Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:43:32 (1215): wrapper (7.7.26015): starting
06:43:32 (1215): wrapper: running run_atlas (--nthreads 8)
[2026-01-11 06:43:32] Arguments: --nthreads 8
[2026-01-11 06:43:32] Threads: 8
[2026-01-11 06:43:32] Checking for CVMFS
[2026-01-11 06:43:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 06:43:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 06:43:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 06:43:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 06:43:33] 2.11.2.0 2878 123692 83824 155015 0 1 15765525 20275200 1 130560 0 27225071 99.798 7581041 33626 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-11 06:43:33] CVMFS is ok
[2026-01-11 06:43:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 06:43:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 06:43:33] Further information can be found at the LHC@home message board.
[2026-01-11 06:43:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 06:43:33] Checking for apptainer binary...
[2026-01-11 06:43:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 06:43:33] Running /usr/bin/apptainer --version
[2026-01-11 06:43:33] apptainer version 1.3.2-1.el7
[2026-01-11 06:43:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 06:43:35] c-204-27.aglt2.org
[2026-01-11 06:43:35] apptainer works
[2026-01-11 06:43:35] Set ATHENA_PROC_NUMBER=8
[2026-01-11 06:43:35] Set ATHENA_CORE_NUMBER=8
[2026-01-11 06:43:35] Starting ATLAS job with PandaID=6966171650
[2026-01-11 06:43:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 07:41:06]  *** The last 200 lines of the pilot log: ***
[2026-01-11 07:41:06]  replicas=None
[2026-01-11 07:41:06]  scope=mc16_13TeV
[2026-01-11 07:41:06]  status=None
[2026-01-11 07:41:06]  status_code=0
[2026-01-11 07:41:06]  storage_token=
[2026-01-11 07:41:06]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6966171650/log.47962010._003067.job.log.tgz.1
[2026-01-11 07:41:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/e6/e2/log.47962010._003067.job.log.tgz.1
[2026-01-11 07:41:06]  workdir=None
[2026-01-11 07:41:06] ]
[2026-01-11 07:41:06] 2026-01-11 12:39:55,123 | INFO     | transferring file log.47962010._003067.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6966171650/log.47962010._003067.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-11 07:41:06] 2026-01-11 12:39:55,123 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6966171650/log.47962010._003067.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._003067.job
[2026-01-11 07:41:06] 2026-01-11 12:39:55,148 | INFO     | adding to output.list: log.47962010._003067.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/e6/e2/log.47962010._003067.job.log.tgz.
[2026-01-11 07:41:06] 2026-01-11 12:39:55,149 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 07:41:06] 2026-01-11 12:39:55,149 | INFO     | summary of transferred files:
[2026-01-11 07:41:06] 2026-01-11 12:39:55,149 | INFO     |  -- lfn=log.47962010._003067.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 07:41:06] 2026-01-11 12:39:55,150 | INFO     | stage-out finished correctly
[2026-01-11 07:41:06] 2026-01-11 12:39:55,280 | INFO     | time since job start (3360s) is within the limit (349056.0s)
[2026-01-11 07:41:06] 2026-01-11 12:39:56,070 | INFO     | monitor loop #256: job 0:6966171650 is in state 'finished'
[2026-01-11 07:41:06] 2026-01-11 12:39:56,070 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 07:41:06] 2026-01-11 12:39:56,567 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 07:41:06] 2026-01-11 12:39:57,286 | INFO     | time since job start (3362s) is within the limit (349056.0s)
[2026-01-11 07:41:06] 2026-01-11 12:39:58,483 | INFO     | job 6966171650 has state=finished
[2026-01-11 07:41:06] 2026-01-11 12:39:58,484 | INFO     | preparing for final server update for job 6966171650 in state='finished'
[2026-01-11 07:41:06] 2026-01-11 12:39:58,484 | INFO     | this job has now completed (state=finished)
[2026-01-11 07:41:06] 2026-01-11 12:39:58,485 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 07:41:06] 2026-01-11 12:39:58,485 | INFO     | log transfer has been attempted: DONE
[2026-01-11 07:41:06] 2026-01-11 12:39:58,485 | INFO     | job 6966171650 has finished - writing final server update
[2026-01-11 07:41:06] 2026-01-11 12:39:58,485 | INFO     | total number of processed events: 50 (read)
[2026-01-11 07:41:06] 2026-01-11 12:39:58,487 | INFO     | executing command: lscpu
[2026-01-11 07:41:06] 2026-01-11 12:39:58,516 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 07:41:06] 2026-01-11 12:39:58,573 | INFO     | monitor loop #257: job 0:6966171650 is in state 'finished'
[2026-01-11 07:41:06] 2026-01-11 12:39:58,574 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 07:41:06] 2026-01-11 12:39:59,292 | INFO     | time since job start (3364s) is within the limit (349056.0s)
[2026-01-11 07:41:06] 2026-01-11 12:40:00,415 | INFO     | PID=5401 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-11 07:41:06] 2026-01-11 12:40:01,077 | INFO     | monitor loop #258: job 0:6966171650 is in state 'finished'
[2026-01-11 07:41:06] 2026-01-11 12:40:01,078 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 07:41:06] 2026-01-11 12:40:01,416 | INFO     | time since job start (3366s) is within the limit (349056.0s)
[2026-01-11 07:41:06] 2026-01-11 12:40:03,421 | INFO     | time since job start (3368s) is within the limit (349056.0s)
[2026-01-11 07:41:06] 2026-01-11 12:40:03,581 | INFO     | monitor loop #259: job 0:6966171650 is in state 'finished'
[2026-01-11 07:41:06] 2026-01-11 12:40:03,581 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 07:41:06] 2026-01-11 12:40:04,282 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-11 07:41:06] 2026-01-11 12:40:04,285 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2026-01-11 07:41:06] 2026-01-11 12:40:04,287 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6966171650/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 07:41:06] 2026-01-11 12:40:04,288 | INFO     | extracted standard info from prmon json
[2026-01-11 07:41:06] 2026-01-11 12:40:04,288 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 07:41:06] 2026-01-11 12:40:04,288 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 07:41:06] 2026-01-11 12:40:04,291 | INFO     | fitting pss+swap vs Time
[2026-01-11 07:41:06] 2026-01-11 12:40:04,291 | INFO     | sum of square deviations: 34277070.97916672
[2026-01-11 07:41:06] 2026-01-11 12:40:04,292 | INFO     | sum of deviations: -5448650992.875001
[2026-01-11 07:41:06] 2026-01-11 12:40:04,292 | INFO     | mean x: 1768133606.9791667
[2026-01-11 07:41:06] 2026-01-11 12:40:04,292 | INFO     | mean y: 2744379.125
[2026-01-11 07:41:06] 2026-01-11 12:40:04,292 | INFO     | intersect: 281063601039.1971
[2026-01-11 07:41:06] 2026-01-11 12:40:04,292 | INFO     | chi2: 0.42414651315101254
[2026-01-11 07:41:06] 2026-01-11 12:40:04,293 | INFO     | current memory leak: -158.96 B/s (using 48 data points, chi2=0.42)
[2026-01-11 07:41:06] 2026-01-11 12:40:04,293 | INFO     | could have reported an average CPU frequency of 1838 MHz (5 samples)
[2026-01-11 07:41:06] 2026-01-11 12:40:04,293 | INFO     | ..............................
[2026-01-11 07:41:06] 2026-01-11 12:40:04,294 | INFO     | . Timing measurements:
[2026-01-11 07:41:06] 2026-01-11 12:40:04,294 | INFO     | . get job = 0 s
[2026-01-11 07:41:06] 2026-01-11 12:40:04,294 | INFO     | . initial setup = 2 s
[2026-01-11 07:41:06] 2026-01-11 12:40:04,294 | INFO     | . payload setup = 9 s
[2026-01-11 07:41:06] 2026-01-11 12:40:04,294 | INFO     | . stage-in = 0 s
[2026-01-11 07:41:06] 2026-01-11 12:40:04,294 | INFO     | . payload execution = 3327 s
[2026-01-11 07:41:06] 2026-01-11 12:40:04,295 | INFO     | . stage-out = 0 s
[2026-01-11 07:41:06] 2026-01-11 12:40:04,295 | INFO     | . log creation = 0 s
[2026-01-11 07:41:06] 2026-01-11 12:40:04,295 | INFO     | ..............................
[2026-01-11 07:41:06] 2026-01-11 12:40:04,624 | INFO     | 
[2026-01-11 07:41:06] 2026-01-11 12:40:04,624 | INFO     | job summary report
[2026-01-11 07:41:06] 2026-01-11 12:40:04,624 | INFO     | --------------------------------------------------
[2026-01-11 07:41:06] 2026-01-11 12:40:04,625 | INFO     | PanDA job id: 6966171650
[2026-01-11 07:41:06] 2026-01-11 12:40:04,625 | INFO     | task id: 47962010
[2026-01-11 07:41:06] 2026-01-11 12:40:04,625 | INFO     | errors: (none)
[2026-01-11 07:41:06] 2026-01-11 12:40:04,625 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 07:41:06] 2026-01-11 12:40:04,625 | INFO     | pilot state: finished 
[2026-01-11 07:41:06] 2026-01-11 12:40:04,626 | INFO     | transexitcode: 0
[2026-01-11 07:41:06] 2026-01-11 12:40:04,626 | INFO     | exeerrorcode: 0
[2026-01-11 07:41:06] 2026-01-11 12:40:04,626 | INFO     | exeerrordiag: 
[2026-01-11 07:41:06] 2026-01-11 12:40:04,626 | INFO     | exitcode: 0
[2026-01-11 07:41:06] 2026-01-11 12:40:04,626 | INFO     | exitmsg: OK
[2026-01-11 07:41:06] 2026-01-11 12:40:04,626 | INFO     | cpuconsumptiontime: 21937 s
[2026-01-11 07:41:06] 2026-01-11 12:40:04,627 | INFO     | nevents: 50
[2026-01-11 07:41:06] 2026-01-11 12:40:04,627 | INFO     | neventsw: 0
[2026-01-11 07:41:06] 2026-01-11 12:40:04,627 | INFO     | pid: 11829
[2026-01-11 07:41:06] 2026-01-11 12:40:04,627 | INFO     | pgrp: 11829
[2026-01-11 07:41:06] 2026-01-11 12:40:04,627 | INFO     | corecount: 8
[2026-01-11 07:41:06] 2026-01-11 12:40:04,628 | INFO     | event service: False
[2026-01-11 07:41:06] 2026-01-11 12:40:04,628 | INFO     | sizes: {0: 2284568, 6: 2284830, 11: 2284858, 3341: 2311246, 3342: 2320240, 3344: 2320296, 3351: 2320702}
[2026-01-11 07:41:06] 2026-01-11 12:40:04,628 | INFO     | --------------------------------------------------
[2026-01-11 07:41:06] 2026-01-11 12:40:04,628 | INFO     | 
[2026-01-11 07:41:06] 2026-01-11 12:40:04,628 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-11 07:41:06] 2026-01-11 12:40:04,653 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,653 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,653 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,654 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,654 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,654 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,654 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,654 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,655 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,655 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,655 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,655 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,655 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,656 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,656 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,656 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,656 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,656 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 07:41:06] 2026-01-11 12:40:04,657 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,657 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 07:41:06] 2026-01-11 12:40:04,657 | INFO     | job 6966171650 has completed (purged errors)
[2026-01-11 07:41:06] 2026-01-11 12:40:04,657 | INFO     | overall cleanup function is called
[2026-01-11 07:41:06] 2026-01-11 12:40:05,673 | INFO     | --- collectZombieJob: --- 10, [11829]
[2026-01-11 07:41:06] 2026-01-11 12:40:05,673 | INFO     | zombie collector waiting for pid 11829
[2026-01-11 07:41:06] 2026-01-11 12:40:05,673 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 07:41:06] 2026-01-11 12:40:05,674 | INFO     | collected zombie processes
