Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:55:02 (2649480): wrapper (7.7.26015): starting
06:55:02 (2649480): wrapper: running run_atlas (--nthreads 9)
[2026-01-11 06:55:02] Arguments: --nthreads 9
[2026-01-11 06:55:02] Threads: 9
[2026-01-11 06:55:02] Checking for CVMFS
[2026-01-11 06:55:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 06:55:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 06:55:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 06:55:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 06:55:04] 2.13.3.0 16090 96208 414364 155015 3 401 22908612 32935937 36789 16776704 0 1029316794 99.551 1185541945 52080 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-11 06:55:04] CVMFS is ok
[2026-01-11 06:55:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 06:55:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 06:55:04] Further information can be found at the LHC@home message board.
[2026-01-11 06:55:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 06:55:04] Checking for apptainer binary...
[2026-01-11 06:55:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 06:55:04] Running /usr/bin/apptainer --version
[2026-01-11 06:55:04] apptainer version 1.4.5-2.el9
[2026-01-11 06:55:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 06:55:05] c7-9-15.aglt2.org
[2026-01-11 06:55:05] apptainer works
[2026-01-11 06:55:05] Set ATHENA_PROC_NUMBER=9
[2026-01-11 06:55:05] Set ATHENA_CORE_NUMBER=9
[2026-01-11 06:55:05] Starting ATLAS job with PandaID=6966171656
[2026-01-11 06:55:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 07:48:52]  *** The last 200 lines of the pilot log: ***
[2026-01-11 07:48:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-11 07:48:52]  replicas=None
[2026-01-11 07:48:52]  scope=mc16_13TeV
[2026-01-11 07:48:52]  status=None
[2026-01-11 07:48:52]  status_code=0
[2026-01-11 07:48:52]  storage_token=
[2026-01-11 07:48:52]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6966171656/log.47962010._003073.job.log.tgz.1
[2026-01-11 07:48:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/3d/08/log.47962010._003073.job.log.tgz.1
[2026-01-11 07:48:52]  workdir=None
[2026-01-11 07:48:52] ]
[2026-01-11 07:48:52] 2026-01-11 12:48:11,307 | INFO     | transferring file log.47962010._003073.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6966171656/log.47962010._003073.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-11 07:48:52] 2026-01-11 12:48:11,307 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6966171656/log.47962010._003073.job.log.tgz.1 /tmp/boinchome/slots/3/log.47962010._003073.job
[2026-01-11 07:48:52] 2026-01-11 12:48:11,334 | INFO     | adding to output.list: log.47962010._003073.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/3d/08/log.47962010._003073.job.log.tgz.
[2026-01-11 07:48:52] 2026-01-11 12:48:11,335 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 07:48:52] 2026-01-11 12:48:11,335 | INFO     | summary of transferred files:
[2026-01-11 07:48:52] 2026-01-11 12:48:11,335 | INFO     |  -- lfn=log.47962010._003073.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 07:48:52] 2026-01-11 12:48:11,335 | INFO     | stage-out finished correctly
[2026-01-11 07:48:52] 2026-01-11 12:48:12,334 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 07:48:52] 2026-01-11 12:48:12,540 | INFO     | time since job start (3115s) is within the limit (349056.0s)
[2026-01-11 07:48:52] 2026-01-11 12:48:12,811 | INFO     | monitor loop #238: job 0:6966171656 is in state 'finished'
[2026-01-11 07:48:52] 2026-01-11 12:48:12,812 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 07:48:52] 2026-01-11 12:48:13,975 | INFO     | job 6966171656 has state=finished
[2026-01-11 07:48:52] 2026-01-11 12:48:13,976 | INFO     | preparing for final server update for job 6966171656 in state='finished'
[2026-01-11 07:48:52] 2026-01-11 12:48:13,976 | INFO     | this job has now completed (state=finished)
[2026-01-11 07:48:52] 2026-01-11 12:48:13,976 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 07:48:52] 2026-01-11 12:48:13,976 | INFO     | log transfer has been attempted: DONE
[2026-01-11 07:48:52] 2026-01-11 12:48:13,976 | INFO     | job 6966171656 has finished - writing final server update
[2026-01-11 07:48:52] 2026-01-11 12:48:13,976 | INFO     | total number of processed events: 50 (read)
[2026-01-11 07:48:52] 2026-01-11 12:48:13,984 | INFO     | executing command: lscpu
[2026-01-11 07:48:52] 2026-01-11 12:48:14,037 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 07:48:52] 2026-01-11 12:48:14,547 | INFO     | time since job start (3117s) is within the limit (349056.0s)
[2026-01-11 07:48:52] 2026-01-11 12:48:15,315 | INFO     | monitor loop #239: job 0:6966171656 is in state 'finished'
[2026-01-11 07:48:52] 2026-01-11 12:48:15,315 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 07:48:52] 2026-01-11 12:48:16,553 | INFO     | time since job start (3119s) is within the limit (349056.0s)
[2026-01-11 07:48:52] 2026-01-11 12:48:17,817 | INFO     | monitor loop #240: job 0:6966171656 is in state 'finished'
[2026-01-11 07:48:52] 2026-01-11 12:48:17,818 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 07:48:52] 2026-01-11 12:48:18,000 | INFO     | PID=2655549 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 07:48:52] 2026-01-11 12:48:18,000 | INFO     | .. there are 38 such processes running
[2026-01-11 07:48:52] 2026-01-11 12:48:18,942 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-11 07:48:52] 2026-01-11 12:48:18,947 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.222531249999
[2026-01-11 07:48:52] 2026-01-11 12:48:18,959 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6966171656/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 07:48:52] 2026-01-11 12:48:18,960 | INFO     | extracted standard info from prmon json
[2026-01-11 07:48:52] 2026-01-11 12:48:18,960 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 07:48:52] 2026-01-11 12:48:18,960 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 07:48:52] 2026-01-11 12:48:18,961 | INFO     | fitting pss+swap vs Time
[2026-01-11 07:48:52] 2026-01-11 12:48:18,961 | INFO     | sum of square deviations: 22973376.404761925
[2026-01-11 07:48:52] 2026-01-11 12:48:18,961 | INFO     | sum of deviations: 23427078162.000004
[2026-01-11 07:48:52] 2026-01-11 12:48:18,961 | INFO     | mean x: 1768134291.1190476
[2026-01-11 07:48:52] 2026-01-11 12:48:18,961 | INFO     | mean y: 2011210.0
[2026-01-11 07:48:52] 2026-01-11 12:48:18,961 | INFO     | intersect: -1803051206094.723
[2026-01-11 07:48:52] 2026-01-11 12:48:18,961 | INFO     | chi2: 4.750294200914904
[2026-01-11 07:48:52] 2026-01-11 12:48:18,961 | INFO     | current memory leak: 1019.75 B/s (using 42 data points, chi2=4.75)
[2026-01-11 07:48:52] 2026-01-11 12:48:18,961 | INFO     | could have reported an average CPU frequency of 3799 MHz (5 samples)
[2026-01-11 07:48:52] 2026-01-11 12:48:18,962 | INFO     | ..............................
[2026-01-11 07:48:52] 2026-01-11 12:48:18,962 | INFO     | . Timing measurements:
[2026-01-11 07:48:52] 2026-01-11 12:48:18,962 | INFO     | . get job = 0 s
[2026-01-11 07:48:52] 2026-01-11 12:48:18,962 | INFO     | . initial setup = 5 s
[2026-01-11 07:48:52] 2026-01-11 12:48:18,962 | INFO     | . payload setup = 63 s
[2026-01-11 07:48:52] 2026-01-11 12:48:18,962 | INFO     | . stage-in = 0 s
[2026-01-11 07:48:52] 2026-01-11 12:48:18,962 | INFO     | . payload execution = 2978 s
[2026-01-11 07:48:52] 2026-01-11 12:48:18,962 | INFO     | . stage-out = 0 s
[2026-01-11 07:48:52] 2026-01-11 12:48:18,962 | INFO     | . log creation = 0 s
[2026-01-11 07:48:52] 2026-01-11 12:48:18,962 | INFO     | ..............................
[2026-01-11 07:48:52] 2026-01-11 12:48:19,007 | INFO     | time since job start (3122s) is within the limit (349056.0s)
[2026-01-11 07:48:52] 2026-01-11 12:48:19,009 | INFO     | 
[2026-01-11 07:48:52] 2026-01-11 12:48:19,009 | INFO     | job summary report
[2026-01-11 07:48:52] 2026-01-11 12:48:19,009 | INFO     | --------------------------------------------------
[2026-01-11 07:48:52] 2026-01-11 12:48:19,009 | INFO     | PanDA job id: 6966171656
[2026-01-11 07:48:52] 2026-01-11 12:48:19,009 | INFO     | task id: 47962010
[2026-01-11 07:48:52] 2026-01-11 12:48:19,009 | INFO     | errors: (none)
[2026-01-11 07:48:52] 2026-01-11 12:48:19,009 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 07:48:52] 2026-01-11 12:48:19,009 | INFO     | pilot state: finished 
[2026-01-11 07:48:52] 2026-01-11 12:48:19,009 | INFO     | transexitcode: 0
[2026-01-11 07:48:52] 2026-01-11 12:48:19,009 | INFO     | exeerrorcode: 0
[2026-01-11 07:48:52] 2026-01-11 12:48:19,009 | INFO     | exeerrordiag: 
[2026-01-11 07:48:52] 2026-01-11 12:48:19,009 | INFO     | exitcode: 0
[2026-01-11 07:48:52] 2026-01-11 12:48:19,009 | INFO     | exitmsg: OK
[2026-01-11 07:48:52] 2026-01-11 12:48:19,009 | INFO     | cpuconsumptiontime: 7905 s
[2026-01-11 07:48:52] 2026-01-11 12:48:19,010 | INFO     | nevents: 50
[2026-01-11 07:48:52] 2026-01-11 12:48:19,010 | INFO     | neventsw: 0
[2026-01-11 07:48:52] 2026-01-11 12:48:19,010 | INFO     | pid: 2665880
[2026-01-11 07:48:52] 2026-01-11 12:48:19,010 | INFO     | pgrp: 2665880
[2026-01-11 07:48:52] 2026-01-11 12:48:19,010 | INFO     | corecount: 9
[2026-01-11 07:48:52] 2026-01-11 12:48:19,010 | INFO     | event service: False
[2026-01-11 07:48:52] 2026-01-11 12:48:19,010 | INFO     | sizes: {0: 2284397, 1: 2284596, 12: 2284596, 23: 2284624, 31: 2284914, 33: 2284942, 3045: 2311230, 3046: 2320224, 3047: 2320280, 3054: 2320558}
[2026-01-11 07:48:52] 2026-01-11 12:48:19,010 | INFO     | --------------------------------------------------
[2026-01-11 07:48:52] 2026-01-11 12:48:19,010 | INFO     | 
[2026-01-11 07:48:52] 2026-01-11 12:48:19,010 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-11 07:48:52] 2026-01-11 12:48:19,026 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,026 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,026 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,026 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,026 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,026 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,026 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,026 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,027 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,027 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,027 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,027 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,027 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,027 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,027 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,027 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,027 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,027 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 07:48:52] 2026-01-11 12:48:19,027 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,027 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 07:48:52] 2026-01-11 12:48:19,027 | INFO     | job 6966171656 has completed (purged errors)
[2026-01-11 07:48:52] 2026-01-11 12:48:19,027 | INFO     | overall cleanup function is called
[2026-01-11 07:48:52] 2026-01-11 12:48:20,040 | INFO     | --- collectZombieJob: --- 10, [2665880]
[2026-01-11 07:48:52] 2026-01-11 12:48:20,042 | INFO     | zombie collector waiting for pid 2665880
[2026-01-11 07:48:52] 2026-01-11 12:48:20,042 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 07:48:52] 2026-01-11 12:48:20,042 | INFO     | collected zombie processes
[2026-01-11 07:48:52] 2026-01-11 12:48:20,042 | INFO     | will attempt to kill all subprocesses of pid=2665880
[2026-01-11 07:48:52] 2026-01-11 12:48:20,340 | INFO     | process IDs to be killed: [2665880] (in reverse order)
[2026-01-11 07:48:52] 2026-01-11 12:48:20,476 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 07:48:52] 2026-01-11 12:48:20,476 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 07:48:52] 2026-01-11 12:48:20,496 | INFO     | did not find any defunct processes belonging to 2665880
[2026-01-11 07:48:52] 2026-01-11 12:48:20,517 | INFO     | did not find any defunct processes belonging to 2665880
[2026-01-11 07:48:52] 2026-01-11 12:48:20,517 | INFO     | ready for new job
[2026-01-11 07:48:52] 2026-01-11 12:48:20,517 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 07:48:52] 2026-01-11 12:48:20,518 | INFO     | ***************************************
[2026-01-11 07:48:52] 2026-01-11 12:48:20,520 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 07:48:52] 2026-01-11 12:48:20,520 | INFO     | ***************************************
[2026-01-11 07:48:52] 2026-01-11 12:48:20,520 | INFO     | 
[2026-01-11 07:48:52] 2026-01-11 12:48:20,525 | INFO     | architecture information:
[2026-01-11 07:48:52] 2026-01-11 12:48:20,525 | INFO     | executing command: cat /etc/os-release
[2026-01-11 07:48:52] 2026-01-11 12:48:20,539 | INFO     | cat /etc/os-release:
[2026-01-11 07:48:52] NAME="CentOS Linux"
[2026-01-11 07:48:52] VERSION="7 (Core)"
[2026-01-11 07:48:52] ID="centos"
[2026-01-11 07:48:52] ID_LIKE="rhel fedora"
[2026-01-11 07:48:52] VERSION_ID="7"
[2026-01-11 07:48:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 07:48:52] ANSI_COLOR="0;31"
[2026-01-11 07:48:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 07:48:52] HOME_URL="https://www.centos.org/"
[2026-01-11 07:48:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 07:48:52] 
[2026-01-11 07:48:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 07:48:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 07:48:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 07:48:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 07:48:52] 
[2026-01-11 07:48:52] 2026-01-11 12:48:20,539 | INFO     | ***************************************
[2026-01-11 07:48:52] 2026-01-11 12:48:21,042 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-11 07:48:52] 2026-01-11 12:48:21,057 | INFO     | sufficient remaining disk space (76385615872 B)
[2026-01-11 07:48:52] 2026-01-11 12:48:21,058 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 07:48:52] 2026-01-11 12:48:21,058 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 07:48:52] 2026-01-11 12:48:21,058 | INFO     | update_server=False
[2026-01-11 07:48:52] 2026-01-11 12:48:21,058 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 07:48:52] 2026-01-11 12:48:21,330 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 07:48:52] 2026-01-11 12:48:21,331 | INFO     | aborting loop
[2026-01-11 07:48:52] 2026-01-11 12:48:21,434 | INFO     | all payload control threads have been joined
[2026-01-11 07:48:52] 2026-01-11 12:48:21,831 | INFO     | [monitor] cgroup control has ended
[2026-01-11 07:48:52] 2026-01-11 12:48:21,835 | INFO     | all data control threads have been joined
[2026-01-11 07:48:52] 2026-01-11 12:48:21,865 | INFO     | all job control threads have been joined
[2026-01-11 07:48:52] 2026-01-11 12:48:21,913 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 07:48:52] 2026-01-11 12:48:22,063 | INFO     | [job] retrieve thread has finished
[2026-01-11 07:48:52] 2026-01-11 12:48:22,337 | INFO     | [job] job monitor thread has finished
[2026-01-11 07:48:52] 2026-01-11 12:48:22,440 | INFO     | [payload] control thread has finished
[2026-01-11 07:48:52] 2026-01-11 12:48:22,535 | INFO     | [payload] validate_post thread has finished
[2026-01-11 07:48:52] 2026-01-11 12:48:22,665 | INFO     | [payload] failed_post thread has finished
[2026-01-11 07:48:52] 2026-01-11 12:48:22,682 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 07:48:52] 2026-01-11 12:48:22,794 | INFO     | [data] copytool_in thread has finished
[2026-01-11 07:48:52] 2026-01-11 12:48:22,841 | INFO     | [data] control thread has finished
[2026-01-11 07:48:52] 2026-01-11 12:48:22,870 | INFO     | [job] control thread has finished
[2026-01-11 07:48:52] 2026-01-11 12:48:22,923 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 07:48:52] 2026-01-11 12:48:23,147 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 07:48:52] 2026-01-11 12:48:23,172 | INFO     | [job] validate thread has finished
[2026-01-11 07:48:52] 2026-01-11 12:48:23,281 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 07:48:52] 2026-01-11 12:48:23,920 | INFO     | [data] copytool_out thread has finished
[2026-01-11 07:48:52] 2026-01-11 12:48:24,023 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 07:48:52] 2026-01-11 12:48:25,028 | INFO     | [job] queue monitor thread has finished
[2026-01-11 07:48:52] 2026-01-11 12:48:26,930 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 07:48:52] 2026-01-11 12:48:31,128 | INFO     | job.realtimelogging is not enabled
[2026-01-11 07:48:52] 2026-01-11 12:48:32,133 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 07:48:52] 2026-01-11 12:48:32,394 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140429772048192)>', '<ExcThread(monitor, started 140428946941696)>']
[2026-01-11 07:48:52] 2026-01-11 12:48:37,420 | INFO     | all workflow threads have been joined
[2026-01-11 07:48:52] 2026-01-11 12:48:37,420 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 07:48:52] 2026-01-11 12:48:37,421 | INFO     | traces error code: 0
[2026-01-11 07:48:52] 2026-01-11 12:48:37,421 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 07:48:52] 2026-01-11 12:48:52,494 | INFO     | PID=2655549 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 07:48:52] 2026-01-11 12:48:52,495 | INFO     | .. there are 38 such processes running
[2026-01-11 07:48:52] 2026-01-11 12:48:52,495 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 07:48:52] 2026-01-11 12:48:52,495 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 07:48:52] 2026-01-11 12:48:52,495 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 07:48:52] 2026-01-11 12:48:52,495 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 07:48:52] 2026-01-11 12:48:52,495 | INFO     | [monitor] control thread has ended
[2026-01-11 07:48:52] 2026-01-11 12:48:52,574 [wrapper] ==== pilot stdout END ====
[2026-01-11 07:48:52] 2026-01-11 12:48:52,580 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 07:48:52] 2026-01-11 12:48:52,583 [wrapper] pilotpid: 2655549
[2026-01-11 07:48:52] 2026-01-11 12:48:52,586 [wrapper] Pilot exit status: 0
[2026-01-11 07:48:52] 2026-01-11 12:48:52,596 [wrapper] pandaids: 6966171656
[2026-01-11 07:48:52] 2026-01-11 12:48:52,693 [wrapper] cleanup supervisor_pilot 2830004 2655550
[2026-01-11 07:48:52] 2026-01-11 12:48:52,696 [wrapper] Test setup, not cleaning
[2026-01-11 07:48:52] 2026-01-11 12:48:52,698 [wrapper] apfmon messages muted
[2026-01-11 07:48:52] 2026-01-11 12:48:52,701 [wrapper] ==== wrapper stdout END ====
[2026-01-11 07:48:52] 2026-01-11 12:48:52,704 [wrapper] ==== wrapper stderr END ====
[2026-01-11 07:48:52]  *** Error codes and diagnostics ***
[2026-01-11 07:48:52]     "exeErrorCode": 0,
[2026-01-11 07:48:52]     "exeErrorDiag": "",
[2026-01-11 07:48:52]     "pilotErrorCode": 0,
[2026-01-11 07:48:52]     "pilotErrorDiag": "",
[2026-01-11 07:48:52]  *** Listing of results directory ***
[2026-01-11 07:48:52] total 430456
[2026-01-11 07:48:52] -rw-r--r--. 1 boincer umatlas    579449 Jan 11 06:17 pilot3.tar.gz
