-11 22:55:01,648 | INFO     | monitor loop #159: job 0:6966508624 is in state 'finished'
[2026-01-11 17:55:39] 2026-01-11 22:55:01,648 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 17:55:39] 2026-01-11 22:55:02,113 | INFO     | job 6966508624 has state=finished
[2026-01-11 17:55:39] 2026-01-11 22:55:02,114 | INFO     | preparing for final server update for job 6966508624 in state='finished'
[2026-01-11 17:55:39] 2026-01-11 22:55:02,114 | INFO     | this job has now completed (state=finished)
[2026-01-11 17:55:39] 2026-01-11 22:55:02,114 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 17:55:39] 2026-01-11 22:55:02,115 | INFO     | log transfer has been attempted: DONE
[2026-01-11 17:55:39] 2026-01-11 22:55:02,115 | INFO     | job 6966508624 has finished - writing final server update
[2026-01-11 17:55:39] 2026-01-11 22:55:02,115 | INFO     | total number of processed events: 50 (read)
[2026-01-11 17:55:39] 2026-01-11 22:55:02,121 | INFO     | executing command: lscpu
[2026-01-11 17:55:39] 2026-01-11 22:55:02,146 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 17:55:39] 2026-01-11 22:55:02,339 | INFO     | time since job start (2027s) is within the limit (349056.0s)
[2026-01-11 17:55:39] 2026-01-11 22:55:04,151 | INFO     | monitor loop #160: job 0:6966508624 is in state 'finished'
[2026-01-11 17:55:39] 2026-01-11 22:55:04,151 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 17:55:39] 2026-01-11 22:55:04,345 | INFO     | time since job start (2029s) is within the limit (349056.0s)
[2026-01-11 17:55:39] 2026-01-11 22:55:06,351 | INFO     | time since job start (2031s) is within the limit (349056.0s)
[2026-01-11 17:55:39] 2026-01-11 22:55:06,654 | INFO     | monitor loop #161: job 0:6966508624 is in state 'finished'
[2026-01-11 17:55:39] 2026-01-11 22:55:06,654 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 17:55:39] 2026-01-11 22:55:06,956 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-11 17:55:39] 2026-01-11 22:55:06,959 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1751.25
[2026-01-11 17:55:39] 2026-01-11 22:55:06,962 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6966508624/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 17:55:39] 2026-01-11 22:55:06,963 | INFO     | extracted standard info from prmon json
[2026-01-11 17:55:39] 2026-01-11 22:55:06,963 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 17:55:39] 2026-01-11 22:55:06,963 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 17:55:39] 2026-01-11 22:55:06,965 | INFO     | fitting pss+swap vs Time
[2026-01-11 17:55:39] 2026-01-11 22:55:06,965 | INFO     | sum of square deviations: 5438552.65384615
[2026-01-11 17:55:39] 2026-01-11 22:55:06,965 | INFO     | sum of deviations: -1921567396.6923077
[2026-01-11 17:55:39] 2026-01-11 22:55:06,965 | INFO     | mean x: 1768171171.8846154
[2026-01-11 17:55:39] 2026-01-11 22:55:06,966 | INFO     | mean y: 2965781.769230769
[2026-01-11 17:55:39] 2026-01-11 22:55:06,966 | INFO     | intersect: 624739047588.7329
[2026-01-11 17:55:39] 2026-01-11 22:55:06,966 | INFO     | chi2: 0.3958372175798902
[2026-01-11 17:55:39] 2026-01-11 22:55:06,966 | INFO     | current memory leak: -353.32 B/s (using 26 data points, chi2=0.40)
[2026-01-11 17:55:39] 2026-01-11 22:55:06,966 | INFO     | could have reported an average CPU frequency of 1753 MHz (5 samples)
[2026-01-11 17:55:39] 2026-01-11 22:55:06,966 | INFO     | ..............................
[2026-01-11 17:55:39] 2026-01-11 22:55:06,966 | INFO     | . Timing measurements:
[2026-01-11 17:55:39] 2026-01-11 22:55:06,967 | INFO     | . get job = 0 s
[2026-01-11 17:55:39] 2026-01-11 22:55:06,967 | INFO     | . initial setup = 2 s
[2026-01-11 17:55:39] 2026-01-11 22:55:06,967 | INFO     | . payload setup = 8 s
[2026-01-11 17:55:39] 2026-01-11 22:55:06,967 | INFO     | . stage-in = 0 s
[2026-01-11 17:55:39] 2026-01-11 22:55:06,967 | INFO     | . payload execution = 1995 s
[2026-01-11 17:55:39] 2026-01-11 22:55:06,967 | INFO     | . stage-out = 0 s
[2026-01-11 17:55:39] 2026-01-11 22:55:06,967 | INFO     | . log creation = 0 s
[2026-01-11 17:55:39] 2026-01-11 22:55:06,967 | INFO     | ..............................
