Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:43:47 (2567186): wrapper (7.7.26015): starting
06:43:47 (2567186): wrapper: running run_atlas (--nthreads 11)
[2026-01-11 06:43:47] Arguments: --nthreads 11
[2026-01-11 06:43:47] Threads: 11
[2026-01-11 06:43:47] Checking for CVMFS
[2026-01-11 06:43:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 06:43:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 06:43:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 06:43:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 06:43:48] 2.13.3.0 16090 96197 412416 155015 2 267 21976052 32935937 35269 16776704 0 1029041702 99.551 1185247514 52093 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-11 06:43:48] CVMFS is ok
[2026-01-11 06:43:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 06:43:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 06:43:48] Further information can be found at the LHC@home message board.
[2026-01-11 06:43:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 06:43:48] Checking for apptainer binary...
[2026-01-11 06:43:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 06:43:48] Running /usr/bin/apptainer --version
[2026-01-11 06:43:48] apptainer version 1.4.5-2.el9
[2026-01-11 06:43:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 06:43:49] c7-9-15.aglt2.org
[2026-01-11 06:43:49] apptainer works
[2026-01-11 06:43:49] Set ATHENA_PROC_NUMBER=11
[2026-01-11 06:43:49] Set ATHENA_CORE_NUMBER=11
[2026-01-11 06:43:49] Starting ATLAS job with PandaID=6966171649
[2026-01-11 06:43:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 07:36:39]  *** The last 200 lines of the pilot log: ***
[2026-01-11 07:36:39]  workdir=None
[2026-01-11 07:36:39] ]
[2026-01-11 07:36:39] 2026-01-11 12:35:39,931 | INFO     | transferring file log.47962010._003066.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6966171649/log.47962010._003066.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-11 07:36:39] 2026-01-11 12:35:39,931 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6966171649/log.47962010._003066.job.log.tgz.1 /tmp/boinchome/slots/2/log.47962010._003066.job
[2026-01-11 07:36:39] 2026-01-11 12:35:40,023 | INFO     | adding to output.list: log.47962010._003066.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/a9/88/log.47962010._003066.job.log.tgz.
[2026-01-11 07:36:39] 2026-01-11 12:35:40,024 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 07:36:39] 2026-01-11 12:35:40,028 | INFO     | summary of transferred files:
[2026-01-11 07:36:39] 2026-01-11 12:35:40,028 | INFO     |  -- lfn=log.47962010._003066.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 07:36:39] 2026-01-11 12:35:40,029 | INFO     | stage-out finished correctly
[2026-01-11 07:36:39] 2026-01-11 12:35:40,822 | INFO     | monitor loop #207: job 0:6966171649 is in state 'finished'
[2026-01-11 07:36:39] 2026-01-11 12:35:40,823 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 07:36:39] 2026-01-11 12:35:41,826 | INFO     | time since job start (3074s) is within the limit (349056.0s)
[2026-01-11 07:36:39] 2026-01-11 12:35:42,478 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 07:36:39] 2026-01-11 12:35:43,327 | INFO     | monitor loop #208: job 0:6966171649 is in state 'finished'
[2026-01-11 07:36:39] 2026-01-11 12:35:43,328 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 07:36:39] 2026-01-11 12:35:43,668 | INFO     | job 6966171649 has state=finished
[2026-01-11 07:36:39] 2026-01-11 12:35:43,669 | INFO     | preparing for final server update for job 6966171649 in state='finished'
[2026-01-11 07:36:39] 2026-01-11 12:35:43,669 | INFO     | this job has now completed (state=finished)
[2026-01-11 07:36:39] 2026-01-11 12:35:43,669 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 07:36:39] 2026-01-11 12:35:43,669 | INFO     | log transfer has been attempted: DONE
[2026-01-11 07:36:39] 2026-01-11 12:35:43,669 | INFO     | job 6966171649 has finished - writing final server update
[2026-01-11 07:36:39] 2026-01-11 12:35:43,669 | INFO     | total number of processed events: 50 (read)
[2026-01-11 07:36:39] 2026-01-11 12:35:43,671 | INFO     | executing command: lscpu
[2026-01-11 07:36:39] 2026-01-11 12:35:43,755 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 07:36:39] 2026-01-11 12:35:43,834 | INFO     | time since job start (3076s) is within the limit (349056.0s)
[2026-01-11 07:36:39] 2026-01-11 12:35:45,836 | INFO     | monitor loop #209: job 0:6966171649 is in state 'finished'
[2026-01-11 07:36:39] 2026-01-11 12:35:45,837 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 07:36:39] 2026-01-11 12:35:45,840 | INFO     | time since job start (3078s) is within the limit (349056.0s)
[2026-01-11 07:36:39] 2026-01-11 12:35:47,847 | INFO     | time since job start (3080s) is within the limit (349056.0s)
[2026-01-11 07:36:39] 2026-01-11 12:35:48,341 | INFO     | monitor loop #210: job 0:6966171649 is in state 'finished'
[2026-01-11 07:36:39] 2026-01-11 12:35:48,342 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 07:36:39] 2026-01-11 12:35:49,854 | INFO     | time since job start (3082s) is within the limit (349056.0s)
[2026-01-11 07:36:39] 2026-01-11 12:35:50,846 | INFO     | monitor loop #211: job 0:6966171649 is in state 'finished'
[2026-01-11 07:36:39] 2026-01-11 12:35:50,847 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 07:36:39] 2026-01-11 12:35:51,862 | INFO     | time since job start (3084s) is within the limit (349056.0s)
[2026-01-11 07:36:39] 2026-01-11 12:35:53,355 | INFO     | monitor loop #212: job 0:6966171649 is in state 'finished'
[2026-01-11 07:36:39] 2026-01-11 12:35:53,356 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 07:36:39] 2026-01-11 12:35:54,545 | INFO     | PID=2577728 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 07:36:39] 2026-01-11 12:35:54,545 | INFO     | .. there are 40 such processes running
[2026-01-11 07:36:39] 2026-01-11 12:35:54,854 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-11 07:36:39] 2026-01-11 12:35:54,865 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.2434921874997
[2026-01-11 07:36:39] 2026-01-11 12:35:54,879 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6966171649/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 07:36:39] 2026-01-11 12:35:54,880 | INFO     | extracted standard info from prmon json
[2026-01-11 07:36:39] 2026-01-11 12:35:54,880 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 07:36:39] 2026-01-11 12:35:54,880 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 07:36:39] 2026-01-11 12:35:54,881 | INFO     | fitting pss+swap vs Time
[2026-01-11 07:36:39] 2026-01-11 12:35:54,881 | INFO     | sum of square deviations: 22945446.119047612
[2026-01-11 07:36:39] 2026-01-11 12:35:54,881 | INFO     | sum of deviations: -5362346578.404762
[2026-01-11 07:36:39] 2026-01-11 12:35:54,881 | INFO     | mean x: 1768133513.5952382
[2026-01-11 07:36:39] 2026-01-11 12:35:54,882 | INFO     | mean y: 2768046.976190476
[2026-01-11 07:36:39] 2026-01-11 12:35:54,882 | INFO     | intersect: 413215248100.67645
[2026-01-11 07:36:39] 2026-01-11 12:35:54,882 | INFO     | chi2: 1.1889935387840065
[2026-01-11 07:36:39] 2026-01-11 12:35:54,882 | INFO     | current memory leak: -233.70 B/s (using 42 data points, chi2=1.19)
[2026-01-11 07:36:39] 2026-01-11 12:35:54,882 | INFO     | could have reported an average CPU frequency of 3800 MHz (5 samples)
[2026-01-11 07:36:39] 2026-01-11 12:35:54,882 | INFO     | ..............................
[2026-01-11 07:36:39] 2026-01-11 12:35:54,882 | INFO     | . Timing measurements:
[2026-01-11 07:36:39] 2026-01-11 12:35:54,882 | INFO     | . get job = 0 s
[2026-01-11 07:36:39] 2026-01-11 12:35:54,882 | INFO     | . initial setup = 2 s
[2026-01-11 07:36:39] 2026-01-11 12:35:54,882 | INFO     | . payload setup = 26 s
[2026-01-11 07:36:39] 2026-01-11 12:35:54,882 | INFO     | . stage-in = 0 s
[2026-01-11 07:36:39] 2026-01-11 12:35:54,882 | INFO     | . payload execution = 3000 s
[2026-01-11 07:36:39] 2026-01-11 12:35:54,882 | INFO     | . stage-out = 1 s
[2026-01-11 07:36:39] 2026-01-11 12:35:54,882 | INFO     | . log creation = 0 s
[2026-01-11 07:36:39] 2026-01-11 12:35:54,882 | INFO     | ..............................
[2026-01-11 07:36:39] 2026-01-11 12:35:54,943 | INFO     | 
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | job summary report
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | --------------------------------------------------
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | PanDA job id: 6966171649
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | task id: 47962010
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | errors: (none)
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | pilot state: finished 
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | transexitcode: 0
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | exeerrorcode: 0
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | exeerrordiag: 
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | exitcode: 0
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | exitmsg: OK
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | cpuconsumptiontime: 9171 s
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | nevents: 50
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | neventsw: 0
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | pid: 2601904
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | pgrp: 2601904
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | corecount: 11
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | event service: False
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | sizes: {0: 2284568, 11: 2284568, 18: 2284858, 22: 2284886, 3030: 2311192, 3032: 2320186, 3035: 2320370, 3047: 2320648}
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | --------------------------------------------------
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | 
[2026-01-11 07:36:39] 2026-01-11 12:35:54,944 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-11 07:36:39] 2026-01-11 12:35:55,020 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,020 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,020 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,020 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,020 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,020 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,020 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,020 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,020 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,020 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,020 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,020 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,021 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,021 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,021 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,021 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,021 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,021 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 07:36:39] 2026-01-11 12:35:55,021 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,021 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 07:36:39] 2026-01-11 12:35:55,021 | INFO     | job 6966171649 has completed (purged errors)
[2026-01-11 07:36:39] 2026-01-11 12:35:55,021 | INFO     | overall cleanup function is called