[2026-01-11 07:41:06] 2026-01-11 12:40:05,674 | INFO     | will attempt to kill all subprocesses of pid=11829
[2026-01-11 07:41:06] 2026-01-11 12:40:05,770 | INFO     | process IDs to be killed: [11829] (in reverse order)
[2026-01-11 07:41:06] 2026-01-11 12:40:05,833 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 07:41:06] 2026-01-11 12:40:05,834 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 07:41:06] 2026-01-11 12:40:05,840 | INFO     | did not find any defunct processes belonging to 11829
[2026-01-11 07:41:06] 2026-01-11 12:40:05,844 | INFO     | did not find any defunct processes belonging to 11829
[2026-01-11 07:41:06] 2026-01-11 12:40:05,844 | INFO     | ready for new job
[2026-01-11 07:41:06] 2026-01-11 12:40:05,845 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 07:41:06] 2026-01-11 12:40:05,846 | INFO     | ***************************************
[2026-01-11 07:41:06] 2026-01-11 12:40:05,846 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 07:41:06] 2026-01-11 12:40:05,846 | INFO     | ***************************************
[2026-01-11 07:41:06] 2026-01-11 12:40:05,847 | INFO     | 
[2026-01-11 07:41:06] 2026-01-11 12:40:05,847 | INFO     | architecture information:
[2026-01-11 07:41:06] 2026-01-11 12:40:05,848 | INFO     | executing command: cat /etc/os-release
[2026-01-11 07:41:06] 2026-01-11 12:40:05,867 | INFO     | cat /etc/os-release:
[2026-01-11 07:41:06] NAME="CentOS Linux"
[2026-01-11 07:41:06] VERSION="7 (Core)"
[2026-01-11 07:41:06] ID="centos"
[2026-01-11 07:41:06] ID_LIKE="rhel fedora"
[2026-01-11 07:41:06] VERSION_ID="7"
[2026-01-11 07:41:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 07:41:06] ANSI_COLOR="0;31"
[2026-01-11 07:41:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 07:41:06] HOME_URL="https://www.centos.org/"
[2026-01-11 07:41:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 07:41:06] 
[2026-01-11 07:41:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 07:41:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 07:41:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 07:41:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 07:41:06] 
[2026-01-11 07:41:06] 2026-01-11 12:40:05,868 | INFO     | ***************************************
[2026-01-11 07:41:06] 2026-01-11 12:40:06,371 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-11 07:41:06] 2026-01-11 12:40:06,392 | INFO     | sufficient remaining disk space (18346934272 B)
[2026-01-11 07:41:06] 2026-01-11 12:40:06,392 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 07:41:06] 2026-01-11 12:40:06,392 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 07:41:06] 2026-01-11 12:40:06,392 | INFO     | update_server=False
[2026-01-11 07:41:06] 2026-01-11 12:40:06,393 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 07:41:06] 2026-01-11 12:40:06,393 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 07:41:06] 2026-01-11 12:40:06,466 | INFO     | all payload control threads have been joined
[2026-01-11 07:41:06] 2026-01-11 12:40:07,089 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 07:41:06] 2026-01-11 12:40:07,090 | INFO     | aborting loop
[2026-01-11 07:41:06] 2026-01-11 12:40:07,164 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 07:41:06] 2026-01-11 12:40:07,206 | INFO     | all data control threads have been joined
[2026-01-11 07:41:06] 2026-01-11 12:40:07,246 | INFO     | all job control threads have been joined
[2026-01-11 07:41:06] 2026-01-11 12:40:07,398 | INFO     | [job] retrieve thread has finished
[2026-01-11 07:41:06] 2026-01-11 12:40:07,472 | INFO     | [payload] control thread has finished
[2026-01-11 07:41:06] 2026-01-11 12:40:07,546 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 07:41:06] 2026-01-11 12:40:07,625 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 07:41:06] 2026-01-11 12:40:07,625 | INFO     | [data] copytool_in thread has finished
[2026-01-11 07:41:06] 2026-01-11 12:40:07,869 | INFO     | [payload] validate_post thread has finished
[2026-01-11 07:41:06] 2026-01-11 12:40:08,024 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 07:41:06] 2026-01-11 12:40:08,095 | INFO     | [job] job monitor thread has finished
[2026-01-11 07:41:06] 2026-01-11 12:40:08,211 | INFO     | [data] control thread has finished
[2026-01-11 07:41:06] 2026-01-11 12:40:08,252 | INFO     | [job] control thread has finished
[2026-01-11 07:41:06] 2026-01-11 12:40:08,397 | INFO     | [data] copytool_out thread has finished
[2026-01-11 07:41:06] 2026-01-11 12:40:08,841 | INFO     | [job] validate thread has finished
[2026-01-11 07:41:06] 2026-01-11 12:40:08,860 | INFO     | [payload] failed_post thread has finished
[2026-01-11 07:41:06] 2026-01-11 12:40:09,397 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 07:41:06] 2026-01-11 12:40:10,402 | INFO     | [job] queue monitor thread has finished
[2026-01-11 07:41:06] 2026-01-11 12:40:11,170 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 07:41:06] 2026-01-11 12:40:16,883 | INFO     | job.realtimelogging is not enabled
[2026-01-11 07:41:06] 2026-01-11 12:40:17,889 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 07:41:06] 2026-01-11 12:40:36,642 | INFO     | PID=5401 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-11 07:41:06] 2026-01-11 12:40:36,643 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 07:41:06] 2026-01-11 12:40:36,643 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 07:41:06] 2026-01-11 12:40:36,643 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 07:41:06] 2026-01-11 12:41:00,130 | INFO     | [monitor] cgroup control has ended
[2026-01-11 07:41:06] 2026-01-11 12:41:01,320 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140607763781440)>', '<ExcThread(monitor, started 140607330694912)>']
[2026-01-11 07:41:06] 2026-01-11 12:41:01,757 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 07:41:06] 2026-01-11 12:41:01,757 | INFO     | [monitor] control thread has ended
[2026-01-11 07:41:06] 2026-01-11 12:41:06,345 | INFO     | all workflow threads have been joined
[2026-01-11 07:41:06] 2026-01-11 12:41:06,346 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 07:41:06] 2026-01-11 12:41:06,346 | INFO     | traces error code: 0
[2026-01-11 07:41:06] 2026-01-11 12:41:06,346 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 07:41:06] 2026-01-11 12:41:06,451 [wrapper] ==== pilot stdout END ====
[2026-01-11 07:41:06] 2026-01-11 12:41:06,456 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 07:41:06] 2026-01-11 12:41:06,461 [wrapper] pilotpid: 5401
[2026-01-11 07:41:06] 2026-01-11 12:41:06,466 [wrapper] Pilot exit status: 0
[2026-01-11 07:41:06] 2026-01-11 12:41:06,483 [wrapper] pandaids: 6966171650
[2026-01-11 07:41:06] 2026-01-11 12:41:06,532 [wrapper] cleanup supervisor_pilot  4963 5402
[2026-01-11 07:41:06] 2026-01-11 12:41:06,537 [wrapper] Test setup, not cleaning
[2026-01-11 07:41:06] 2026-01-11 12:41:06,542 [wrapper] apfmon messages muted
[2026-01-11 07:41:06] 2026-01-11 12:41:06,547 [wrapper] ==== wrapper stdout END ====
[2026-01-11 07:41:06] 2026-01-11 12:41:06,552 [wrapper] ==== wrapper stderr END ====
[2026-01-11 07:41:06]  *** Error codes and diagnostics ***
[2026-01-11 07:41:06]     "exeErrorCode": 0,
[2026-01-11 07:41:06]     "exeErrorDiag": "",
[2026-01-11 07:41:06]     "pilotErrorCode": 0,
[2026-01-11 07:41:06]     "pilotErrorDiag": "",
[2026-01-11 07:41:06]  *** Listing of results directory ***
[2026-01-11 07:41:06] total 429388
[2026-01-11 07:41:06] -rw-r--r-- 1 boincer umatlas    579449 Jan 11 06:17 pilot3.tar.gz
[2026-01-11 07:41:06] -rwx------ 1 boincer umatlas     36322 Jan 11 06:42 runpilot2-wrapper.sh
[2026-01-11 07:41:06] -rw-r--r-- 1 boincer umatlas      5112 Jan 11 06:42 queuedata.json
[2026-01-11 07:41:06] -rw-r--r-- 1 boincer umatlas       100 Jan 11 06:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 07:41:06] -rwxr-xr-x 1 boincer umatlas      7986 Jan 11 06:43 run_atlas
[2026-01-11 07:41:06] -rw-r--r-- 1 boincer umatlas       105 Jan 11 06:43 job.xml
[2026-01-11 07:41:06] -rw-r--r-- 2 boincer umatlas 390344352 Jan 11 06:43 EVNT.47962006._000079.pool.root.1
[2026-01-11 07:41:06] -rw-r--r-- 2 boincer umatlas     15847 Jan 11 06:43 start_atlas.sh
[2026-01-11 07:41:06] drwxrwx--x 2 boincer umatlas      4096 Jan 11 06:43 shared
[2026-01-11 07:41:06] -rw-r--r-- 2 boincer umatlas    592618 Jan 11 06:43 input.tar.gz
[2026-01-11 07:41:06] -rw-r--r-- 1 boincer umatlas         0 Jan 11 06:43 boinc_lockfile
[2026-01-11 07:41:06] -rw-r--r-- 1 boincer umatlas      2889 Jan 11 06:43 pandaJob.out
[2026-01-11 07:41:06] -rw------- 1 boincer umatlas        57 Jan 11 06:43 setup.sh.local
[2026-01-11 07:41:06] -rw------- 1 boincer umatlas    989548 Jan 11 06:43 agis_schedconf.cvmfs.json
[2026-01-11 07:41:06] -rw------- 1 boincer umatlas   1516240 Jan 11 06:43 agis_ddmendpoints.agis.ALL.json
[2026-01-11 07:41:06] drwx------ 5 boincer umatlas      4096 Jan 11 06:43 pilot3
[2026-01-11 07:41:06] -rw-r--r-- 1 boincer umatlas       529 Jan 11 07:30 boinc_task_state.xml
[2026-01-11 07:41:06] -rw-r--r-- 1 boincer umatlas      5910 Jan 11 07:36 init_data.xml
[2026-01-11 07:41:06] -rw------- 1 boincer umatlas  42008751 Jan 11 07:39 HITS.47962010._003067.pool.root.1
[2026-01-11 07:41:06] -rw------- 1 boincer umatlas      1050 Jan 11 07:39 memory_monitor_summary.json
[2026-01-11 07:41:06] -rw------- 1 boincer umatlas   1194034 Jan 11 07:39 log.47962010._003067.job.log.tgz.1
[2026-01-11 07:41:06] -rw------- 1 boincer umatlas      8613 Jan 11 07:40 heartbeat.json
[2026-01-11 07:41:06] -rw------- 1 boincer umatlas        95 Jan 11 07:40 pilot_heartbeat.json
[2026-01-11 07:41:06] -rw-r--r-- 1 boincer umatlas        27 Jan 11 07:40 wrapper_checkpoint.txt
[2026-01-11 07:41:06] -rw-r--r-- 1 boincer umatlas      8192 Jan 11 07:40 boinc_mmap_file
[2026-01-11 07:41:06] -rw------- 1 boincer umatlas      4817 Jan 11 07:41 pilotlog.txt
[2026-01-11 07:41:06] -rw------- 1 boincer umatlas    513930 Jan 11 07:41 log.47962010._003067.job.log.1
[2026-01-11 07:41:06] -rw------- 1 boincer umatlas       353 Jan 11 07:41 output.list
[2026-01-11 07:41:06] -rw-r--r-- 1 boincer umatlas       620 Jan 11 07:41 runtime_log
[2026-01-11 07:41:06] -rw------- 1 boincer umatlas   1730560 Jan 11 07:41 result.tar.gz
[2026-01-11 07:41:06] -rw------- 1 boincer umatlas       659 Jan 11 07:41 tYgLDmW18y8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmf2mKDmgDAzCo.diag
[2026-01-11 07:41:06] -rw-r--r-- 1 boincer umatlas      9342 Jan 11 07:41 runtime_log.err
[2026-01-11 07:41:06] -rw-r--r-- 1 boincer umatlas     22011 Jan 11 07:41 stderr.txt
[2026-01-11 07:41:06] HITS file was successfully produced:
[2026-01-11 07:41:06] -rw------- 1 boincer umatlas 42008751 Jan 11 07:39 shared/HITS.pool.root.1
[2026-01-11 07:41:06]  *** Contents of shared directory: ***
[2026-01-11 07:41:06] total 424516
[2026-01-11 07:41:06] -rw-r--r-- 2 boincer umatlas 390344352 Jan 11 06:43 ATLAS.root_0
[2026-01-11 07:41:06] -rw-r--r-- 2 boincer umatlas     15847 Jan 11 06:43 start_atlas.sh
[2026-01-11 07:41:06] -rw-r--r-- 2 boincer umatlas    592618 Jan 11 06:43 input.tar.gz
[2026-01-11 07:41:06] -rw------- 1 boincer umatlas  42008751 Jan 11 07:39 HITS.pool.root.1
[2026-01-11 07:41:06] -rw------- 1 boincer umatlas   1730560 Jan 11 07:41 result.tar.gz
07:41:08 (1215): run_atlas exited; CPU time 21769.261592
07:41:08 (1215): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN