Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:46:37 (870926): wrapper (7.7.26015): starting
14:46:37 (870926): wrapper: running run_atlas (--nthreads 9)
[2026-01-11 14:46:37] Arguments: --nthreads 9
[2026-01-11 14:46:37] Threads: 9
[2026-01-11 14:46:37] Checking for CVMFS
[2026-01-11 14:46:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 14:46:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 14:46:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 14:46:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 14:46:37] 2.13.3.0 12763 96682 153748 155027 0 124 25387370 40960000 15699 16776704 0 545346177 99.685 444313063 7385 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-11 14:46:37] CVMFS is ok
[2026-01-11 14:46:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 14:46:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 14:46:37] Further information can be found at the LHC@home message board.
[2026-01-11 14:46:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 14:46:37] Checking for apptainer binary...
[2026-01-11 14:46:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 14:46:37] Running /usr/bin/apptainer --version
[2026-01-11 14:46:37] apptainer version 1.4.5-2.el9
[2026-01-11 14:46:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 14:46:37] c7-2-17.aglt2.org
[2026-01-11 14:46:37] apptainer works
[2026-01-11 14:46:37] Set ATHENA_PROC_NUMBER=9
[2026-01-11 14:46:37] Set ATHENA_CORE_NUMBER=9
[2026-01-11 14:46:37] Starting ATLAS job with PandaID=6966428582
[2026-01-11 14:46:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 16:18:18]  *** The last 200 lines of the pilot log: ***
[2026-01-11 16:18:18] 2026-01-11 21:17:24,332 | INFO     | maximum number of monitored processes: 15
[2026-01-11 16:18:18] 2026-01-11 21:17:24,559 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 16:18:18] 2026-01-11 21:17:25,696 | INFO     | time since job start (5436s) is within the limit (349056.0s)
[2026-01-11 16:18:18] 2026-01-11 21:17:26,835 | INFO     | monitor loop #352: job 0:6966428582 is in state 'finished'
[2026-01-11 16:18:18] 2026-01-11 21:17:26,835 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 16:18:18] 2026-01-11 21:17:27,068 | INFO     | job 6966428582 has state=finished
[2026-01-11 16:18:18] 2026-01-11 21:17:27,068 | INFO     | preparing for final server update for job 6966428582 in state='finished'
[2026-01-11 16:18:18] 2026-01-11 21:17:27,241 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-11 16:18:18] 2026-01-11 21:17:27,241 | INFO     | this job has now completed (state=finished)
[2026-01-11 16:18:18] 2026-01-11 21:17:27,241 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 16:18:18] 2026-01-11 21:17:27,241 | INFO     | log transfer has been attempted: DONE
[2026-01-11 16:18:18] 2026-01-11 21:17:27,241 | INFO     | job 6966428582 has finished - writing final server update
[2026-01-11 16:18:18] 2026-01-11 21:17:27,242 | INFO     | total number of processed events: 50 (read)
[2026-01-11 16:18:18] 2026-01-11 21:17:27,259 | INFO     | executing command: lscpu
[2026-01-11 16:18:18] 2026-01-11 21:17:27,524 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 16:18:18] 2026-01-11 21:17:27,703 | INFO     | time since job start (5438s) is within the limit (349056.0s)
[2026-01-11 16:18:18] 2026-01-11 21:17:29,340 | INFO     | monitor loop #353: job 0:6966428582 is in state 'finished'
[2026-01-11 16:18:18] 2026-01-11 21:17:29,340 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 16:18:18] 2026-01-11 21:17:29,710 | INFO     | time since job start (5440s) is within the limit (349056.0s)
[2026-01-11 16:18:18] 2026-01-11 21:17:31,723 | INFO     | time since job start (5442s) is within the limit (349056.0s)
[2026-01-11 16:18:18] 2026-01-11 21:17:31,864 | INFO     | monitor loop #354: job 0:6966428582 is in state 'finished'
[2026-01-11 16:18:18] 2026-01-11 21:17:31,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 16:18:18] 2026-01-11 21:17:33,730 | INFO     | time since job start (5444s) is within the limit (349056.0s)