[2026-01-11 07:36:39] 2026-01-11 12:35:56,064 | INFO     | --- collectZombieJob: --- 10, [2601904]
[2026-01-11 07:36:39] 2026-01-11 12:35:56,066 | INFO     | zombie collector waiting for pid 2601904
[2026-01-11 07:36:39] 2026-01-11 12:35:56,066 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 07:36:39] 2026-01-11 12:35:56,066 | INFO     | collected zombie processes
[2026-01-11 07:36:39] 2026-01-11 12:35:56,066 | INFO     | will attempt to kill all subprocesses of pid=2601904
[2026-01-11 07:36:39] 2026-01-11 12:35:56,983 | INFO     | process IDs to be killed: [2601904] (in reverse order)
[2026-01-11 07:36:39] 2026-01-11 12:35:57,132 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 07:36:39] 2026-01-11 12:35:57,132 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 07:36:39] 2026-01-11 12:35:57,156 | INFO     | did not find any defunct processes belonging to 2601904
[2026-01-11 07:36:39] 2026-01-11 12:35:57,188 | INFO     | did not find any defunct processes belonging to 2601904
[2026-01-11 07:36:39] 2026-01-11 12:35:57,188 | INFO     | ready for new job
[2026-01-11 07:36:39] 2026-01-11 12:35:57,188 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 07:36:39] 2026-01-11 12:35:57,189 | INFO     | ***************************************
[2026-01-11 07:36:39] 2026-01-11 12:35:57,190 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 07:36:39] 2026-01-11 12:35:57,190 | INFO     | ***************************************
[2026-01-11 07:36:39] 2026-01-11 12:35:57,190 | INFO     | 
[2026-01-11 07:36:39] 2026-01-11 12:35:57,198 | INFO     | architecture information:
[2026-01-11 07:36:39] 2026-01-11 12:35:57,208 | INFO     | executing command: cat /etc/os-release
[2026-01-11 07:36:39] 2026-01-11 12:35:57,290 | INFO     | cat /etc/os-release:
[2026-01-11 07:36:39] NAME="CentOS Linux"
[2026-01-11 07:36:39] VERSION="7 (Core)"
[2026-01-11 07:36:39] ID="centos"
[2026-01-11 07:36:39] ID_LIKE="rhel fedora"
[2026-01-11 07:36:39] VERSION_ID="7"
[2026-01-11 07:36:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 07:36:39] ANSI_COLOR="0;31"
[2026-01-11 07:36:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 07:36:39] HOME_URL="https://www.centos.org/"
[2026-01-11 07:36:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 07:36:39] 
[2026-01-11 07:36:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 07:36:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 07:36:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 07:36:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 07:36:39] 
[2026-01-11 07:36:39] 2026-01-11 12:35:57,291 | INFO     | ***************************************
[2026-01-11 07:36:39] 2026-01-11 12:35:57,795 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-11 07:36:39] 2026-01-11 12:35:57,830 | INFO     | sufficient remaining disk space (74725720064 B)
[2026-01-11 07:36:39] 2026-01-11 12:35:57,830 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 07:36:39] 2026-01-11 12:35:57,830 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 07:36:39] 2026-01-11 12:35:57,830 | INFO     | update_server=False
[2026-01-11 07:36:39] 2026-01-11 12:35:57,830 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 07:36:39] 2026-01-11 12:35:57,831 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 07:36:39] 2026-01-11 12:35:57,831 | INFO     | aborting loop
[2026-01-11 07:36:39] 2026-01-11 12:35:57,831 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 07:36:39] 2026-01-11 12:35:57,854 | INFO     | all payload control threads have been joined
[2026-01-11 07:36:39] 2026-01-11 12:35:58,173 | INFO     | all data control threads have been joined
[2026-01-11 07:36:39] 2026-01-11 12:35:58,243 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 07:36:39] 2026-01-11 12:35:58,455 | INFO     | all job control threads have been joined
[2026-01-11 07:36:39] 2026-01-11 12:35:58,836 | INFO     | [job] retrieve thread has finished
[2026-01-11 07:36:39] 2026-01-11 12:35:58,837 | INFO     | [job] job monitor thread has finished
[2026-01-11 07:36:39] 2026-01-11 12:35:58,860 | INFO     | [payload] control thread has finished
[2026-01-11 07:36:39] 2026-01-11 12:35:59,001 | INFO     | [job] validate thread has finished
[2026-01-11 07:36:39] 2026-01-11 12:35:59,179 | INFO     | [data] control thread has finished
[2026-01-11 07:36:39] 2026-01-11 12:35:59,461 | INFO     | [job] control thread has finished
[2026-01-11 07:36:39] 2026-01-11 12:35:59,558 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 07:36:39] 2026-01-11 12:35:59,610 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 07:36:39] 2026-01-11 12:35:59,639 | INFO     | [payload] failed_post thread has finished
[2026-01-11 07:36:39] 2026-01-11 12:35:59,885 | INFO     | [data] copytool_in thread has finished
[2026-01-11 07:36:39] 2026-01-11 12:35:59,961 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 07:36:39] 2026-01-11 12:36:00,104 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 07:36:39] 2026-01-11 12:36:00,250 | INFO     | [data] copytool_out thread has finished
[2026-01-11 07:36:39] 2026-01-11 12:36:00,265 | INFO     | [payload] validate_post thread has finished
[2026-01-11 07:36:39] 2026-01-11 12:36:00,967 | INFO     | [job] queue monitor thread has finished
[2026-01-11 07:36:39] 2026-01-11 12:36:01,839 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 07:36:39] 2026-01-11 12:36:07,907 | INFO     | job.realtimelogging is not enabled
[2026-01-11 07:36:39] 2026-01-11 12:36:08,913 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 07:36:39] 2026-01-11 12:36:27,387 | INFO     | PID=2577728 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 07:36:39] 2026-01-11 12:36:27,387 | INFO     | .. there are 40 such processes running
[2026-01-11 07:36:39] 2026-01-11 12:36:27,388 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 07:36:39] 2026-01-11 12:36:27,388 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 07:36:39] 2026-01-11 12:36:27,388 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 07:36:39] 2026-01-11 12:36:32,756 | INFO     | [monitor] cgroup control has ended
[2026-01-11 07:36:39] 2026-01-11 12:36:33,558 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140579393169216)>', '<ExcThread(monitor, started 140578742318848)>']
[2026-01-11 07:36:39] 2026-01-11 12:36:34,435 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 07:36:39] 2026-01-11 12:36:34,435 | INFO     | [monitor] control thread has ended
[2026-01-11 07:36:39] 2026-01-11 12:36:38,584 | INFO     | all workflow threads have been joined
[2026-01-11 07:36:39] 2026-01-11 12:36:38,585 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 07:36:39] 2026-01-11 12:36:38,585 | INFO     | traces error code: 0
[2026-01-11 07:36:39] 2026-01-11 12:36:38,585 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 07:36:39] 2026-01-11 12:36:38,731 [wrapper] ==== pilot stdout END ====
[2026-01-11 07:36:39] 2026-01-11 12:36:38,734 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 07:36:39] 2026-01-11 12:36:38,743 [wrapper] pilotpid: 2577728
[2026-01-11 07:36:39] 2026-01-11 12:36:38,750 [wrapper] Pilot exit status: 0
[2026-01-11 07:36:39] 2026-01-11 12:36:38,815 [wrapper] pandaids: 6966171649
[2026-01-11 07:36:39] 2026-01-11 12:36:39,016 [wrapper] cleanup supervisor_pilot 2791017 2577729
[2026-01-11 07:36:39] 2026-01-11 12:36:39,020 [wrapper] Test setup, not cleaning
[2026-01-11 07:36:39] 2026-01-11 12:36:39,023 [wrapper] apfmon messages muted
[2026-01-11 07:36:39] 2026-01-11 12:36:39,026 [wrapper] ==== wrapper stdout END ====
[2026-01-11 07:36:39] 2026-01-11 12:36:39,031 [wrapper] ==== wrapper stderr END ====
[2026-01-11 07:36:39]  *** Error codes and diagnostics ***
[2026-01-11 07:36:39]     "exeErrorCode": 0,
[2026-01-11 07:36:39]     "exeErrorDiag": "",
[2026-01-11 07:36:39]     "pilotErrorCode": 0,
[2026-01-11 07:36:39]     "pilotErrorDiag": "",
[2026-01-11 07:36:39]  *** Listing of results directory ***
[2026-01-11 07:36:39] total 434344
[2026-01-11 07:36:39] -rw-r--r--. 1 boincer umatlas    579449 Jan 11 06:17 pilot3.tar.gz
[2026-01-11 07:36:39] -rwx------. 1 boincer umatlas     36322 Jan 11 06:42 runpilot2-wrapper.sh
[2026-01-11 07:36:39] -rw-r--r--. 1 boincer umatlas      5112 Jan 11 06:42 queuedata.json
[2026-01-11 07:36:39] -rw-r--r--. 1 boincer umatlas       100 Jan 11 06:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 07:36:39] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 11 06:43 run_atlas
[2026-01-11 07:36:39] -rw-r--r--. 1 boincer umatlas       105 Jan 11 06:43 job.xml
[2026-01-11 07:36:39] -rw-r--r--. 2 boincer umatlas 390344352 Jan 11 06:43 EVNT.47962006._000079.pool.root.1
[2026-01-11 07:36:39] -rw-r--r--. 2 boincer umatlas     15847 Jan 11 06:43 start_atlas.sh
[2026-01-11 07:36:39] drwxrwx--x. 2 boincer umatlas      4096 Jan 11 06:43 shared
[2026-01-11 07:36:39] -rw-r--r--. 2 boincer umatlas    592610 Jan 11 06:43 input.tar.gz
[2026-01-11 07:36:39] -rw-r--r--. 1 boincer umatlas         0 Jan 11 06:43 boinc_lockfile
[2026-01-11 07:36:39] -rw-r--r--. 1 boincer umatlas      2889 Jan 11 06:43 pandaJob.out
[2026-01-11 07:36:39] -rw-------. 1 boincer umatlas        57 Jan 11 06:43 setup.sh.local
[2026-01-11 07:36:39] -rw-------. 1 boincer umatlas    989548 Jan 11 06:44 agis_schedconf.cvmfs.json
[2026-01-11 07:36:39] -rw-------. 1 boincer umatlas   1516240 Jan 11 06:44 agis_ddmendpoints.agis.ALL.json
[2026-01-11 07:36:39] drwx------. 5 boincer umatlas      4096 Jan 11 06:44 pilot3
[2026-01-11 07:36:39] -rw-r--r--. 1 boincer umatlas       529 Jan 11 07:24 boinc_task_state.xml
[2026-01-11 07:36:39] -rw-r--r--. 1 boincer umatlas      7169 Jan 11 07:30 init_data.xml
[2026-01-11 07:36:39] -rw-------. 1 boincer umatlas  46667738 Jan 11 07:35 HITS.47962010._003066.pool.root.1
[2026-01-11 07:36:39] -rw-------. 1 boincer umatlas      1033 Jan 11 07:35 memory_monitor_summary.json
[2026-01-11 07:36:39] -rw-------. 1 boincer umatlas   1467588 Jan 11 07:35 log.47962010._003066.job.log.tgz.1
[2026-01-11 07:36:39] -rw-------. 1 boincer umatlas      8529 Jan 11 07:35 heartbeat.json
[2026-01-11 07:36:39] -rw-------. 1 boincer umatlas        95 Jan 11 07:36 pilot_heartbeat.json
[2026-01-11 07:36:39] -rw-r--r--. 1 boincer umatlas      8192 Jan 11 07:36 boinc_mmap_file
[2026-01-11 07:36:39] -rw-r--r--. 1 boincer umatlas        26 Jan 11 07:36 wrapper_checkpoint.txt
[2026-01-11 07:36:39] -rw-------. 1 boincer umatlas      4896 Jan 11 07:36 pilotlog.txt
[2026-01-11 07:36:39] -rw-------. 1 boincer umatlas    452601 Jan 11 07:36 log.47962010._003066.job.log.1
[2026-01-11 07:36:39] -rw-------. 1 boincer umatlas       353 Jan 11 07:36 output.list
[2026-01-11 07:36:39] -rw-r--r--. 1 boincer umatlas       620 Jan 11 07:36 runtime_log
[2026-01-11 07:36:39] -rw-------. 1 boincer umatlas   1935360 Jan 11 07:36 result.tar.gz
[2026-01-11 07:36:39] -rw-r--r--. 1 boincer umatlas      9339 Jan 11 07:36 runtime_log.err
[2026-01-11 07:36:39] -rw-------. 1 boincer umatlas       650 Jan 11 07:36 dueLDmW18y8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDme2mKDm4HFFVn.diag
[2026-01-11 07:36:39] -rw-r--r--. 1 boincer umatlas     22495 Jan 11 07:36 stderr.txt
[2026-01-11 07:36:39] HITS file was successfully produced:
[2026-01-11 07:36:39] -rw-------. 1 boincer umatlas 46667738 Jan 11 07:35 shared/HITS.pool.root.1
[2026-01-11 07:36:39]  *** Contents of shared directory: ***
[2026-01-11 07:36:39] total 429264
[2026-01-11 07:36:39] -rw-r--r--. 2 boincer umatlas 390344352 Jan 11 06:43 ATLAS.root_0
[2026-01-11 07:36:39] -rw-r--r--. 2 boincer umatlas     15847 Jan 11 06:43 start_atlas.sh
[2026-01-11 07:36:39] -rw-r--r--. 2 boincer umatlas    592610 Jan 11 06:43 input.tar.gz
[2026-01-11 07:36:39] -rw-------. 1 boincer umatlas  46667738 Jan 11 07:35 HITS.pool.root.1
[2026-01-11 07:36:39] -rw-------. 1 boincer umatlas   1935360 Jan 11 07:36 result.tar.gz
07:36:41 (2567186): run_atlas exited; CPU time 9172.076560
07:36:41 (2567186): called boinc_finish(0)

</stderr_txt>
]]>

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