Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:54:02 (31955): wrapper (7.7.26015): starting
16:54:02 (31955): wrapper: running run_atlas (--nthreads 8)
[2026-01-11 16:54:02] Arguments: --nthreads 8
[2026-01-11 16:54:02] Threads: 8
[2026-01-11 16:54:02] Checking for CVMFS
[2026-01-11 16:54:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 16:54:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 16:54:02] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 16:54:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 16:54:02] 2.11.2.0 3869 170199 136100 155029 3 9 12796024 18432001 36 130560 0 117764442 99.987 6077721 33135 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-11 16:54:02] CVMFS is ok
[2026-01-11 16:54:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 16:54:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 16:54:02] Further information can be found at the LHC@home message board.
[2026-01-11 16:54:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 16:54:02] Checking for apptainer binary...
[2026-01-11 16:54:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 16:54:02] Running /usr/bin/apptainer --version
[2026-01-11 16:54:02] apptainer version 1.3.2-1.el7
[2026-01-11 16:54:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 16:54:03] c-206-12.aglt2.org
[2026-01-11 16:54:03] apptainer works
[2026-01-11 16:54:03] Set ATHENA_PROC_NUMBER=8
[2026-01-11 16:54:03] Set ATHENA_CORE_NUMBER=8
[2026-01-11 16:54:03] Starting ATLAS job with PandaID=6963148294
[2026-01-11 16:54:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 20:40:46]  *** The last 200 lines of the pilot log: ***
[2026-01-11 20:40:46] 2026-01-12 01:40:10,141 | INFO     | executing command: lscpu
[2026-01-11 20:40:46] 2026-01-12 01:40:10,174 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 20:40:46] 2026-01-12 01:40:11,186 | INFO     | monitor loop #980: job 0:6963148294 is in state 'finished'
[2026-01-11 20:40:46] 2026-01-12 01:40:11,186 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 20:40:46] 2026-01-12 01:40:11,416 | INFO     | time since job start (13555s) is within the limit (349056.0s)
[2026-01-11 20:40:46] 2026-01-12 01:40:13,421 | INFO     | time since job start (13557s) is within the limit (349056.0s)
[2026-01-11 20:40:46] 2026-01-12 01:40:13,689 | INFO     | monitor loop #981: job 0:6963148294 is in state 'finished'
[2026-01-11 20:40:46] 2026-01-12 01:40:13,689 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 20:40:46] 2026-01-12 01:40:14,498 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-11 20:40:46] 2026-01-12 01:40:14,501 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2483.5
[2026-01-11 20:40:46] 2026-01-12 01:40:14,504 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963148294/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 20:40:46] 2026-01-12 01:40:14,505 | INFO     | extracted standard info from prmon json
[2026-01-11 20:40:46] 2026-01-12 01:40:14,505 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 20:40:46] 2026-01-12 01:40:14,505 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 20:40:46] 2026-01-12 01:40:14,505 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 20:40:46] 2026-01-12 01:40:14,505 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 20:40:46] 2026-01-12 01:40:14,509 | INFO     | fitting pss+swap vs Time
[2026-01-11 20:40:46] 2026-01-12 01:40:14,509 | INFO     | sum of square deviations: 3392567795.5
[2026-01-11 20:40:46] 2026-01-12 01:40:14,510 | INFO     | sum of deviations: 26333808884.999996
[2026-01-11 20:40:46] 2026-01-12 01:40:14,510 | INFO     | mean x: 1768175223.5
[2026-01-11 20:40:46] 2026-01-12 01:40:14,511 | INFO     | mean y: 2499083.009009009
[2026-01-11 20:40:46] 2026-01-12 01:40:14,511 | INFO     | intersect: -13722440613.878813
[2026-01-11 20:40:46] 2026-01-12 01:40:14,511 | INFO     | chi2: 1.2732831739787718
[2026-01-11 20:40:46] 2026-01-12 01:40:14,511 | INFO     | sum of square deviations: 3168461268.0
[2026-01-11 20:40:46] 2026-01-12 01:40:14,512 | INFO     | sum of deviations: 25557538379.0
[2026-01-11 20:40:46] 2026-01-12 01:40:14,513 | INFO     | mean x: 1768175071.0
[2026-01-11 20:40:46] 2026-01-12 01:40:14,513 | INFO     | mean y: 2498554.6866359445
[2026-01-11 20:40:46] 2026-01-12 01:40:14,513 | INFO     | intersect: -14260008831.55595
[2026-01-11 20:40:46] 2026-01-12 01:40:14,513 | INFO     | chi2: 1.2739042440799497
[2026-01-11 20:40:46] 2026-01-12 01:40:14,513 | INFO     | current chi2=1.2739042440799497 (change=-0.04877706026988705 %)
[2026-01-11 20:40:46] 2026-01-12 01:40:14,513 | INFO     | right removable region: 216
[2026-01-11 20:40:46] 2026-01-12 01:40:14,514 | INFO     | sum of square deviations: 3168461268.0
[2026-01-11 20:40:46] 2026-01-12 01:40:14,515 | INFO     | sum of deviations: -4278352608.0000005
[2026-01-11 20:40:46] 2026-01-12 01:40:14,515 | INFO     | mean x: 1768175376.0
[2026-01-11 20:40:46] 2026-01-12 01:40:14,515 | INFO     | mean y: 2519699.341013825
[2026-01-11 20:40:46] 2026-01-12 01:40:14,515 | INFO     | intersect: 2390075390.0836353
[2026-01-11 20:40:46] 2026-01-12 01:40:14,515 | INFO     | chi2: 0.025778309923154424
[2026-01-11 20:40:46] 2026-01-12 01:40:14,515 | INFO     | current chi2=0.025778309923154424 (change=97.97544564712955 %)
[2026-01-11 20:40:46] 2026-01-12 01:40:14,516 | INFO     | sum of square deviations: 2954447953.0
[2026-01-11 20:40:46] 2026-01-12 01:40:14,517 | INFO     | sum of deviations: -2435555662.0000014
[2026-01-11 20:40:46] 2026-01-12 01:40:14,517 | INFO     | mean x: 1768175528.5
[2026-01-11 20:40:46] 2026-01-12 01:40:14,517 | INFO     | mean y: 2518378.9811320757
[2026-01-11 20:40:46] 2026-01-12 01:40:14,517 | INFO     | intersect: 1460147685.1515563
[2026-01-11 20:40:46] 2026-01-12 01:40:14,517 | INFO     | chi2: 0.02350848551473693
[2026-01-11 20:40:46] 2026-01-12 01:40:14,518 | INFO     | current chi2=0.02350848551473693 (change=8.805171538335442 %)
[2026-01-11 20:40:46] 2026-01-12 01:40:14,518 | INFO     | left removable region: 20
[2026-01-11 20:40:46] 2026-01-12 01:40:14,518 | INFO     | sum of square deviations: 2334722845.0
[2026-01-11 20:40:46] 2026-01-12 01:40:14,519 | INFO     | sum of deviations: 3802175170.5000005
[2026-01-11 20:40:46] 2026-01-12 01:40:14,519 | INFO     | mean x: 1768175650.5
[2026-01-11 20:40:46] 2026-01-12 01:40:14,519 | INFO     | mean y: 2513085.2193877553
[2026-01-11 20:40:46] 2026-01-12 01:40:14,519 | INFO     | intersect: -2877020804.55749
[2026-01-11 20:40:46] 2026-01-12 01:40:14,520 | INFO     | chi2: 0.005789195690771876
[2026-01-11 20:40:46] 2026-01-12 01:40:14,520 | INFO     | current memory leak: 1.63 B/s (using 196 data points, chi2=0.01)
[2026-01-11 20:40:46] 2026-01-12 01:40:14,520 | INFO     | could have reported an average CPU frequency of 2375 MHz (11 samples)
[2026-01-11 20:40:46] 2026-01-12 01:40:14,520 | INFO     | ..............................
[2026-01-11 20:40:46] 2026-01-12 01:40:14,520 | INFO     | . Timing measurements:
[2026-01-11 20:40:46] 2026-01-12 01:40:14,520 | INFO     | . get job = 0 s
[2026-01-11 20:40:46] 2026-01-12 01:40:14,521 | INFO     | . initial setup = 2 s
[2026-01-11 20:40:46] 2026-01-12 01:40:14,521 | INFO     | . payload setup = 6 s
[2026-01-11 20:40:46] 2026-01-12 01:40:14,521 | INFO     | . stage-in = 0 s
[2026-01-11 20:40:46] 2026-01-12 01:40:14,521 | INFO     | . payload execution = 13525 s
[2026-01-11 20:40:46] 2026-01-12 01:40:14,521 | INFO     | . stage-out = 2 s
[2026-01-11 20:40:46] 2026-01-12 01:40:14,521 | INFO     | . log creation = 0 s
[2026-01-11 20:40:46] 2026-01-12 01:40:14,521 | INFO     | ..............................
[2026-01-11 20:40:46] 2026-01-12 01:40:14,605 | INFO     | 
[2026-01-11 20:40:46] 2026-01-12 01:40:14,605 | INFO     | job summary report
[2026-01-11 20:40:46] 2026-01-12 01:40:14,605 | INFO     | --------------------------------------------------
[2026-01-11 20:40:46] 2026-01-12 01:40:14,605 | INFO     | PanDA job id: 6963148294
[2026-01-11 20:40:46] 2026-01-12 01:40:14,606 | INFO     | task id: 47898826
[2026-01-11 20:40:46] 2026-01-12 01:40:14,606 | INFO     | errors: (none)
[2026-01-11 20:40:46] 2026-01-12 01:40:14,606 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 20:40:46] 2026-01-12 01:40:14,606 | INFO     | pilot state: finished 
[2026-01-11 20:40:46] 2026-01-12 01:40:14,606 | INFO     | transexitcode: 0
[2026-01-11 20:40:46] 2026-01-12 01:40:14,606 | INFO     | exeerrorcode: 0
[2026-01-11 20:40:46] 2026-01-12 01:40:14,606 | INFO     | exeerrordiag: 
[2026-01-11 20:40:46] 2026-01-12 01:40:14,606 | INFO     | exitcode: 0
[2026-01-11 20:40:46] 2026-01-12 01:40:14,606 | INFO     | exitmsg: OK
[2026-01-11 20:40:46] 2026-01-12 01:40:14,606 | INFO     | cpuconsumptiontime: 104093 s
[2026-01-11 20:40:46] 2026-01-12 01:40:14,607 | INFO     | nevents: 400
[2026-01-11 20:40:46] 2026-01-12 01:40:14,607 | INFO     | neventsw: 0
[2026-01-11 20:40:46] 2026-01-12 01:40:14,607 | INFO     | pid: 20806
[2026-01-11 20:40:46] 2026-01-12 01:40:14,607 | INFO     | pgrp: 20806
[2026-01-11 20:40:46] 2026-01-12 01:40:14,607 | INFO     | corecount: 8
[2026-01-11 20:40:46] 2026-01-12 01:40:14,607 | INFO     | event service: False
[2026-01-11 20:40:46] 2026-01-12 01:40:14,607 | INFO     | sizes: {0: 2283143, 1: 2283999, 6: 2284261, 12: 2284289, 13535: 2314578, 13538: 2323760, 13543: 2323898}
[2026-01-11 20:40:46] 2026-01-12 01:40:14,607 | INFO     | --------------------------------------------------
[2026-01-11 20:40:46] 2026-01-12 01:40:14,607 | INFO     | 
[2026-01-11 20:40:46] 2026-01-12 01:40:14,608 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-11 20:40:46] 2026-01-12 01:40:14,628 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,629 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,629 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,629 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,629 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,630 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,630 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,630 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,630 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,630 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,630 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,631 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,631 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,631 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,631 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,631 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,632 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,632 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 20:40:46] 2026-01-12 01:40:14,632 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,632 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 20:40:46] 2026-01-12 01:40:14,632 | INFO     | job 6963148294 has completed (purged errors)
[2026-01-11 20:40:46] 2026-01-12 01:40:14,633 | INFO     | overall cleanup function is called
[2026-01-11 20:40:46] 2026-01-12 01:40:15,641 | INFO     | --- collectZombieJob: --- 10, [20806]
[2026-01-11 20:40:46] 2026-01-12 01:40:15,641 | INFO     | zombie collector waiting for pid 20806
[2026-01-11 20:40:46] 2026-01-12 01:40:15,642 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 20:40:46] 2026-01-12 01:40:15,642 | INFO     | collected zombie processes
[2026-01-11 20:40:46] 2026-01-12 01:40:15,642 | INFO     | will attempt to kill all subprocesses of pid=20806
[2026-01-11 20:40:46] 2026-01-12 01:40:15,788 | INFO     | process IDs to be killed: [20806] (in reverse order)
[2026-01-11 20:40:46] 2026-01-12 01:40:15,830 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 20:40:46] 2026-01-12 01:40:15,830 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 20:40:46] 2026-01-12 01:40:15,834 | INFO     | did not find any defunct processes belonging to 20806
[2026-01-11 20:40:46] 2026-01-12 01:40:15,841 | INFO     | did not find any defunct processes belonging to 20806
[2026-01-11 20:40:46] 2026-01-12 01:40:15,841 | INFO     | ready for new job
[2026-01-11 20:40:46] 2026-01-12 01:40:15,842 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 20:40:46] 2026-01-12 01:40:15,844 | INFO     | ***************************************
[2026-01-11 20:40:46] 2026-01-12 01:40:15,844 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 20:40:46] 2026-01-12 01:40:15,844 | INFO     | ***************************************
[2026-01-11 20:40:46] 2026-01-12 01:40:15,844 | INFO     | 
[2026-01-11 20:40:46] 2026-01-12 01:40:15,845 | INFO     | architecture information:
[2026-01-11 20:40:46] 2026-01-12 01:40:15,846 | INFO     | executing command: cat /etc/os-release
[2026-01-11 20:40:46] 2026-01-12 01:40:15,857 | INFO     | cat /etc/os-release:
[2026-01-11 20:40:46] NAME="CentOS Linux"
[2026-01-11 20:40:46] VERSION="7 (Core)"
[2026-01-11 20:40:46] ID="centos"
[2026-01-11 20:40:46] ID_LIKE="rhel fedora"
[2026-01-11 20:40:46] VERSION_ID="7"
[2026-01-11 20:40:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 20:40:46] ANSI_COLOR="0;31"
[2026-01-11 20:40:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 20:40:46] HOME_URL="https://www.centos.org/"
[2026-01-11 20:40:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 20:40:46] 
[2026-01-11 20:40:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 20:40:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 20:40:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 20:40:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 20:40:46] 
[2026-01-11 20:40:46] 2026-01-12 01:40:15,857 | INFO     | ***************************************
[2026-01-11 20:40:46] 2026-01-12 01:40:16,360 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-11 20:40:46] 2026-01-12 01:40:16,373 | INFO     | sufficient remaining disk space (27912044544 B)
[2026-01-11 20:40:46] 2026-01-12 01:40:16,374 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 20:40:46] 2026-01-12 01:40:16,374 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 20:40:46] 2026-01-12 01:40:16,374 | INFO     | update_server=False
[2026-01-11 20:40:46] 2026-01-12 01:40:16,374 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 20:40:46] 2026-01-12 01:40:16,375 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 20:40:46] 2026-01-12 01:40:16,375 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 20:40:46] 2026-01-12 01:40:16,375 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 20:40:46] 2026-01-12 01:40:16,896 | INFO     | all payload control threads have been joined
[2026-01-11 20:40:46] 2026-01-12 01:40:17,015 | INFO     | all job control threads have been joined
[2026-01-11 20:40:46] 2026-01-12 01:40:17,198 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 20:40:46] 2026-01-12 01:40:17,198 | INFO     | aborting loop
[2026-01-11 20:40:46] 2026-01-12 01:40:17,369 | INFO     | all data control threads have been joined
[2026-01-11 20:40:46] 2026-01-12 01:40:17,381 | INFO     | [job] retrieve thread has finished
[2026-01-11 20:40:46] 2026-01-12 01:40:17,381 | INFO     | [job] queue monitor thread has finished
[2026-01-11 20:40:46] 2026-01-12 01:40:17,400 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 20:40:46] 2026-01-12 01:40:17,455 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 20:40:46] 2026-01-12 01:40:17,462 | INFO     | [job] validate thread has finished
[2026-01-11 20:40:46] 2026-01-12 01:40:17,866 | INFO     | [payload] validate_post thread has finished
[2026-01-11 20:40:46] 2026-01-12 01:40:17,902 | INFO     | [payload] control thread has finished
[2026-01-11 20:40:46] 2026-01-12 01:40:18,020 | INFO     | [job] control thread has finished
[2026-01-11 20:40:46] 2026-01-12 01:40:18,204 | INFO     | [job] job monitor thread has finished
[2026-01-11 20:40:46] 2026-01-12 01:40:18,205 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 20:40:46] 2026-01-12 01:40:18,372 | INFO     | [data] control thread has finished
[2026-01-11 20:40:46] 2026-01-12 01:40:18,379 | INFO     | [data] copytool_out thread has finished
[2026-01-11 20:40:46] 2026-01-12 01:40:18,506 | INFO     | [data] copytool_in thread has finished
[2026-01-11 20:40:46] 2026-01-12 01:40:18,562 | INFO     | [payload] failed_post thread has finished
[2026-01-11 20:40:46] 2026-01-12 01:40:18,756 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 20:40:46] 2026-01-12 01:40:20,380 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 20:40:46] 2026-01-12 01:40:37,544 | INFO     | [monitor] cgroup control has ended
[2026-01-11 20:40:46] 2026-01-12 01:40:39,136 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140484131563328)>', '<ExcThread(monitor, started 140483456124672)>']
[2026-01-11 20:40:46] 2026-01-12 01:40:44,161 | INFO     | all workflow threads have been joined
[2026-01-11 20:40:46] 2026-01-12 01:40:44,162 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 20:40:46] 2026-01-12 01:40:44,162 | INFO     | traces error code: 0
[2026-01-11 20:40:46] 2026-01-12 01:40:44,163 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 20:40:46] 2026-01-12 01:40:46,632 | INFO     | PID=5796 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-11 20:40:46] 2026-01-12 01:40:46,633 | INFO     | .. there are 3 such processes running
[2026-01-11 20:40:46] 2026-01-12 01:40:46,634 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 20:40:46] 2026-01-12 01:40:46,634 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 20:40:46] 2026-01-12 01:40:46,634 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 20:40:46] 2026-01-12 01:40:46,634 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 20:40:46] 2026-01-12 01:40:46,634 | CRITICAL | thread 'MainThread' is not alive
[2026-01-11 20:40:46] 2026-01-12 01:40:46,635 | INFO     | [monitor] control thread has ended
[2026-01-11 20:40:46] 2026-01-12 01:40:46,736 [wrapper] ==== pilot stdout END ====
[2026-01-11 20:40:46] 2026-01-12 01:40:46,738 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 20:40:46] 2026-01-12 01:40:46,741 [wrapper] pilotpid: 5796
[2026-01-11 20:40:46] 2026-01-12 01:40:46,743 [wrapper] Pilot exit status: 0
[2026-01-11 20:40:46] 2026-01-12 01:40:46,753 [wrapper] pandaids: 6963148294
[2026-01-11 20:40:46] 2026-01-12 01:40:46,791 [wrapper] cleanup supervisor_pilot 20029 5797
[2026-01-11 20:40:46] 2026-01-12 01:40:46,794 [wrapper] Test setup, not cleaning
[2026-01-11 20:40:46] 2026-01-12 01:40:46,797 [wrapper] apfmon messages muted
[2026-01-11 20:40:46] 2026-01-12 01:40:46,799 [wrapper] ==== wrapper stdout END ====
[2026-01-11 20:40:46] 2026-01-12 01:40:46,802 [wrapper] ==== wrapper stderr END ====
[2026-01-11 20:40:46]  *** Error codes and diagnostics ***
[2026-01-11 20:40:46]     "exeErrorCode": 0,
[2026-01-11 20:40:46]     "exeErrorDiag": "",
[2026-01-11 20:40:46]     "pilotErrorCode": 0,
[2026-01-11 20:40:46]     "pilotErrorDiag": "",
[2026-01-11 20:40:46]  *** Listing of results directory ***
[2026-01-11 20:40:46] total 442480
[2026-01-11 20:40:46] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-11 20:40:46] -rwx------ 1 boincer umatlas     36322 Jan  8 11:05 runpilot2-wrapper.sh
[2026-01-11 20:40:46] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 11:07 queuedata.json
[2026-01-11 20:40:46] -rw-r--r-- 1 boincer umatlas       100 Jan 11 16:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 20:40:46] -rwxr-xr-x 1 boincer umatlas      7986 Jan 11 16:54 run_atlas
[2026-01-11 20:40:46] -rw-r--r-- 1 boincer umatlas       105 Jan 11 16:54 job.xml
[2026-01-11 20:40:46] -rw-r--r-- 2 boincer umatlas 224569466 Jan 11 16:54 EVNT.47898824._001103.pool.root.1
[2026-01-11 20:40:46] -rw-r--r-- 2 boincer umatlas     15847 Jan 11 16:54 start_atlas.sh
[2026-01-11 20:40:46] drwxrwx--x 2 boincer umatlas      4096 Jan 11 16:54 shared
[2026-01-11 20:40:46] -rw-r--r-- 2 boincer umatlas    592402 Jan 11 16:54 input.tar.gz
[2026-01-11 20:40:46] -rw-r--r-- 1 boincer umatlas         0 Jan 11 16:54 boinc_lockfile
[2026-01-11 20:40:46] -rw-r--r-- 1 boincer umatlas      2520 Jan 11 16:54 pandaJob.out
[2026-01-11 20:40:46] -rw------- 1 boincer umatlas        57 Jan 11 16:54 setup.sh.local
[2026-01-11 20:40:46] -rw------- 1 boincer umatlas    989954 Jan 11 16:54 agis_schedconf.cvmfs.json
[2026-01-11 20:40:46] drwx------ 5 boincer umatlas      4096 Jan 11 16:54 pilot3
[2026-01-11 20:40:46] -rw-r--r-- 1 boincer umatlas      5953 Jan 11 20:39 init_data.xml
[2026-01-11 20:40:46] -rw------- 1 boincer umatlas 219921054 Jan 11 20:39 HITS.47898826._027965.pool.root.1
[2026-01-11 20:40:46] -rw-r--r-- 1 boincer umatlas       531 Jan 11 20:39 boinc_task_state.xml
[2026-01-11 20:40:46] -rw------- 1 boincer umatlas      1060 Jan 11 20:40 memory_monitor_summary.json
[2026-01-11 20:40:46] -rw------- 1 boincer umatlas   1516240 Jan 11 20:40 agis_ddmendpoints.agis.ALL.json
[2026-01-11 20:40:46] -rw------- 1 boincer umatlas    460196 Jan 11 20:40 log.47898826._027965.job.log.tgz.1
[2026-01-11 20:40:46] -rw------- 1 boincer umatlas      7853 Jan 11 20:40 heartbeat.json
[2026-01-11 20:40:46] -rw-r--r-- 1 boincer umatlas      8192 Jan 11 20:40 boinc_mmap_file
[2026-01-11 20:40:46] -rw-r--r-- 1 boincer umatlas        29 Jan 11 20:40 wrapper_checkpoint.txt
[2026-01-11 20:40:46] -rw------- 1 boincer umatlas        95 Jan 11 20:40 pilot_heartbeat.json
[2026-01-11 20:40:46] -rw------- 1 boincer umatlas       889 Jan 11 20:40 pilotlog.txt
[2026-01-11 20:40:46] -rw------- 1 boincer umatlas   1890677 Jan 11 20:40 log.47898826._027965.job.log.1
[2026-01-11 20:40:46] -rw------- 1 boincer umatlas       357 Jan 11 20:40 output.list
[2026-01-11 20:40:46] -rw-r--r-- 1 boincer umatlas       620 Jan 11 20:40 runtime_log
[2026-01-11 20:40:46] -rw------- 1 boincer umatlas   2365440 Jan 11 20:40 result.tar.gz
[2026-01-11 20:40:46] -rw-r--r-- 1 boincer umatlas      9343 Jan 11 20:40 runtime_log.err
[2026-01-11 20:40:46] -rw------- 1 boincer umatlas       663 Jan 11 20:40 2YbNDmDh7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm70kKDm7jDHOn.diag
[2026-01-11 20:40:46] -rw-r--r-- 1 boincer umatlas     21322 Jan 11 20:40 stderr.txt
[2026-01-11 20:40:46] HITS file was successfully produced:
[2026-01-11 20:40:46] -rw------- 1 boincer umatlas 219921054 Jan 11 20:39 shared/HITS.pool.root.1
[2026-01-11 20:40:46]  *** Contents of shared directory: ***
[2026-01-11 20:40:46] total 436988
[2026-01-11 20:40:46] -rw-r--r-- 2 boincer umatlas 224569466 Jan 11 16:54 ATLAS.root_0
[2026-01-11 20:40:46] -rw-r--r-- 2 boincer umatlas     15847 Jan 11 16:54 start_atlas.sh
[2026-01-11 20:40:46] -rw-r--r-- 2 boincer umatlas    592402 Jan 11 16:54 input.tar.gz
[2026-01-11 20:40:46] -rw------- 1 boincer umatlas 219921054 Jan 11 20:39 HITS.pool.root.1
[2026-01-11 20:40:46] -rw------- 1 boincer umatlas   2365440 Jan 11 20:40 result.tar.gz
20:40:48 (31955): run_atlas exited; CPU time 104351.563016
20:40:48 (31955): called boinc_finish(0)

</stderr_txt>
]]>

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