[2026-01-11 16:18:18] 2026-01-11 21:17:34,370 | INFO     | monitor loop #355: job 0:6966428582 is in state 'finished'
[2026-01-11 16:18:18] 2026-01-11 21:17:34,374 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 16:18:18] 2026-01-11 21:17:35,740 | INFO     | time since job start (5446s) is within the limit (349056.0s)
[2026-01-11 16:18:18] 2026-01-11 21:17:36,895 | INFO     | monitor loop #356: job 0:6966428582 is in state 'finished'
[2026-01-11 16:18:18] 2026-01-11 21:17:36,895 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 16:18:18] 2026-01-11 21:17:37,749 | INFO     | time since job start (5448s) is within the limit (349056.0s)
[2026-01-11 16:18:18] 2026-01-11 21:17:39,400 | INFO     | monitor loop #357: job 0:6966428582 is in state 'finished'
[2026-01-11 16:18:18] 2026-01-11 21:17:39,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 16:18:18] 2026-01-11 21:17:39,762 | INFO     | time since job start (5450s) is within the limit (349056.0s)
[2026-01-11 16:18:18] 2026-01-11 21:17:41,770 | INFO     | time since job start (5452s) is within the limit (349056.0s)
[2026-01-11 16:18:18] 2026-01-11 21:17:41,905 | INFO     | monitor loop #358: job 0:6966428582 is in state 'finished'
[2026-01-11 16:18:18] 2026-01-11 21:17:41,905 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 16:18:18] 2026-01-11 21:17:43,659 | INFO     | PID=874594 has CPU usage=10.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 16:18:18] 2026-01-11 21:17:43,659 | INFO     | .. there are 15 such processes running
[2026-01-11 16:18:18] 2026-01-11 21:17:44,442 | INFO     | monitor loop #359: job 0:6966428582 is in state 'finished'
[2026-01-11 16:18:18] 2026-01-11 21:17:44,442 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 16:18:18] 2026-01-11 21:17:44,484 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 16:18:18] 2026-01-11 21:17:44,539 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3254.458458333333
[2026-01-11 16:18:18] 2026-01-11 21:17:44,582 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6966428582/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 16:18:18] 2026-01-11 21:17:44,583 | INFO     | extracted standard info from prmon json
[2026-01-11 16:18:18] 2026-01-11 21:17:44,583 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 16:18:18] 2026-01-11 21:17:44,583 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 16:18:18] 2026-01-11 21:17:44,585 | INFO     | fitting pss+swap vs Time
[2026-01-11 16:18:18] 2026-01-11 21:17:44,585 | INFO     | sum of square deviations: 170805557.1219512
[2026-01-11 16:18:18] 2026-01-11 21:17:44,585 | INFO     | sum of deviations: -61076649278.2195
[2026-01-11 16:18:18] 2026-01-11 21:17:44,585 | INFO     | mean x: 1768163613.7560976
[2026-01-11 16:18:18] 2026-01-11 21:17:44,585 | INFO     | mean y: 2450155.43902439
[2026-01-11 16:18:18] 2026-01-11 21:17:44,586 | INFO     | intersect: 632262376141.2515
[2026-01-11 16:18:18] 2026-01-11 21:17:44,586 | INFO     | chi2: 3.830397122404462
[2026-01-11 16:18:18] 2026-01-11 21:17:44,586 | INFO     | current memory leak: -357.58 B/s (using 82 data points, chi2=3.83)
[2026-01-11 16:18:18] 2026-01-11 21:17:44,586 | INFO     | could have reported an average CPU frequency of 3227 MHz (6 samples)
[2026-01-11 16:18:18] 2026-01-11 21:17:44,586 | INFO     | ..............................
[2026-01-11 16:18:18] 2026-01-11 21:17:44,586 | INFO     | . Timing measurements:
[2026-01-11 16:18:18] 2026-01-11 21:17:44,586 | INFO     | . get job = 0 s
[2026-01-11 16:18:18] 2026-01-11 21:17:44,586 | INFO     | . initial setup = 2 s
[2026-01-11 16:18:18] 2026-01-11 21:17:44,587 | INFO     | . payload setup = 6 s
[2026-01-11 16:18:18] 2026-01-11 21:17:44,587 | INFO     | . stage-in = 0 s
[2026-01-11 16:18:18] 2026-01-11 21:17:44,587 | INFO     | . payload execution = 5407 s
[2026-01-11 16:18:18] 2026-01-11 21:17:44,587 | INFO     | . stage-out = 1 s
[2026-01-11 16:18:18] 2026-01-11 21:17:44,587 | INFO     | . log creation = 0 s
[2026-01-11 16:18:18] 2026-01-11 21:17:44,587 | INFO     | ..............................
[2026-01-11 16:18:18] 2026-01-11 21:17:44,665 | INFO     | 
[2026-01-11 16:18:18] 2026-01-11 21:17:44,666 | INFO     | job summary report
[2026-01-11 16:18:18] 2026-01-11 21:17:44,666 | INFO     | --------------------------------------------------
[2026-01-11 16:18:18] 2026-01-11 21:17:44,666 | INFO     | PanDA job id: 6966428582
[2026-01-11 16:18:18] 2026-01-11 21:17:44,666 | INFO     | task id: 47962010
[2026-01-11 16:18:18] 2026-01-11 21:17:44,667 | INFO     | errors: (none)
[2026-01-11 16:18:18] 2026-01-11 21:17:44,706 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 16:18:18] 2026-01-11 21:17:44,706 | INFO     | pilot state: finished 
[2026-01-11 16:18:18] 2026-01-11 21:17:44,706 | INFO     | transexitcode: 0
[2026-01-11 16:18:18] 2026-01-11 21:17:44,707 | INFO     | exeerrorcode: 0
[2026-01-11 16:18:18] 2026-01-11 21:17:44,707 | INFO     | exeerrordiag: 
[2026-01-11 16:18:18] 2026-01-11 21:17:44,707 | INFO     | exitcode: 0
[2026-01-11 16:18:18] 2026-01-11 21:17:44,707 | INFO     | exitmsg: OK
[2026-01-11 16:18:18] 2026-01-11 21:17:44,707 | INFO     | cpuconsumptiontime: 12665 s
[2026-01-11 16:18:18] 2026-01-11 21:17:44,707 | INFO     | nevents: 50
[2026-01-11 16:18:18] 2026-01-11 21:17:44,707 | INFO     | neventsw: 0
[2026-01-11 16:18:18] 2026-01-11 21:17:44,707 | INFO     | pid: 881591
[2026-01-11 16:18:18] 2026-01-11 21:17:44,707 | INFO     | pgrp: 881591
[2026-01-11 16:18:18] 2026-01-11 21:17:44,707 | INFO     | corecount: 9
[2026-01-11 16:18:18] 2026-01-11 21:17:44,707 | INFO     | event service: False
[2026-01-11 16:18:18] 2026-01-11 21:17:44,707 | INFO     | sizes: {0: 2283739, 1: 2284595, 5: 2284857, 12: 2284913, 5417: 2312199, 5419: 2321193, 5420: 2321377, 5440: 2321623}
[2026-01-11 16:18:18] 2026-01-11 21:17:44,707 | INFO     | --------------------------------------------------
[2026-01-11 16:18:18] 2026-01-11 21:17:44,707 | INFO     | 
[2026-01-11 16:18:18] 2026-01-11 21:17:44,707 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-11 16:18:18] 2026-01-11 21:17:44,758 | INFO     | time since job start (5455s) is within the limit (349056.0s)
[2026-01-11 16:18:18] 2026-01-11 21:17:44,787 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,787 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,787 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,787 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,788 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,788 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,788 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,788 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,788 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,788 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,788 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,788 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,788 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,788 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,788 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,788 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,789 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,789 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 16:18:18] 2026-01-11 21:17:44,789 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,789 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 16:18:18] 2026-01-11 21:17:44,789 | INFO     | job 6966428582 has completed (purged errors)
[2026-01-11 16:18:18] 2026-01-11 21:17:44,789 | INFO     | overall cleanup function is called
[2026-01-11 16:18:18] 2026-01-11 21:17:45,805 | INFO     | --- collectZombieJob: --- 10, [881591]
[2026-01-11 16:18:18] 2026-01-11 21:17:45,805 | INFO     | zombie collector waiting for pid 881591
[2026-01-11 16:18:18] 2026-01-11 21:17:45,805 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 16:18:18] 2026-01-11 21:17:45,806 | INFO     | collected zombie processes
[2026-01-11 16:18:18] 2026-01-11 21:17:45,806 | INFO     | will attempt to kill all subprocesses of pid=881591
[2026-01-11 16:18:18] 2026-01-11 21:17:46,689 | INFO     | process IDs to be killed: [881591] (in reverse order)
[2026-01-11 16:18:18] 2026-01-11 21:17:46,971 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 16:18:18] 2026-01-11 21:17:46,971 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 16:18:18] 2026-01-11 21:17:47,004 | INFO     | did not find any defunct processes belonging to 881591
[2026-01-11 16:18:18] 2026-01-11 21:17:47,041 | INFO     | did not find any defunct processes belonging to 881591
[2026-01-11 16:18:18] 2026-01-11 21:17:47,041 | INFO     | ready for new job
[2026-01-11 16:18:18] 2026-01-11 21:17:47,041 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 16:18:18] 2026-01-11 21:17:47,043 | INFO     | ***************************************
[2026-01-11 16:18:18] 2026-01-11 21:17:47,043 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 16:18:18] 2026-01-11 21:17:47,043 | INFO     | ***************************************
[2026-01-11 16:18:18] 2026-01-11 21:17:47,043 | INFO     | 
[2026-01-11 16:18:18] 2026-01-11 21:17:47,052 | INFO     | architecture information:
[2026-01-11 16:18:18] 2026-01-11 21:17:47,055 | INFO     | executing command: cat /etc/os-release
[2026-01-11 16:18:18] 2026-01-11 21:17:47,081 | INFO     | cat /etc/os-release:
[2026-01-11 16:18:18] NAME="CentOS Linux"
[2026-01-11 16:18:18] VERSION="7 (Core)"
[2026-01-11 16:18:18] ID="centos"
[2026-01-11 16:18:18] ID_LIKE="rhel fedora"
[2026-01-11 16:18:18] VERSION_ID="7"
[2026-01-11 16:18:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 16:18:18] ANSI_COLOR="0;31"
[2026-01-11 16:18:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 16:18:18] HOME_URL="https://www.centos.org/"
[2026-01-11 16:18:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 16:18:18] 
[2026-01-11 16:18:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 16:18:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 16:18:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 16:18:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 16:18:18] 
[2026-01-11 16:18:18] 2026-01-11 21:17:47,081 | INFO     | ***************************************
[2026-01-11 16:18:18] 2026-01-11 21:17:47,587 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-11 16:18:18] 2026-01-11 21:17:47,612 | INFO     | sufficient remaining disk space (128649789440 B)
[2026-01-11 16:18:18] 2026-01-11 21:17:47,612 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 16:18:18] 2026-01-11 21:17:47,613 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 16:18:18] 2026-01-11 21:17:47,613 | INFO     | update_server=False
[2026-01-11 16:18:18] 2026-01-11 21:17:47,613 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 16:18:18] 2026-01-11 21:17:47,613 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 16:18:18] 2026-01-11 21:17:47,680 | INFO     | all job control threads have been joined
[2026-01-11 16:18:18] 2026-01-11 21:17:47,747 | INFO     | all data control threads have been joined
[2026-01-11 16:18:18] 2026-01-11 21:17:47,954 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 16:18:18] 2026-01-11 21:17:47,954 | INFO     | aborting loop
[2026-01-11 16:18:18] 2026-01-11 21:17:48,049 | INFO     | all payload control threads have been joined
[2026-01-11 16:18:18] 2026-01-11 21:17:48,620 | INFO     | [job] retrieve thread has finished
[2026-01-11 16:18:18] 2026-01-11 21:17:48,704 | INFO     | [job] control thread has finished
[2026-01-11 16:18:18] 2026-01-11 21:17:48,753 | INFO     | [data] control thread has finished
[2026-01-11 16:18:18] 2026-01-11 21:17:48,960 | INFO     | [job] job monitor thread has finished
[2026-01-11 16:18:18] 2026-01-11 21:17:48,976 | INFO     | [payload] validate_post thread has finished
[2026-01-11 16:18:18] 2026-01-11 21:17:48,984 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 16:18:18] 2026-01-11 21:17:49,055 | INFO     | [payload] control thread has finished
[2026-01-11 16:18:18] 2026-01-11 21:17:49,271 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 16:18:18] 2026-01-11 21:17:49,344 | INFO     | [payload] failed_post thread has finished
[2026-01-11 16:18:18] 2026-01-11 21:17:49,373 | INFO     | [job] validate thread has finished
[2026-01-11 16:18:18] 2026-01-11 21:17:49,374 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 16:18:18] 2026-01-11 21:17:49,433 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 16:18:18] 2026-01-11 21:17:49,620 | INFO     | [data] copytool_out thread has finished
[2026-01-11 16:18:18] 2026-01-11 21:17:49,639 | INFO     | [data] copytool_in thread has finished
[2026-01-11 16:18:18] 2026-01-11 21:17:49,683 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 16:18:18] 2026-01-11 21:17:50,142 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 16:18:18] 2026-01-11 21:17:50,688 | INFO     | [job] queue monitor thread has finished
[2026-01-11 16:18:18] 2026-01-11 21:17:53,017 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 16:18:18] 2026-01-11 21:17:58,461 | INFO     | [monitor] cgroup control has ended
[2026-01-11 16:18:18] 2026-01-11 21:17:58,971 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140568266495808)>', '<ExcThread(monitor, started 140567501600512)>']
[2026-01-11 16:18:18] 2026-01-11 21:18:03,998 | INFO     | all workflow threads have been joined
[2026-01-11 16:18:18] 2026-01-11 21:18:03,998 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 16:18:18] 2026-01-11 21:18:03,999 | INFO     | traces error code: 0
[2026-01-11 16:18:18] 2026-01-11 21:18:03,999 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 16:18:18] 2026-01-11 21:18:18,399 | INFO     | PID=874594 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 16:18:18] 2026-01-11 21:18:18,399 | INFO     | .. there are 15 such processes running
[2026-01-11 16:18:18] 2026-01-11 21:18:18,399 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 16:18:18] 2026-01-11 21:18:18,399 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 16:18:18] 2026-01-11 21:18:18,399 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 16:18:18] 2026-01-11 21:18:18,400 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 16:18:18] 2026-01-11 21:18:18,400 | INFO     | [monitor] control thread has ended
[2026-01-11 16:18:18] 2026-01-11 21:18:18,528 [wrapper] ==== pilot stdout END ====
[2026-01-11 16:18:18] 2026-01-11 21:18:18,531 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 16:18:18] 2026-01-11 21:18:18,534 [wrapper] pilotpid: 874594
[2026-01-11 16:18:18] 2026-01-11 21:18:18,536 [wrapper] Pilot exit status: 0
[2026-01-11 16:18:18] 2026-01-11 21:18:18,581 [wrapper] pandaids: 6966428582
[2026-01-11 16:18:18] 2026-01-11 21:18:18,768 [wrapper] cleanup supervisor_pilot 1111798 874595
[2026-01-11 16:18:18] 2026-01-11 21:18:18,772 [wrapper] Test setup, not cleaning
[2026-01-11 16:18:18] 2026-01-11 21:18:18,774 [wrapper] apfmon messages muted
[2026-01-11 16:18:18] 2026-01-11 21:18:18,776 [wrapper] ==== wrapper stdout END ====
[2026-01-11 16:18:18] 2026-01-11 21:18:18,778 [wrapper] ==== wrapper stderr END ====
[2026-01-11 16:18:18]  *** Error codes and diagnostics ***
[2026-01-11 16:18:18]     "exeErrorCode": 0,
[2026-01-11 16:18:18]     "exeErrorDiag": "",
[2026-01-11 16:18:18]     "pilotErrorCode": 0,
[2026-01-11 16:18:18]     "pilotErrorDiag": "",
[2026-01-11 16:18:18]  *** Listing of results directory ***
[2026-01-11 16:18:18] total 440008
[2026-01-11 16:18:18] -rw-r--r--. 1 boincer umatlas    579449 Jan 11 14:26 pilot3.tar.gz
[2026-01-11 16:18:18] -rwx------. 1 boincer umatlas     36322 Jan 11 14:45 runpilot2-wrapper.sh
[2026-01-11 16:18:18] -rw-r--r--. 1 boincer umatlas      5112 Jan 11 14:45 queuedata.json
[2026-01-11 16:18:18] -rw-r--r--. 1 boincer umatlas       100 Jan 11 14:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 16:18:18] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 11 14:46 run_atlas
[2026-01-11 16:18:18] -rw-r--r--. 1 boincer umatlas       105 Jan 11 14:46 job.xml
[2026-01-11 16:18:18] -rw-r--r--. 2 boincer umatlas 396135850 Jan 11 14:46 EVNT.47962006._000096.pool.root.1
[2026-01-11 16:18:18] -rw-r--r--. 2 boincer umatlas     15847 Jan 11 14:46 start_atlas.sh
[2026-01-11 16:18:18] drwxrwx--x. 2 boincer umatlas      4096 Jan 11 14:46 shared
[2026-01-11 16:18:18] -rw-r--r--. 2 boincer umatlas    592612 Jan 11 14:46 input.tar.gz
[2026-01-11 16:18:18] -rw-r--r--. 1 boincer umatlas         0 Jan 11 14:46 boinc_lockfile
[2026-01-11 16:18:18] -rw-r--r--. 1 boincer umatlas      2888 Jan 11 14:46 pandaJob.out
[2026-01-11 16:18:18] -rw-------. 1 boincer umatlas        57 Jan 11 14:46 setup.sh.local
[2026-01-11 16:18:18] -rw-------. 1 boincer umatlas    989946 Jan 11 14:46 agis_schedconf.cvmfs.json
[2026-01-11 16:18:18] -rw-------. 1 boincer umatlas   1516240 Jan 11 14:46 agis_ddmendpoints.agis.ALL.json
[2026-01-11 16:18:18] drwx------. 5 boincer umatlas      4096 Jan 11 14:46 pilot3
[2026-01-11 16:18:18] -rw-r--r--. 1 boincer umatlas       529 Jan 11 15:45 boinc_task_state.xml
[2026-01-11 16:18:18] -rw-r--r--. 1 boincer umatlas      6945 Jan 11 16:13 init_data.xml
[2026-01-11 16:18:18] -rw-------. 1 boincer umatlas  46420358 Jan 11 16:17 HITS.47962010._003081.pool.root.1
[2026-01-11 16:18:18] -rw-------. 1 boincer umatlas      1029 Jan 11 16:17 memory_monitor_summary.json
[2026-01-11 16:18:18] -rw-------. 1 boincer umatlas   1295681 Jan 11 16:17 log.47962010._003081.job.log.tgz.1
[2026-01-11 16:18:18] -rw-------. 1 boincer umatlas        95 Jan 11 16:17 pilot_heartbeat.json
[2026-01-11 16:18:18] -rw-------. 1 boincer umatlas      8532 Jan 11 16:17 heartbeat.json
[2026-01-11 16:18:18] -rw-r--r--. 1 boincer umatlas      8192 Jan 11 16:18 boinc_mmap_file
[2026-01-11 16:18:18] -rw-r--r--. 1 boincer umatlas        27 Jan 11 16:18 wrapper_checkpoint.txt
[2026-01-11 16:18:18] -rw-------. 1 boincer umatlas       822 Jan 11 16:18 pilotlog.txt
[2026-01-11 16:18:18] -rw-------. 1 boincer umatlas    755868 Jan 11 16:18 log.47962010._003081.job.log.1
[2026-01-11 16:18:18] -rw-------. 1 boincer umatlas       353 Jan 11 16:18 output.list
[2026-01-11 16:18:18] -rw-r--r--. 1 boincer umatlas       620 Jan 11 16:18 runtime_log
[2026-01-11 16:18:18] -rw-------. 1 boincer umatlas   2068480 Jan 11 16:18 result.tar.gz
[2026-01-11 16:18:18] -rw-------. 1 boincer umatlas       653 Jan 11 16:18 stiNDm1YGz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmU3mKDm4PBqFn.diag
[2026-01-11 16:18:18] -rw-r--r--. 1 boincer umatlas      9337 Jan 11 16:18 runtime_log.err
[2026-01-11 16:18:18] -rw-r--r--. 1 boincer umatlas     22365 Jan 11 16:18 stderr.txt
[2026-01-11 16:18:18] HITS file was successfully produced:
[2026-01-11 16:18:18] -rw-------. 1 boincer umatlas 46420358 Jan 11 16:17 shared/HITS.pool.root.1
[2026-01-11 16:18:18]  *** Contents of shared directory: ***
[2026-01-11 16:18:18] total 434804
[2026-01-11 16:18:18] -rw-r--r--. 2 boincer umatlas 396135850 Jan 11 14:46 ATLAS.root_0
[2026-01-11 16:18:18] -rw-r--r--. 2 boincer umatlas     15847 Jan 11 14:46 start_atlas.sh
[2026-01-11 16:18:18] -rw-r--r--. 2 boincer umatlas    592612 Jan 11 14:46 input.tar.gz
[2026-01-11 16:18:18] -rw-------. 1 boincer umatlas  46420358 Jan 11 16:17 HITS.pool.root.1
[2026-01-11 16:18:18] -rw-------. 1 boincer umatlas   2068480 Jan 11 16:18 result.tar.gz
16:18:20 (870926): run_atlas exited; CPU time 12696.547376
16:18:20 (870926): called boinc_finish(0)

</stderr_txt>
]]>

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