[2026-01-11 17:55:39] 2026-01-11 22:55:07,434 | INFO     | 
[2026-01-11 17:55:39] 2026-01-11 22:55:07,435 | INFO     | job summary report
[2026-01-11 17:55:39] 2026-01-11 22:55:07,435 | INFO     | --------------------------------------------------
[2026-01-11 17:55:39] 2026-01-11 22:55:07,435 | INFO     | PanDA job id: 6966508624
[2026-01-11 17:55:39] 2026-01-11 22:55:07,435 | INFO     | task id: 47962010
[2026-01-11 17:55:39] 2026-01-11 22:55:07,435 | INFO     | errors: (none)
[2026-01-11 17:55:39] 2026-01-11 22:55:07,435 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 17:55:39] 2026-01-11 22:55:07,436 | INFO     | pilot state: finished 
[2026-01-11 17:55:39] 2026-01-11 22:55:07,436 | INFO     | transexitcode: 0
[2026-01-11 17:55:39] 2026-01-11 22:55:07,436 | INFO     | exeerrorcode: 0
[2026-01-11 17:55:39] 2026-01-11 22:55:07,436 | INFO     | exeerrordiag: 
[2026-01-11 17:55:39] 2026-01-11 22:55:07,436 | INFO     | exitcode: 0
[2026-01-11 17:55:39] 2026-01-11 22:55:07,436 | INFO     | exitmsg: OK
[2026-01-11 17:55:39] 2026-01-11 22:55:07,437 | INFO     | cpuconsumptiontime: 17646 s
[2026-01-11 17:55:39] 2026-01-11 22:55:07,437 | INFO     | nevents: 50
[2026-01-11 17:55:39] 2026-01-11 22:55:07,437 | INFO     | neventsw: 0
[2026-01-11 17:55:39] 2026-01-11 22:55:07,437 | INFO     | pid: 4219
[2026-01-11 17:55:39] 2026-01-11 22:55:07,437 | INFO     | pgrp: 4219
[2026-01-11 17:55:39] 2026-01-11 22:55:07,437 | INFO     | corecount: 12
[2026-01-11 17:55:39] 2026-01-11 22:55:07,437 | INFO     | event service: False
[2026-01-11 17:55:39] 2026-01-11 22:55:07,438 | INFO     | sizes: {0: 2284344, 1: 2284543, 6: 2284805, 12: 2284833, 2007: 2310642, 2008: 2319819, 2010: 2319819, 2016: 2320097}
[2026-01-11 17:55:39] 2026-01-11 22:55:07,438 | INFO     | --------------------------------------------------
[2026-01-11 17:55:39] 2026-01-11 22:55:07,438 | INFO     | 
[2026-01-11 17:55:39] 2026-01-11 22:55:07,438 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-11 17:55:39] 2026-01-11 22:55:07,464 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,465 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,465 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,465 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,465 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,466 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,466 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,466 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,466 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,466 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,466 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,467 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,467 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,467 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,467 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,467 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,467 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,467 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 17:55:39] 2026-01-11 22:55:07,468 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,468 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 17:55:39] 2026-01-11 22:55:07,468 | INFO     | job 6966508624 has completed (purged errors)
[2026-01-11 17:55:39] 2026-01-11 22:55:07,468 | INFO     | overall cleanup function is called
[2026-01-11 17:55:39] 2026-01-11 22:55:08,484 | INFO     | --- collectZombieJob: --- 10, [4219]
[2026-01-11 17:55:39] 2026-01-11 22:55:08,484 | INFO     | zombie collector waiting for pid 4219
[2026-01-11 17:55:39] 2026-01-11 22:55:08,484 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 17:55:39] 2026-01-11 22:55:08,485 | INFO     | collected zombie processes
[2026-01-11 17:55:39] 2026-01-11 22:55:08,485 | INFO     | will attempt to kill all subprocesses of pid=4219
[2026-01-11 17:55:39] 2026-01-11 22:55:08,578 | INFO     | process IDs to be killed: [4219] (in reverse order)
[2026-01-11 17:55:39] 2026-01-11 22:55:08,629 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 17:55:39] 2026-01-11 22:55:08,629 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 17:55:39] 2026-01-11 22:55:08,633 | INFO     | did not find any defunct processes belonging to 4219
[2026-01-11 17:55:39] 2026-01-11 22:55:08,636 | INFO     | did not find any defunct processes belonging to 4219
[2026-01-11 17:55:39] 2026-01-11 22:55:08,636 | INFO     | ready for new job
[2026-01-11 17:55:39] 2026-01-11 22:55:08,636 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 17:55:39] 2026-01-11 22:55:08,637 | INFO     | ***************************************
[2026-01-11 17:55:39] 2026-01-11 22:55:08,637 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 17:55:39] 2026-01-11 22:55:08,637 | INFO     | ***************************************
[2026-01-11 17:55:39] 2026-01-11 22:55:08,637 | INFO     | 
[2026-01-11 17:55:39] 2026-01-11 22:55:08,638 | INFO     | architecture information:
[2026-01-11 17:55:39] 2026-01-11 22:55:08,639 | INFO     | executing command: cat /etc/os-release
[2026-01-11 17:55:39] 2026-01-11 22:55:08,653 | INFO     | cat /etc/os-release:
[2026-01-11 17:55:39] NAME="CentOS Linux"
[2026-01-11 17:55:39] VERSION="7 (Core)"
[2026-01-11 17:55:39] ID="centos"
[2026-01-11 17:55:39] ID_LIKE="rhel fedora"
[2026-01-11 17:55:39] VERSION_ID="7"
[2026-01-11 17:55:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 17:55:39] ANSI_COLOR="0;31"
[2026-01-11 17:55:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 17:55:39] HOME_URL="https://www.centos.org/"
[2026-01-11 17:55:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 17:55:39] 
[2026-01-11 17:55:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 17:55:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 17:55:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 17:55:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 17:55:39] 
[2026-01-11 17:55:39] 2026-01-11 22:55:08,653 | INFO     | ***************************************
[2026-01-11 17:55:39] 2026-01-11 22:55:09,156 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-11 17:55:39] 2026-01-11 22:55:09,173 | INFO     | sufficient remaining disk space (29147267072 B)
[2026-01-11 17:55:39] 2026-01-11 22:55:09,173 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 17:55:39] 2026-01-11 22:55:09,174 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 17:55:39] 2026-01-11 22:55:09,174 | INFO     | update_server=False
[2026-01-11 17:55:39] 2026-01-11 22:55:09,174 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 17:55:39] 2026-01-11 22:55:09,286 | INFO     | all data control threads have been joined
[2026-01-11 17:55:39] 2026-01-11 22:55:09,753 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 17:55:39] 2026-01-11 22:55:09,874 | INFO     | all job control threads have been joined
[2026-01-11 17:55:39] 2026-01-11 22:55:10,165 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 17:55:39] 2026-01-11 22:55:10,165 | INFO     | aborting loop
[2026-01-11 17:55:39] 2026-01-11 22:55:10,179 | INFO     | [job] retrieve thread has finished
[2026-01-11 17:55:39] 2026-01-11 22:55:10,292 | INFO     | [data] control thread has finished
[2026-01-11 17:55:39] 2026-01-11 22:55:10,327 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 17:55:39] 2026-01-11 22:55:10,471 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 17:55:39] 2026-01-11 22:55:10,474 | INFO     | all payload control threads have been joined
[2026-01-11 17:55:39] 2026-01-11 22:55:10,633 | INFO     | [payload] validate_post thread has finished
[2026-01-11 17:55:39] 2026-01-11 22:55:10,801 | INFO     | [data] copytool_in thread has finished
[2026-01-11 17:55:39] 2026-01-11 22:55:10,875 | INFO     | [job] control thread has finished
[2026-01-11 17:55:39] 2026-01-11 22:55:11,170 | INFO     | [job] job monitor thread has finished
[2026-01-11 17:55:39] 2026-01-11 22:55:11,347 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 17:55:39] 2026-01-11 22:55:11,424 | INFO     | [payload] failed_post thread has finished
[2026-01-11 17:55:39] 2026-01-11 22:55:11,479 | INFO     | [payload] control thread has finished
[2026-01-11 17:55:39] 2026-01-11 22:55:11,548 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 17:55:39] 2026-01-11 22:55:11,604 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 17:55:39] 2026-01-11 22:55:11,637 | INFO     | [job] validate thread has finished
[2026-01-11 17:55:39] 2026-01-11 22:55:11,758 | INFO     | [data] copytool_out thread has finished
[2026-01-11 17:55:39] 2026-01-11 22:55:12,058 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 17:55:39] 2026-01-11 22:55:13,063 | INFO     | [job] queue monitor thread has finished
[2026-01-11 17:55:39] 2026-01-11 22:55:15,610 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 17:55:39] 2026-01-11 22:55:17,477 | INFO     | [monitor] cgroup control has ended
[2026-01-11 17:55:39] 2026-01-11 22:55:18,731 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140506245273408)>', '<ExcThread(monitor, started 140505794983680)>']
[2026-01-11 17:55:39] 2026-01-11 22:55:23,757 | INFO     | all workflow threads have been joined
[2026-01-11 17:55:39] 2026-01-11 22:55:23,757 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 17:55:39] 2026-01-11 22:55:23,757 | INFO     | traces error code: 0
[2026-01-11 17:55:39] 2026-01-11 22:55:23,758 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 17:55:39] 2026-01-11 22:55:39,531 | INFO     | PID=30107 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-11 17:55:39] 2026-01-11 22:55:39,531 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 17:55:39] 2026-01-11 22:55:39,531 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 17:55:39] 2026-01-11 22:55:39,532 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 17:55:39] 2026-01-11 22:55:39,532 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 17:55:39] 2026-01-11 22:55:39,532 | INFO     | [monitor] control thread has ended
[2026-01-11 17:55:39] 2026-01-11 22:55:39,616 [wrapper] ==== pilot stdout END ====
[2026-01-11 17:55:39] 2026-01-11 22:55:39,620 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 17:55:39] 2026-01-11 22:55:39,624 [wrapper] pilotpid: 30107
[2026-01-11 17:55:39] 2026-01-11 22:55:39,628 [wrapper] Pilot exit status: 0
[2026-01-11 17:55:39] 2026-01-11 22:55:39,641 [wrapper] pandaids: 6966508624
[2026-01-11 17:55:39] 2026-01-11 22:55:39,680 [wrapper] cleanup supervisor_pilot 17898 30108
[2026-01-11 17:55:39] 2026-01-11 22:55:39,685 [wrapper] Test setup, not cleaning
[2026-01-11 17:55:39] 2026-01-11 22:55:39,689 [wrapper] apfmon messages muted
[2026-01-11 17:55:39] 2026-01-11 22:55:39,693 [wrapper] ==== wrapper stdout END ====
[2026-01-11 17:55:39] 2026-01-11 22:55:39,696 [wrapper] ==== wrapper stderr END ====
[2026-01-11 17:55:39]  *** Error codes and diagnostics ***
[2026-01-11 17:55:39]     "exeErrorCode": 0,
[2026-01-11 17:55:39]     "exeErrorDiag": "",
[2026-01-11 17:55:39]     "pilotErrorCode": 0,
[2026-01-11 17:55:39]     "pilotErrorDiag": "",
[2026-01-11 17:55:39]  *** Listing of results directory ***
[2026-01-11 17:55:39] total 437736
[2026-01-11 17:55:39] -rw-r--r-- 1 boincer umatlas      5112 Jan 11 17:16 queuedata.json
[2026-01-11 17:55:39] -rw-r--r-- 1 boincer umatlas    579449 Jan 11 17:16 pilot3.tar.gz
[2026-01-11 17:55:39] -rwx------ 1 boincer umatlas     36322 Jan 11 17:20 runpilot2-wrapper.sh
[2026-01-11 17:55:39] -rw-r--r-- 1 boincer umatlas       100 Jan 11 17:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 17:55:39] -rwxr-xr-x 1 boincer umatlas      7986 Jan 11 17:20 run_atlas
[2026-01-11 17:55:39] -rw-r--r-- 1 boincer umatlas       105 Jan 11 17:20 job.xml
[2026-01-11 17:55:39] -rw-r--r-- 2 boincer umatlas 393484406 Jan 11 17:20 EVNT.47962006._000060.pool.root.1
[2026-01-11 17:55:39] -rw-r--r-- 2 boincer umatlas     15847 Jan 11 17:20 start_atlas.sh
[2026-01-11 17:55:39] drwxrwx--x 2 boincer umatlas      4096 Jan 11 17:20 shared
[2026-01-11 17:55:39] -rw-r--r-- 2 boincer umatlas    592620 Jan 11 17:20 input.tar.gz
[2026-01-11 17:55:39] -rw-r--r-- 1 boincer umatlas         0 Jan 11 17:20 boinc_lockfile
[2026-01-11 17:55:39] -rw-r--r-- 1 boincer umatlas      2887 Jan 11 17:20 pandaJob.out
[2026-01-11 17:55:39] -rw------- 1 boincer umatlas        57 Jan 11 17:21 setup.sh.local
[2026-01-11 17:55:39] -rw------- 1 boincer umatlas    989946 Jan 11 17:21 agis_schedconf.cvmfs.json
[2026-01-11 17:55:39] -rw------- 1 boincer umatlas   1516240 Jan 11 17:21 agis_ddmendpoints.agis.ALL.json
[2026-01-11 17:55:39] drwx------ 5 boincer umatlas      4096 Jan 11 17:21 pilot3
[2026-01-11 17:55:39] -rw-r--r-- 1 boincer umatlas       529 Jan 11 17:47 boinc_task_state.xml
[2026-01-11 17:55:39] -rw-r--r-- 1 boincer umatlas      5952 Jan 11 17:48 init_data.xml
[2026-01-11 17:55:39] -rw------- 1 boincer umatlas  46990785 Jan 11 17:54 HITS.47962010._003103.pool.root.1
[2026-01-11 17:55:39] -rw------- 1 boincer umatlas      1048 Jan 11 17:54 memory_monitor_summary.json
[2026-01-11 17:55:39] -rw------- 1 boincer umatlas   1590546 Jan 11 17:54 log.47962010._003103.job.log.tgz.1
[2026-01-11 17:55:39] -rw------- 1 boincer umatlas      8601 Jan 11 17:55 heartbeat.json
[2026-01-11 17:55:39] -rw-r--r-- 1 boincer umatlas        27 Jan 11 17:55 wrapper_checkpoint.txt
[2026-01-11 17:55:39] -rw-r--r-- 1 boincer umatlas      8192 Jan 11 17:55 boinc_mmap_file
[2026-01-11 17:55:39] -rw------- 1 boincer umatlas        95 Jan 11 17:55 pilot_heartbeat.json
[2026-01-11 17:55:39] -rw------- 1 boincer umatlas       745 Jan 11 17:55 pilotlog.txt
[2026-01-11 17:55:39] -rw------- 1 boincer umatlas    334739 Jan 11 17:55 log.47962010._003103.job.log.1
[2026-01-11 17:55:39] -rw------- 1 boincer umatlas       353 Jan 11 17:55 output.list
[2026-01-11 17:55:39] -rw-r--r-- 1 boincer umatlas       620 Jan 11 17:55 runtime_log
[2026-01-11 17:55:39] -rw------- 1 boincer umatlas   1945600 Jan 11 17:55 result.tar.gz
[2026-01-11 17:55:39] -rw-r--r-- 1 boincer umatlas      9344 Jan 11 17:55 runtime_log.err
[2026-01-11 17:55:39] -rw------- 1 boincer umatlas       659 Jan 11 17:55 JumMDmSyIz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmu3mKDmOJqagn.diag
[2026-01-11 17:55:39] -rw-r--r-- 1 boincer umatlas     21999 Jan 11 17:55 stderr.txt
[2026-01-11 17:55:39] HITS file was successfully produced:
[2026-01-11 17:55:39] -rw------- 1 boincer umatlas 46990785 Jan 11 17:54 shared/HITS.pool.root.1
[2026-01-11 17:55:39]  *** Contents of shared directory: ***
[2026-01-11 17:55:39] total 432656
[2026-01-11 17:55:39] -rw-r--r-- 2 boincer umatlas 393484406 Jan 11 17:20 ATLAS.root_0
[2026-01-11 17:55:39] -rw-r--r-- 2 boincer umatlas     15847 Jan 11 17:20 start_atlas.sh
[2026-01-11 17:55:39] -rw-r--r-- 2 boincer umatlas    592620 Jan 11 17:20 input.tar.gz
[2026-01-11 17:55:39] -rw------- 1 boincer umatlas  46990785 Jan 11 17:54 HITS.pool.root.1
[2026-01-11 17:55:39] -rw------- 1 boincer umatlas   1945600 Jan 11 17:55 result.tar.gz
17:55:41 (26370): run_atlas exited; CPU time 17300.113958
17:55:41 (26370): called boinc_finish(0)

</stderr_txt>
]]>

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