[2026-01-11 07:48:52] -rwx------. 1 boincer umatlas     36322 Jan 11 06:42 runpilot2-wrapper.sh
[2026-01-11 07:48:52] -rw-r--r--. 1 boincer umatlas      5112 Jan 11 06:42 queuedata.json
[2026-01-11 07:48:52] -rw-r--r--. 1 boincer umatlas       100 Jan 11 06:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 07:48:52] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 11 06:55 run_atlas
[2026-01-11 07:48:52] -rw-r--r--. 1 boincer umatlas       105 Jan 11 06:55 job.xml
[2026-01-11 07:48:52] -rw-r--r--. 2 boincer umatlas 390344352 Jan 11 06:55 EVNT.47962006._000079.pool.root.1
[2026-01-11 07:48:52] -rw-r--r--. 2 boincer umatlas    592613 Jan 11 06:55 input.tar.gz
[2026-01-11 07:48:52] drwxrwx--x. 2 boincer umatlas      4096 Jan 11 06:55 shared
[2026-01-11 07:48:52] -rw-r--r--. 2 boincer umatlas     15847 Jan 11 06:55 start_atlas.sh
[2026-01-11 07:48:52] -rw-r--r--. 1 boincer umatlas         0 Jan 11 06:55 boinc_lockfile
[2026-01-11 07:48:52] -rw-r--r--. 1 boincer umatlas      2889 Jan 11 06:55 pandaJob.out
[2026-01-11 07:48:52] -rw-------. 1 boincer umatlas        57 Jan 11 06:55 setup.sh.local
[2026-01-11 07:48:52] -rw-------. 1 boincer umatlas    989548 Jan 11 06:56 agis_schedconf.cvmfs.json
[2026-01-11 07:48:52] -rw-------. 1 boincer umatlas   1516240 Jan 11 06:56 agis_ddmendpoints.agis.ALL.json
[2026-01-11 07:48:52] drwx------. 5 boincer umatlas      4096 Jan 11 06:56 pilot3
[2026-01-11 07:48:52] -rw-r--r--. 1 boincer umatlas       528 Jan 11 07:42 boinc_task_state.xml
[2026-01-11 07:48:52] -rw-r--r--. 1 boincer umatlas      7170 Jan 11 07:45 init_data.xml
[2026-01-11 07:48:52] -rw-------. 1 boincer umatlas  43070157 Jan 11 07:48 HITS.47962010._003073.pool.root.1
[2026-01-11 07:48:52] -rw-------. 1 boincer umatlas      1032 Jan 11 07:48 memory_monitor_summary.json
[2026-01-11 07:48:52] -rw-------. 1 boincer umatlas        95 Jan 11 07:48 pilot_heartbeat.json
[2026-01-11 07:48:52] -rw-------. 1 boincer umatlas   1261549 Jan 11 07:48 log.47962010._003073.job.log.tgz.1
[2026-01-11 07:48:52] -rw-------. 1 boincer umatlas      8528 Jan 11 07:48 heartbeat.json
[2026-01-11 07:48:52] -rw-r--r--. 1 boincer umatlas        26 Jan 11 07:48 wrapper_checkpoint.txt
[2026-01-11 07:48:52] -rw-r--r--. 1 boincer umatlas      8192 Jan 11 07:48 boinc_mmap_file
[2026-01-11 07:48:52] -rw-------. 1 boincer umatlas       823 Jan 11 07:48 pilotlog.txt
[2026-01-11 07:48:52] -rw-------. 1 boincer umatlas    470980 Jan 11 07:48 log.47962010._003073.job.log.1
[2026-01-11 07:48:52] -rw-------. 1 boincer umatlas       353 Jan 11 07:48 output.list
[2026-01-11 07:48:52] -rw-r--r--. 1 boincer umatlas       620 Jan 11 07:48 runtime_log
[2026-01-11 07:48:52] -rw-------. 1 boincer umatlas   1751040 Jan 11 07:48 result.tar.gz
[2026-01-11 07:48:52] -rw-r--r--. 1 boincer umatlas      9337 Jan 11 07:48 runtime_log.err
[2026-01-11 07:48:52] -rw-------. 1 boincer umatlas       651 Jan 11 07:48 LKnLDmW18y8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDml2mKDmpX2sZn.diag
[2026-01-11 07:48:52] -rw-r--r--. 1 boincer umatlas     22075 Jan 11 07:48 stderr.txt
[2026-01-11 07:48:52] HITS file was successfully produced:
[2026-01-11 07:48:52] -rw-------. 1 boincer umatlas 43070157 Jan 11 07:48 shared/HITS.pool.root.1
[2026-01-11 07:48:52]  *** Contents of shared directory: ***
[2026-01-11 07:48:52] total 425568
[2026-01-11 07:48:52] -rw-r--r--. 2 boincer umatlas 390344352 Jan 11 06:55 ATLAS.root_0
[2026-01-11 07:48:52] -rw-r--r--. 2 boincer umatlas    592613 Jan 11 06:55 input.tar.gz
[2026-01-11 07:48:52] -rw-r--r--. 2 boincer umatlas     15847 Jan 11 06:55 start_atlas.sh
[2026-01-11 07:48:52] -rw-------. 1 boincer umatlas  43070157 Jan 11 07:48 HITS.pool.root.1
[2026-01-11 07:48:52] -rw-------. 1 boincer umatlas   1751040 Jan 11 07:48 result.tar.gz
07:48:54 (2649480): run_atlas exited; CPU time 7908.831703
07:48:54 (2649480): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN