Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:02:29 (27842): wrapper (7.7.26015): starting
05:02:29 (27842): wrapper: running run_atlas (--nthreads 8)
[2026-01-11 05:02:29] Arguments: --nthreads 8
[2026-01-11 05:02:29] Threads: 8
[2026-01-11 05:02:29] Checking for CVMFS
[2026-01-11 05:02:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 05:02:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 05:02:30] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 05:02:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 05:02:30] 2.11.2.0 6491 75041 120536 155011 1 1 12296949 18432000 1 130560 0 45663630 99.991 2483568 34369 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-11 05:02:30] CVMFS is ok
[2026-01-11 05:02:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 05:02:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 05:02:30] Further information can be found at the LHC@home message board.
[2026-01-11 05:02:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 05:02:30] Checking for apptainer binary...
[2026-01-11 05:02:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 05:02:30] Running /usr/bin/apptainer --version
[2026-01-11 05:02:30] apptainer version 1.3.2-1.el7
[2026-01-11 05:02:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 05:02:31] c-206-29.aglt2.org
[2026-01-11 05:02:31] apptainer works
[2026-01-11 05:02:31] Set ATHENA_PROC_NUMBER=8
[2026-01-11 05:02:31] Set ATHENA_CORE_NUMBER=8
[2026-01-11 05:02:31] Starting ATLAS job with PandaID=6966140777
[2026-01-11 05:02:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 05:55:12]  *** The last 200 lines of the pilot log: ***
[2026-01-11 05:55:12]  mtime=0
[2026-01-11 05:55:12]  protocol_id=None
[2026-01-11 05:55:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-11 05:55:12]  replicas=None
[2026-01-11 05:55:12]  scope=mc16_13TeV
[2026-01-11 05:55:12]  status=None
[2026-01-11 05:55:12]  status_code=0
[2026-01-11 05:55:12]  storage_token=
[2026-01-11 05:55:12]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6966140777/log.47962010._003006.job.log.tgz.1
[2026-01-11 05:55:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/53/80/log.47962010._003006.job.log.tgz.1
[2026-01-11 05:55:12]  workdir=None
[2026-01-11 05:55:12] ]
[2026-01-11 05:55:12] 2026-01-11 10:54:32,068 | INFO     | transferring file log.47962010._003006.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6966140777/log.47962010._003006.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-11 05:55:12] 2026-01-11 10:54:32,068 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6966140777/log.47962010._003006.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._003006.job
[2026-01-11 05:55:12] 2026-01-11 10:54:32,088 | INFO     | adding to output.list: log.47962010._003006.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/53/80/log.47962010._003006.job.log.tgz.
[2026-01-11 05:55:12] 2026-01-11 10:54:32,089 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 05:55:12] 2026-01-11 10:54:32,089 | INFO     | summary of transferred files:
[2026-01-11 05:55:12] 2026-01-11 10:54:32,089 | INFO     |  -- lfn=log.47962010._003006.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 05:55:12] 2026-01-11 10:54:32,090 | INFO     | stage-out finished correctly
[2026-01-11 05:55:12] 2026-01-11 10:54:32,172 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 05:55:12] 2026-01-11 10:54:32,468 | INFO     | monitor loop #239: job 0:6966140777 is in state 'finished'
[2026-01-11 05:55:12] 2026-01-11 10:54:32,468 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 05:55:12] 2026-01-11 10:54:32,526 | INFO     | time since job start (3105s) is within the limit (349056.0s)
[2026-01-11 05:55:12] 2026-01-11 10:54:33,648 | INFO     | PID=31893 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-11 05:55:12] 2026-01-11 10:54:33,701 | INFO     | job 6966140777 has state=finished
[2026-01-11 05:55:12] 2026-01-11 10:54:33,702 | INFO     | preparing for final server update for job 6966140777 in state='finished'
[2026-01-11 05:55:12] 2026-01-11 10:54:33,702 | INFO     | this job has now completed (state=finished)
[2026-01-11 05:55:12] 2026-01-11 10:54:33,702 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 05:55:12] 2026-01-11 10:54:33,702 | INFO     | log transfer has been attempted: DONE
[2026-01-11 05:55:12] 2026-01-11 10:54:33,703 | INFO     | job 6966140777 has finished - writing final server update
[2026-01-11 05:55:12] 2026-01-11 10:54:33,703 | INFO     | total number of processed events: 50 (read)
[2026-01-11 05:55:12] 2026-01-11 10:54:33,710 | INFO     | executing command: lscpu
[2026-01-11 05:55:12] 2026-01-11 10:54:33,737 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 05:55:12] 2026-01-11 10:54:34,649 | INFO     | time since job start (3107s) is within the limit (349056.0s)
[2026-01-11 05:55:12] 2026-01-11 10:54:34,972 | INFO     | monitor loop #240: job 0:6966140777 is in state 'finished'
[2026-01-11 05:55:12] 2026-01-11 10:54:34,972 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 05:55:12] 2026-01-11 10:54:36,655 | INFO     | time since job start (3109s) is within the limit (349056.0s)
[2026-01-11 05:55:12] 2026-01-11 10:54:37,475 | INFO     | monitor loop #241: job 0:6966140777 is in state 'finished'
[2026-01-11 05:55:12] 2026-01-11 10:54:37,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 05:55:12] 2026-01-11 10:54:38,660 | INFO     | time since job start (3111s) is within the limit (349056.0s)
[2026-01-11 05:55:12] 2026-01-11 10:54:38,896 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-11 05:55:12] 2026-01-11 10:54:38,900 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1668.0833333333333
[2026-01-11 05:55:12] 2026-01-11 10:54:38,903 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6966140777/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 05:55:12] 2026-01-11 10:54:38,903 | INFO     | extracted standard info from prmon json
[2026-01-11 05:55:12] 2026-01-11 10:54:38,904 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 05:55:12] 2026-01-11 10:54:38,904 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 05:55:12] 2026-01-11 10:54:38,905 | INFO     | fitting pss+swap vs Time
[2026-01-11 05:55:12] 2026-01-11 10:54:38,905 | INFO     | sum of square deviations: 26400495.0
[2026-01-11 05:55:12] 2026-01-11 10:54:38,905 | INFO     | sum of deviations: -843370902.4999998
[2026-01-11 05:55:12] 2026-01-11 10:54:38,906 | INFO     | mean x: 1768127411.5
[2026-01-11 05:55:12] 2026-01-11 10:54:38,906 | INFO     | mean y: 2507528.522727273
[2026-01-11 05:55:12] 2026-01-11 10:54:38,906 | INFO     | intersect: 56485812510.93853
[2026-01-11 05:55:12] 2026-01-11 10:54:38,906 | INFO     | chi2: 0.19790125356024552
[2026-01-11 05:55:12] 2026-01-11 10:54:38,906 | INFO     | current memory leak: -31.95 B/s (using 44 data points, chi2=0.20)
[2026-01-11 05:55:12] 2026-01-11 10:54:38,906 | INFO     | could have reported an average CPU frequency of 1757 MHz (5 samples)
[2026-01-11 05:55:12] 2026-01-11 10:54:38,907 | INFO     | ..............................
[2026-01-11 05:55:12] 2026-01-11 10:54:38,907 | INFO     | . Timing measurements:
[2026-01-11 05:55:12] 2026-01-11 10:54:38,907 | INFO     | . get job = 0 s
[2026-01-11 05:55:12] 2026-01-11 10:54:38,907 | INFO     | . initial setup = 2 s
[2026-01-11 05:55:12] 2026-01-11 10:54:38,907 | INFO     | . payload setup = 7 s
[2026-01-11 05:55:12] 2026-01-11 10:54:38,907 | INFO     | . stage-in = 0 s
[2026-01-11 05:55:12] 2026-01-11 10:54:38,907 | INFO     | . payload execution = 3077 s
[2026-01-11 05:55:12] 2026-01-11 10:54:38,907 | INFO     | . stage-out = 0 s
[2026-01-11 05:55:12] 2026-01-11 10:54:38,907 | INFO     | . log creation = 0 s
[2026-01-11 05:55:12] 2026-01-11 10:54:38,907 | INFO     | ..............................
[2026-01-11 05:55:12] 2026-01-11 10:54:39,044 | INFO     | 
[2026-01-11 05:55:12] 2026-01-11 10:54:39,044 | INFO     | job summary report
[2026-01-11 05:55:12] 2026-01-11 10:54:39,045 | INFO     | --------------------------------------------------
[2026-01-11 05:55:12] 2026-01-11 10:54:39,045 | INFO     | PanDA job id: 6966140777
[2026-01-11 05:55:12] 2026-01-11 10:54:39,045 | INFO     | task id: 47962010
[2026-01-11 05:55:12] 2026-01-11 10:54:39,045 | INFO     | errors: (none)
[2026-01-11 05:55:12] 2026-01-11 10:54:39,045 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 05:55:12] 2026-01-11 10:54:39,045 | INFO     | pilot state: finished 
[2026-01-11 05:55:12] 2026-01-11 10:54:39,046 | INFO     | transexitcode: 0
[2026-01-11 05:55:12] 2026-01-11 10:54:39,046 | INFO     | exeerrorcode: 0
[2026-01-11 05:55:12] 2026-01-11 10:54:39,046 | INFO     | exeerrordiag: 
[2026-01-11 05:55:12] 2026-01-11 10:54:39,046 | INFO     | exitcode: 0
[2026-01-11 05:55:12] 2026-01-11 10:54:39,046 | INFO     | exitmsg: OK
[2026-01-11 05:55:12] 2026-01-11 10:54:39,046 | INFO     | cpuconsumptiontime: 21238 s
[2026-01-11 05:55:12] 2026-01-11 10:54:39,047 | INFO     | nevents: 50
[2026-01-11 05:55:12] 2026-01-11 10:54:39,047 | INFO     | neventsw: 0
[2026-01-11 05:55:12] 2026-01-11 10:54:39,047 | INFO     | pid: 6090
[2026-01-11 05:55:12] 2026-01-11 10:54:39,047 | INFO     | pgrp: 6090
[2026-01-11 05:55:12] 2026-01-11 10:54:39,047 | INFO     | corecount: 8
[2026-01-11 05:55:12] 2026-01-11 10:54:39,047 | INFO     | event service: False
[2026-01-11 05:55:12] 2026-01-11 10:54:39,048 | INFO     | sizes: {0: 2284446, 1: 2284645, 5: 2284907, 11: 2284963, 3088: 2311198, 3089: 2320376, 3096: 2320598}
[2026-01-11 05:55:12] 2026-01-11 10:54:39,048 | INFO     | --------------------------------------------------
[2026-01-11 05:55:12] 2026-01-11 10:54:39,048 | INFO     | 
[2026-01-11 05:55:12] 2026-01-11 10:54:39,048 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-11 05:55:12] 2026-01-11 10:54:39,073 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,073 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,073 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,073 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,074 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,074 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,074 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,074 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,074 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,074 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,075 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,075 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,075 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,075 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,075 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,075 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,076 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,076 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 05:55:12] 2026-01-11 10:54:39,076 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,076 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 05:55:12] 2026-01-11 10:54:39,076 | INFO     | job 6966140777 has completed (purged errors)
[2026-01-11 05:55:12] 2026-01-11 10:54:39,077 | INFO     | overall cleanup function is called
[2026-01-11 05:55:12] 2026-01-11 10:54:40,086 | INFO     | --- collectZombieJob: --- 10, [6090]
[2026-01-11 05:55:12] 2026-01-11 10:54:40,086 | INFO     | zombie collector waiting for pid 6090
[2026-01-11 05:55:12] 2026-01-11 10:54:40,086 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 05:55:12] 2026-01-11 10:54:40,086 | INFO     | collected zombie processes
[2026-01-11 05:55:12] 2026-01-11 10:54:40,087 | INFO     | will attempt to kill all subprocesses of pid=6090
[2026-01-11 05:55:12] 2026-01-11 10:54:40,182 | INFO     | process IDs to be killed: [6090] (in reverse order)
[2026-01-11 05:55:12] 2026-01-11 10:54:40,231 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 05:55:12] 2026-01-11 10:54:40,231 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 05:55:12] 2026-01-11 10:54:40,235 | INFO     | did not find any defunct processes belonging to 6090
[2026-01-11 05:55:12] 2026-01-11 10:54:40,238 | INFO     | did not find any defunct processes belonging to 6090
[2026-01-11 05:55:12] 2026-01-11 10:54:40,239 | INFO     | ready for new job
[2026-01-11 05:55:12] 2026-01-11 10:54:40,239 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 05:55:12] 2026-01-11 10:54:40,240 | INFO     | ***************************************
[2026-01-11 05:55:12] 2026-01-11 10:54:40,240 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 05:55:12] 2026-01-11 10:54:40,240 | INFO     | ***************************************
[2026-01-11 05:55:12] 2026-01-11 10:54:40,240 | INFO     | 
[2026-01-11 05:55:12] 2026-01-11 10:54:40,241 | INFO     | architecture information:
[2026-01-11 05:55:12] 2026-01-11 10:54:40,242 | INFO     | executing command: cat /etc/os-release
[2026-01-11 05:55:12] 2026-01-11 10:54:40,256 | INFO     | cat /etc/os-release:
[2026-01-11 05:55:12] NAME="CentOS Linux"
[2026-01-11 05:55:12] VERSION="7 (Core)"
[2026-01-11 05:55:12] ID="centos"
[2026-01-11 05:55:12] ID_LIKE="rhel fedora"
[2026-01-11 05:55:12] VERSION_ID="7"
[2026-01-11 05:55:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 05:55:12] ANSI_COLOR="0;31"
[2026-01-11 05:55:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 05:55:12] HOME_URL="https://www.centos.org/"
[2026-01-11 05:55:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 05:55:12] 
[2026-01-11 05:55:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 05:55:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 05:55:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 05:55:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 05:55:12] 
[2026-01-11 05:55:12] 2026-01-11 10:54:40,256 | INFO     | ***************************************
[2026-01-11 05:55:12] 2026-01-11 10:54:40,759 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-11 05:55:12] 2026-01-11 10:54:40,774 | INFO     | sufficient remaining disk space (28954329088 B)
[2026-01-11 05:55:12] 2026-01-11 10:54:40,775 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 05:55:12] 2026-01-11 10:54:40,775 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 05:55:12] 2026-01-11 10:54:40,775 | INFO     | update_server=False
[2026-01-11 05:55:12] 2026-01-11 10:54:40,775 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 05:55:12] 2026-01-11 10:54:40,775 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 05:55:12] 2026-01-11 10:54:40,776 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 05:55:12] 2026-01-11 10:54:40,949 | INFO     | all job control threads have been joined
[2026-01-11 05:55:12] 2026-01-11 10:54:40,983 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 05:55:12] 2026-01-11 10:54:40,983 | INFO     | aborting loop
[2026-01-11 05:55:12] 2026-01-11 10:54:41,368 | INFO     | all payload control threads have been joined
[2026-01-11 05:55:12] 2026-01-11 10:54:41,607 | INFO     | all data control threads have been joined
[2026-01-11 05:55:12] 2026-01-11 10:54:41,781 | INFO     | [job] retrieve thread has finished
[2026-01-11 05:55:12] 2026-01-11 10:54:41,781 | INFO     | [job] queue monitor thread has finished
[2026-01-11 05:55:12] 2026-01-11 10:54:41,844 | INFO     | [payload] validate_post thread has finished
[2026-01-11 05:55:12] 2026-01-11 10:54:41,849 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 05:55:12] 2026-01-11 10:54:41,955 | INFO     | [job] control thread has finished
[2026-01-11 05:55:12] 2026-01-11 10:54:41,989 | INFO     | [job] job monitor thread has finished
[2026-01-11 05:55:12] 2026-01-11 10:54:42,071 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 05:55:12] 2026-01-11 10:54:42,092 | INFO     | [data] copytool_in thread has finished
[2026-01-11 05:55:12] 2026-01-11 10:54:42,374 | INFO     | [payload] control thread has finished
[2026-01-11 05:55:12] 2026-01-11 10:54:42,488 | INFO     | [payload] failed_post thread has finished
[2026-01-11 05:55:12] 2026-01-11 10:54:42,613 | INFO     | [data] control thread has finished
[2026-01-11 05:55:12] 2026-01-11 10:54:42,658 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 05:55:12] 2026-01-11 10:54:42,758 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 05:55:12] 2026-01-11 10:54:42,781 | INFO     | [data] copytool_out thread has finished
[2026-01-11 05:55:12] 2026-01-11 10:54:43,139 | INFO     | [job] validate thread has finished
[2026-01-11 05:55:12] 2026-01-11 10:54:46,764 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 05:55:12] 2026-01-11 10:54:49,924 | INFO     | [monitor] cgroup control has ended
[2026-01-11 05:55:12] 2026-01-11 10:54:51,339 | INFO     | job.realtimelogging is not enabled
[2026-01-11 05:55:12] 2026-01-11 10:54:52,345 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 05:55:12] 2026-01-11 10:54:54,369 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140597871429440)>', '<ExcThread(monitor, started 140597281150720)>']
[2026-01-11 05:55:12] 2026-01-11 10:54:59,388 | INFO     | all workflow threads have been joined
[2026-01-11 05:55:12] 2026-01-11 10:54:59,389 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 05:55:12] 2026-01-11 10:54:59,389 | INFO     | traces error code: 0
[2026-01-11 05:55:12] 2026-01-11 10:54:59,389 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 05:55:12] 2026-01-11 10:55:11,872 | INFO     | PID=31893 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-11 05:55:12] 2026-01-11 10:55:11,873 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 05:55:12] 2026-01-11 10:55:11,873 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 05:55:12] 2026-01-11 10:55:11,873 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 05:55:12] 2026-01-11 10:55:11,874 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 05:55:12] 2026-01-11 10:55:11,874 | INFO     | [monitor] control thread has ended
[2026-01-11 05:55:12] 2026-01-11 10:55:11,960 [wrapper] ==== pilot stdout END ====
[2026-01-11 05:55:12] 2026-01-11 10:55:11,963 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 05:55:12] 2026-01-11 10:55:11,966 [wrapper] pilotpid: 31893
[2026-01-11 05:55:12] 2026-01-11 10:55:11,970 [wrapper] Pilot exit status: 0
[2026-01-11 05:55:12] 2026-01-11 10:55:11,983 [wrapper] pandaids: 6966140777
[2026-01-11 05:55:12] 2026-01-11 10:55:12,022 [wrapper] cleanup supervisor_pilot 25055 31894
[2026-01-11 05:55:12] 2026-01-11 10:55:12,026 [wrapper] Test setup, not cleaning
[2026-01-11 05:55:12] 2026-01-11 10:55:12,030 [wrapper] apfmon messages muted
[2026-01-11 05:55:12] 2026-01-11 10:55:12,034 [wrapper] ==== wrapper stdout END ====
[2026-01-11 05:55:12] 2026-01-11 10:55:12,037 [wrapper] ==== wrapper stderr END ====
[2026-01-11 05:55:12]  *** Error codes and diagnostics ***
[2026-01-11 05:55:12]     "exeErrorCode": 0,
[2026-01-11 05:55:12]     "exeErrorDiag": "",
[2026-01-11 05:55:12]     "pilotErrorCode": 0,
[2026-01-11 05:55:12]     "pilotErrorDiag": "",
[2026-01-11 05:55:12]  *** Listing of results directory ***
[2026-01-11 05:55:12] total 434812
[2026-01-11 05:55:12] -rw-r--r-- 1 boincer umatlas    579449 Jan 11 04:12 pilot3.tar.gz
[2026-01-11 05:55:12] -rwx------ 1 boincer umatlas     36322 Jan 11 05:01 runpilot2-wrapper.sh
[2026-01-11 05:55:12] -rw-r--r-- 1 boincer umatlas      5112 Jan 11 05:01 queuedata.json
[2026-01-11 05:55:12] -rw-r--r-- 1 boincer umatlas       100 Jan 11 05:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 05:55:12] -rwxr-xr-x 1 boincer umatlas      7986 Jan 11 05:02 run_atlas
[2026-01-11 05:55:12] -rw-r--r-- 1 boincer umatlas       105 Jan 11 05:02 job.xml
[2026-01-11 05:55:12] -rw-r--r-- 2 boincer umatlas 393209342 Jan 11 05:02 EVNT.47962006._000074.pool.root.1
[2026-01-11 05:55:12] -rw-r--r-- 2 boincer umatlas     15847 Jan 11 05:02 start_atlas.sh
[2026-01-11 05:55:12] drwxrwx--x 2 boincer umatlas      4096 Jan 11 05:02 shared
[2026-01-11 05:55:12] -rw-r--r-- 2 boincer umatlas    592607 Jan 11 05:02 input.tar.gz
[2026-01-11 05:55:12] -rw-r--r-- 1 boincer umatlas         0 Jan 11 05:02 boinc_lockfile
[2026-01-11 05:55:12] -rw-r--r-- 1 boincer umatlas      2888 Jan 11 05:02 pandaJob.out
[2026-01-11 05:55:12] -rw------- 1 boincer umatlas        57 Jan 11 05:02 setup.sh.local
[2026-01-11 05:55:12] -rw------- 1 boincer umatlas    989548 Jan 11 05:02 agis_schedconf.cvmfs.json
[2026-01-11 05:55:12] -rw------- 1 boincer umatlas   1516240 Jan 11 05:02 agis_ddmendpoints.agis.ALL.json
[2026-01-11 05:55:12] drwx------ 5 boincer umatlas      4096 Jan 11 05:02 pilot3
[2026-01-11 05:55:12] -rw-r--r-- 1 boincer umatlas       529 Jan 11 05:46 boinc_task_state.xml
[2026-01-11 05:55:12] -rw------- 1 boincer umatlas  44805251 Jan 11 05:54 HITS.47962010._003006.pool.root.1
[2026-01-11 05:55:12] -rw------- 1 boincer umatlas      1050 Jan 11 05:54 memory_monitor_summary.json
[2026-01-11 05:55:12] -rw------- 1 boincer umatlas   1182349 Jan 11 05:54 log.47962010._003006.job.log.tgz.1
[2026-01-11 05:55:12] -rw------- 1 boincer umatlas      8614 Jan 11 05:54 heartbeat.json
[2026-01-11 05:55:12] -rw-r--r-- 1 boincer umatlas      5950 Jan 11 05:54 init_data.xml
[2026-01-11 05:55:12] -rw-r--r-- 1 boincer umatlas      8192 Jan 11 05:54 boinc_mmap_file
[2026-01-11 05:55:12] -rw-r--r-- 1 boincer umatlas        27 Jan 11 05:54 wrapper_checkpoint.txt
[2026-01-11 05:55:12] -rw------- 1 boincer umatlas        95 Jan 11 05:55 pilot_heartbeat.json
[2026-01-11 05:55:12] -rw------- 1 boincer umatlas       745 Jan 11 05:55 pilotlog.txt
[2026-01-11 05:55:12] -rw------- 1 boincer umatlas    481644 Jan 11 05:55 log.47962010._003006.job.log.1
[2026-01-11 05:55:12] -rw------- 1 boincer umatlas       353 Jan 11 05:55 output.list
[2026-01-11 05:55:12] -rw-r--r-- 1 boincer umatlas       620 Jan 11 05:55 runtime_log
[2026-01-11 05:55:12] -rw------- 1 boincer umatlas   1679360 Jan 11 05:55 result.tar.gz
[2026-01-11 05:55:12] -rw------- 1 boincer umatlas       660 Jan 11 05:55 ZhuKDmlR7y8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmd1mKDmbUHvPo.diag
[2026-01-11 05:55:12] -rw-r--r-- 1 boincer umatlas      9342 Jan 11 05:55 runtime_log.err
[2026-01-11 05:55:12] -rw-r--r-- 1 boincer umatlas     21855 Jan 11 05:55 stderr.txt
[2026-01-11 05:55:12] HITS file was successfully produced:
[2026-01-11 05:55:12] -rw------- 1 boincer umatlas 44805251 Jan 11 05:54 shared/HITS.pool.root.1
[2026-01-11 05:55:12]  *** Contents of shared directory: ***
[2026-01-11 05:55:12] total 429988
[2026-01-11 05:55:12] -rw-r--r-- 2 boincer umatlas 393209342 Jan 11 05:02 ATLAS.root_0
[2026-01-11 05:55:12] -rw-r--r-- 2 boincer umatlas     15847 Jan 11 05:02 start_atlas.sh
[2026-01-11 05:55:12] -rw-r--r-- 2 boincer umatlas    592607 Jan 11 05:02 input.tar.gz
[2026-01-11 05:55:12] -rw------- 1 boincer umatlas  44805251 Jan 11 05:54 HITS.pool.root.1
[2026-01-11 05:55:12] -rw------- 1 boincer umatlas   1679360 Jan 11 05:55 result.tar.gz
05:55:14 (27842): run_atlas exited; CPU time 20600.886393
05:55:14 (27842): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN