Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:29:56 (2573343): wrapper (7.7.26015): starting
03:29:56 (2573343): wrapper: running run_atlas (--nthreads 8)
[2026-01-11 03:29:56] Arguments: --nthreads 8
[2026-01-11 03:29:56] Threads: 8
[2026-01-11 03:29:56] Checking for CVMFS
[2026-01-11 03:29:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 03:29:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 03:29:56] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 03:29:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 03:29:57] 2.13.3.0 6634 24929 199488 155010 1 129 25748320 40960001 14941 16776704 0 26906774 99.722 19921866 46286 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-11 03:29:57] CVMFS is ok
[2026-01-11 03:29:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 03:29:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 03:29:57] Further information can be found at the LHC@home message board.
[2026-01-11 03:29:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 03:29:57] Checking for apptainer binary...
[2026-01-11 03:29:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 03:29:57] Running /usr/bin/apptainer --version
[2026-01-11 03:29:57] apptainer version 1.4.5-2.el9
[2026-01-11 03:29:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 03:29:58] c-206-37.aglt2.org
[2026-01-11 03:29:58] apptainer works
[2026-01-11 03:29:58] Set ATHENA_PROC_NUMBER=8
[2026-01-11 03:29:58] Set ATHENA_CORE_NUMBER=8
[2026-01-11 03:29:58] Starting ATLAS job with PandaID=6966105370
[2026-01-11 03:29:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 05:31:19]  *** The last 200 lines of the pilot log: ***
[2026-01-11 05:31:19] 2026-01-11 10:30:44,103 | INFO     | PID=2578836 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 05:31:19] 2026-01-11 10:30:44,103 | INFO     | .. there are 11 such processes running
[2026-01-11 05:31:19] 2026-01-11 10:30:45,103 | INFO     | time since job start (7208s) is within the limit (349056.0s)
[2026-01-11 05:31:19] 2026-01-11 10:30:45,578 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 05:31:19] 2026-01-11 10:30:45,605 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3290.1023750000004
[2026-01-11 05:31:19] 2026-01-11 10:30:45,621 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6966105370/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 05:31:19] 2026-01-11 10:30:45,621 | INFO     | extracted standard info from prmon json
[2026-01-11 05:31:19] 2026-01-11 10:30:45,622 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 05:31:19] 2026-01-11 10:30:45,622 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 05:31:19] 2026-01-11 10:30:45,624 | INFO     | fitting pss+swap vs Time
[2026-01-11 05:31:19] 2026-01-11 10:30:45,624 | INFO     | sum of square deviations: 496494504.7692302
[2026-01-11 05:31:19] 2026-01-11 10:30:45,624 | INFO     | sum of deviations: -8148798971.743591
[2026-01-11 05:31:19] 2026-01-11 10:30:45,624 | INFO     | mean x: 1768123841.4358974
[2026-01-11 05:31:19] 2026-01-11 10:30:45,625 | INFO     | mean y: 2516473.034188034
[2026-01-11 05:31:19] 2026-01-11 10:30:45,625 | INFO     | intersect: 29022144288.864742
[2026-01-11 05:31:19] 2026-01-11 10:30:45,625 | INFO     | chi2: 4.960730399882419
[2026-01-11 05:31:19] 2026-01-11 10:30:45,625 | INFO     | sum of square deviations: 435558544.0
[2026-01-11 05:31:19] 2026-01-11 10:30:45,625 | INFO     | sum of deviations: 23152645086.0
[2026-01-11 05:31:19] 2026-01-11 10:30:45,626 | INFO     | mean x: 1768123689.0
[2026-01-11 05:31:19] 2026-01-11 10:30:45,626 | INFO     | mean y: 2594423.526785714
[2026-01-11 05:31:19] 2026-01-11 10:30:45,626 | INFO     | intersect: -93984174527.48257
[2026-01-11 05:31:19] 2026-01-11 10:30:45,626 | INFO     | chi2: 2.0973648281930606
[2026-01-11 05:31:19] 2026-01-11 10:30:45,626 | INFO     | current chi2=2.0973648281930606 (change=57.72064476144938 %)
[2026-01-11 05:31:19] 2026-01-11 10:30:45,626 | INFO     | sum of square deviations: 379811736.5607471
[2026-01-11 05:31:19] 2026-01-11 10:30:45,627 | INFO     | sum of deviations: 25841960482.00933
[2026-01-11 05:31:19] 2026-01-11 10:30:45,627 | INFO     | mean x: 1768123536.542056
[2026-01-11 05:31:19] 2026-01-11 10:30:45,627 | INFO     | mean y: 2601634.7757009347
[2026-01-11 05:31:19] 2026-01-11 10:30:45,627 | INFO     | intersect: -120298521685.88937
[2026-01-11 05:31:19] 2026-01-11 10:30:45,627 | INFO     | chi2: 2.034261545882368
[2026-01-11 05:31:19] 2026-01-11 10:30:45,627 | INFO     | current chi2=2.034261545882368 (change=3.0086936455903945 %)
[2026-01-11 05:31:19] 2026-01-11 10:30:45,627 | INFO     | right removable region: 106
[2026-01-11 05:31:19] 2026-01-11 10:30:45,627 | INFO     | sum of square deviations: 435469975.9642866
[2026-01-11 05:31:19] 2026-01-11 10:30:45,628 | INFO     | sum of deviations: -31407070436.98214
[2026-01-11 05:31:19] 2026-01-11 10:30:45,628 | INFO     | mean x: 1768123993.982143
[2026-01-11 05:31:19] 2026-01-11 10:30:45,628 | INFO     | mean y: 2573795.0089285714
[2026-01-11 05:31:19] 2026-01-11 10:30:45,628 | INFO     | intersect: 127523638128.66014
[2026-01-11 05:31:19] 2026-01-11 10:30:45,628 | INFO     | chi2: 3.065734992816964
[2026-01-11 05:31:19] 2026-01-11 10:30:45,628 | INFO     | current chi2=3.065734992816964 (change=38.19992731534796 %)
[2026-01-11 05:31:19] 2026-01-11 10:30:45,628 | INFO     | sum of square deviations: 379668268.7289712
[2026-01-11 05:31:19] 2026-01-11 10:30:45,629 | INFO     | sum of deviations: -32673226738.878506
[2026-01-11 05:31:19] 2026-01-11 10:30:45,629 | INFO     | mean x: 1768124146.5140188
[2026-01-11 05:31:19] 2026-01-11 10:30:45,629 | INFO     | mean y: 2577237.2523364485
[2026-01-11 05:31:19] 2026-01-11 10:30:45,629 | INFO     | intersect: 152162570314.73105
[2026-01-11 05:31:19] 2026-01-11 10:30:45,629 | INFO     | chi2: 3.03734227170906
[2026-01-11 05:31:19] 2026-01-11 10:30:45,629 | INFO     | current chi2=3.03734227170906 (change=0.9261309661281412 %)
[2026-01-11 05:31:19] 2026-01-11 10:30:45,630 | INFO     | left removable region: 20
[2026-01-11 05:31:19] 2026-01-11 10:30:45,630 | INFO     | sum of square deviations: 197116012.3255817
[2026-01-11 05:31:19] 2026-01-11 10:30:45,630 | INFO     | sum of deviations: -2353406453.9069777
[2026-01-11 05:31:19] 2026-01-11 10:30:45,630 | INFO     | mean x: 1768124116.139535
[2026-01-11 05:31:19] 2026-01-11 10:30:45,630 | INFO     | mean y: 2688264.8255813955
[2026-01-11 05:31:19] 2026-01-11 10:30:45,630 | INFO     | intersect: 21112666379.431152
[2026-01-11 05:31:19] 2026-01-11 10:30:45,630 | INFO     | chi2: 0.027513719967578894
[2026-01-11 05:31:19] 2026-01-11 10:30:45,631 | INFO     | current memory leak: -11.94 B/s (using 86 data points, chi2=0.03)
[2026-01-11 05:31:19] 2026-01-11 10:30:45,631 | INFO     | could have reported an average CPU frequency of 3282 MHz (7 samples)
[2026-01-11 05:31:19] 2026-01-11 10:30:45,631 | INFO     | ..............................
[2026-01-11 05:31:19] 2026-01-11 10:30:45,631 | INFO     | . Timing measurements:
[2026-01-11 05:31:19] 2026-01-11 10:30:45,631 | INFO     | . get job = 0 s
[2026-01-11 05:31:19] 2026-01-11 10:30:45,631 | INFO     | . initial setup = 3 s
[2026-01-11 05:31:19] 2026-01-11 10:30:45,631 | INFO     | . payload setup = 18 s
[2026-01-11 05:31:19] 2026-01-11 10:30:45,631 | INFO     | . stage-in = 0 s
[2026-01-11 05:31:19] 2026-01-11 10:30:45,631 | INFO     | . payload execution = 7130 s
[2026-01-11 05:31:19] 2026-01-11 10:30:45,631 | INFO     | . stage-out = 1 s
[2026-01-11 05:31:19] 2026-01-11 10:30:45,632 | INFO     | . log creation = 0 s
[2026-01-11 05:31:19] 2026-01-11 10:30:45,632 | INFO     | ..............................
[2026-01-11 05:31:19] 2026-01-11 10:30:45,706 | INFO     | 
[2026-01-11 05:31:19] 2026-01-11 10:30:45,708 | INFO     | job summary report
[2026-01-11 05:31:19] 2026-01-11 10:30:45,708 | INFO     | --------------------------------------------------
[2026-01-11 05:31:19] 2026-01-11 10:30:45,708 | INFO     | PanDA job id: 6966105370
[2026-01-11 05:31:19] 2026-01-11 10:30:45,708 | INFO     | task id: 47962010
[2026-01-11 05:31:19] 2026-01-11 10:30:45,708 | INFO     | errors: (none)
[2026-01-11 05:31:19] 2026-01-11 10:30:45,708 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 05:31:19] 2026-01-11 10:30:45,708 | INFO     | pilot state: finished 
[2026-01-11 05:31:19] 2026-01-11 10:30:45,708 | INFO     | transexitcode: 0
[2026-01-11 05:31:19] 2026-01-11 10:30:45,708 | INFO     | exeerrorcode: 0
[2026-01-11 05:31:19] 2026-01-11 10:30:45,708 | INFO     | exeerrordiag: 
[2026-01-11 05:31:19] 2026-01-11 10:30:45,709 | INFO     | exitcode: 0
[2026-01-11 05:31:19] 2026-01-11 10:30:45,709 | INFO     | exitmsg: OK
[2026-01-11 05:31:19] 2026-01-11 10:30:45,709 | INFO     | cpuconsumptiontime: 12800 s
[2026-01-11 05:31:19] 2026-01-11 10:30:45,709 | INFO     | nevents: 50
[2026-01-11 05:31:19] 2026-01-11 10:30:45,709 | INFO     | neventsw: 0
[2026-01-11 05:31:19] 2026-01-11 10:30:45,709 | INFO     | pid: 2585579
[2026-01-11 05:31:19] 2026-01-11 10:30:45,709 | INFO     | pgrp: 2585579
[2026-01-11 05:31:19] 2026-01-11 10:30:45,709 | INFO     | corecount: 8
[2026-01-11 05:31:19] 2026-01-11 10:30:45,709 | INFO     | event service: False
[2026-01-11 05:31:19] 2026-01-11 10:30:45,709 | INFO     | sizes: {0: 2284341, 1: 2284596, 12: 2284596, 15: 2284886, 23: 2284914, 7153: 2313155, 7155: 2322149, 7157: 2322205, 7174: 2322451}
[2026-01-11 05:31:19] 2026-01-11 10:30:45,709 | INFO     | --------------------------------------------------
[2026-01-11 05:31:19] 2026-01-11 10:30:45,709 | INFO     | 
[2026-01-11 05:31:19] 2026-01-11 10:30:45,709 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-11 05:31:19] 2026-01-11 10:30:45,786 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,786 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,786 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,786 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,787 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,787 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,787 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,787 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,787 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,787 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,787 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,787 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,787 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,787 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,787 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,787 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,788 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,788 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 05:31:19] 2026-01-11 10:30:45,788 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,788 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 05:31:19] 2026-01-11 10:30:45,788 | INFO     | job 6966105370 has completed (purged errors)
[2026-01-11 05:31:19] 2026-01-11 10:30:45,788 | INFO     | overall cleanup function is called
[2026-01-11 05:31:19] 2026-01-11 10:30:46,858 | INFO     | --- collectZombieJob: --- 10, [2585579]
[2026-01-11 05:31:19] 2026-01-11 10:30:46,859 | INFO     | zombie collector waiting for pid 2585579
[2026-01-11 05:31:19] 2026-01-11 10:30:46,859 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 05:31:19] 2026-01-11 10:30:46,859 | INFO     | collected zombie processes
[2026-01-11 05:31:19] 2026-01-11 10:30:46,859 | INFO     | will attempt to kill all subprocesses of pid=2585579
[2026-01-11 05:31:19] 2026-01-11 10:30:48,011 | INFO     | process IDs to be killed: [2585579] (in reverse order)
[2026-01-11 05:31:19] 2026-01-11 10:30:48,489 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 05:31:19] 2026-01-11 10:30:48,490 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 05:31:19] 2026-01-11 10:30:48,594 | INFO     | did not find any defunct processes belonging to 2585579
[2026-01-11 05:31:19] 2026-01-11 10:30:48,677 | INFO     | did not find any defunct processes belonging to 2585579
[2026-01-11 05:31:19] 2026-01-11 10:30:48,677 | INFO     | ready for new job
[2026-01-11 05:31:19] 2026-01-11 10:30:48,677 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 05:31:19] 2026-01-11 10:30:48,679 | INFO     | ***************************************
[2026-01-11 05:31:19] 2026-01-11 10:30:48,679 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 05:31:19] 2026-01-11 10:30:48,679 | INFO     | ***************************************
[2026-01-11 05:31:19] 2026-01-11 10:30:48,679 | INFO     | 
[2026-01-11 05:31:19] 2026-01-11 10:30:48,712 | INFO     | architecture information:
[2026-01-11 05:31:19] 2026-01-11 10:30:48,745 | INFO     | executing command: cat /etc/os-release
[2026-01-11 05:31:19] 2026-01-11 10:30:48,969 | INFO     | cat /etc/os-release:
[2026-01-11 05:31:19] NAME="CentOS Linux"
[2026-01-11 05:31:19] VERSION="7 (Core)"
[2026-01-11 05:31:19] ID="centos"
[2026-01-11 05:31:19] ID_LIKE="rhel fedora"
[2026-01-11 05:31:19] VERSION_ID="7"
[2026-01-11 05:31:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 05:31:19] ANSI_COLOR="0;31"
[2026-01-11 05:31:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 05:31:19] HOME_URL="https://www.centos.org/"
[2026-01-11 05:31:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 05:31:19] 
[2026-01-11 05:31:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 05:31:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 05:31:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 05:31:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 05:31:19] 
[2026-01-11 05:31:19] 2026-01-11 10:30:48,969 | INFO     | ***************************************
[2026-01-11 05:31:19] 2026-01-11 10:30:49,473 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-11 05:31:19] 2026-01-11 10:30:49,578 | INFO     | sufficient remaining disk space (82137055232 B)
[2026-01-11 05:31:19] 2026-01-11 10:30:49,578 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 05:31:19] 2026-01-11 10:30:49,578 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 05:31:19] 2026-01-11 10:30:49,578 | INFO     | update_server=False
[2026-01-11 05:31:19] 2026-01-11 10:30:49,578 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 05:31:19] 2026-01-11 10:30:49,585 | INFO     | [monitor] cgroup control has ended
[2026-01-11 05:31:19] 2026-01-11 10:30:49,803 | INFO     | all data control threads have been joined
[2026-01-11 05:31:19] 2026-01-11 10:30:49,811 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 05:31:19] 2026-01-11 10:30:50,089 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 05:31:19] 2026-01-11 10:30:50,090 | INFO     | aborting loop
[2026-01-11 05:31:19] 2026-01-11 10:30:50,119 | INFO     | all job control threads have been joined
[2026-01-11 05:31:19] 2026-01-11 10:30:50,585 | INFO     | [job] retrieve thread has finished
[2026-01-11 05:31:19] 2026-01-11 10:30:50,720 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 05:31:19] 2026-01-11 10:30:50,791 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 05:31:19] 2026-01-11 10:30:50,809 | INFO     | [data] control thread has finished
[2026-01-11 05:31:19] 2026-01-11 10:30:51,031 | INFO     | all payload control threads have been joined
[2026-01-11 05:31:19] 2026-01-11 10:30:51,103 | INFO     | [job] job monitor thread has finished
[2026-01-11 05:31:19] 2026-01-11 10:30:51,126 | INFO     | [job] control thread has finished
[2026-01-11 05:31:19] 2026-01-11 10:30:51,215 | INFO     | [job] validate thread has finished
[2026-01-11 05:31:19] 2026-01-11 10:30:51,287 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 05:31:19] 2026-01-11 10:30:51,428 | INFO     | [payload] failed_post thread has finished
[2026-01-11 05:31:19] 2026-01-11 10:30:51,447 | INFO     | [payload] validate_post thread has finished
[2026-01-11 05:31:19] 2026-01-11 10:30:51,730 | INFO     | [job] queue monitor thread has finished
[2026-01-11 05:31:19] 2026-01-11 10:30:51,818 | INFO     | [data] copytool_out thread has finished
[2026-01-11 05:31:19] 2026-01-11 10:30:51,858 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 05:31:19] 2026-01-11 10:30:52,037 | INFO     | [payload] control thread has finished
[2026-01-11 05:31:19] 2026-01-11 10:30:52,087 | INFO     | [data] copytool_in thread has finished
[2026-01-11 05:31:19] 2026-01-11 10:30:52,205 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 05:31:19] 2026-01-11 10:30:56,212 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 05:31:19] 2026-01-11 10:31:00,340 | INFO     | job.realtimelogging is not enabled
[2026-01-11 05:31:19] 2026-01-11 10:31:01,349 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 05:31:19] 2026-01-11 10:31:02,334 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139933848483648)>', '<ExcThread(monitor, started 139933507376896)>']
[2026-01-11 05:31:19] 2026-01-11 10:31:07,360 | INFO     | all workflow threads have been joined
[2026-01-11 05:31:19] 2026-01-11 10:31:07,360 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 05:31:19] 2026-01-11 10:31:07,360 | INFO     | traces error code: 0
[2026-01-11 05:31:19] 2026-01-11 10:31:07,360 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 05:31:19] 2026-01-11 10:31:18,916 | INFO     | PID=2578836 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 05:31:19] 2026-01-11 10:31:18,916 | INFO     | .. there are 11 such processes running
[2026-01-11 05:31:19] 2026-01-11 10:31:18,918 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 05:31:19] 2026-01-11 10:31:18,918 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 05:31:19] 2026-01-11 10:31:18,918 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 05:31:19] 2026-01-11 10:31:18,918 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 05:31:19] 2026-01-11 10:31:18,918 | INFO     | [monitor] control thread has ended
[2026-01-11 05:31:19] 2026-01-11 10:31:19,029 [wrapper] ==== pilot stdout END ====
[2026-01-11 05:31:19] 2026-01-11 10:31:19,054 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 05:31:19] 2026-01-11 10:31:19,119 [wrapper] pilotpid: 2578836
[2026-01-11 05:31:19] 2026-01-11 10:31:19,171 [wrapper] Pilot exit status: 0
[2026-01-11 05:31:19] 2026-01-11 10:31:19,319 [wrapper] pandaids: 6966105370
[2026-01-11 05:31:19] 2026-01-11 10:31:19,494 [wrapper] cleanup supervisor_pilot 2765528 2578837
[2026-01-11 05:31:19] 2026-01-11 10:31:19,498 [wrapper] Test setup, not cleaning
[2026-01-11 05:31:19] 2026-01-11 10:31:19,500 [wrapper] apfmon messages muted
[2026-01-11 05:31:19] 2026-01-11 10:31:19,502 [wrapper] ==== wrapper stdout END ====
[2026-01-11 05:31:19] 2026-01-11 10:31:19,504 [wrapper] ==== wrapper stderr END ====
[2026-01-11 05:31:19]  *** Error codes and diagnostics ***
[2026-01-11 05:31:19]     "exeErrorCode": 0,
[2026-01-11 05:31:19]     "exeErrorDiag": "",
[2026-01-11 05:31:19]     "pilotErrorCode": 0,
[2026-01-11 05:31:19]     "pilotErrorDiag": "",
[2026-01-11 05:31:19]  *** Listing of results directory ***
[2026-01-11 05:31:19] total 435568
[2026-01-11 05:31:19] -rw-r--r--. 1 boincer umatlas    579449 Jan 11 03:14 pilot3.tar.gz
[2026-01-11 05:31:19] -rwx------. 1 boincer umatlas     36322 Jan 11 03:29 runpilot2-wrapper.sh
[2026-01-11 05:31:19] -rw-r--r--. 1 boincer umatlas      5112 Jan 11 03:29 queuedata.json
[2026-01-11 05:31:19] -rw-r--r--. 1 boincer umatlas       100 Jan 11 03:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 05:31:19] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 11 03:29 run_atlas
[2026-01-11 05:31:19] -rw-r--r--. 1 boincer umatlas       105 Jan 11 03:29 job.xml
[2026-01-11 05:31:19] -rw-r--r--. 2 boincer umatlas 392129520 Jan 11 03:29 EVNT.47962006._000023.pool.root.1
[2026-01-11 05:31:19] -rw-r--r--. 2 boincer umatlas     15847 Jan 11 03:29 start_atlas.sh
[2026-01-11 05:31:19] drwxrwx--x. 2 boincer umatlas      4096 Jan 11 03:29 shared
[2026-01-11 05:31:19] -rw-r--r--. 2 boincer umatlas    592617 Jan 11 03:29 input.tar.gz
[2026-01-11 05:31:19] -rw-r--r--. 1 boincer umatlas         0 Jan 11 03:29 boinc_lockfile
[2026-01-11 05:31:19] -rw-r--r--. 1 boincer umatlas      2889 Jan 11 03:29 pandaJob.out
[2026-01-11 05:31:19] -rw-------. 1 boincer umatlas        57 Jan 11 03:29 setup.sh.local
[2026-01-11 05:31:19] -rw-------. 1 boincer umatlas    989548 Jan 11 03:30 agis_schedconf.cvmfs.json
[2026-01-11 05:31:19] -rw-------. 1 boincer umatlas   1516240 Jan 11 03:30 agis_ddmendpoints.agis.ALL.json
[2026-01-11 05:31:19] drwx------. 5 boincer umatlas      4096 Jan 11 03:30 pilot3
[2026-01-11 05:31:19] -rw-r--r--. 1 boincer umatlas      6905 Jan 11 05:18 init_data.xml
[2026-01-11 05:31:19] -rw-r--r--. 1 boincer umatlas       530 Jan 11 05:20 boinc_task_state.xml
[2026-01-11 05:31:19] -rw-------. 1 boincer umatlas  45529181 Jan 11 05:30 HITS.47962010._003002.pool.root.1
[2026-01-11 05:31:19] -rw-------. 1 boincer umatlas      1024 Jan 11 05:30 memory_monitor_summary.json
[2026-01-11 05:31:19] -rw-------. 1 boincer umatlas   1228055 Jan 11 05:30 log.47962010._003002.job.log.tgz.1
[2026-01-11 05:31:19] -rw-------. 1 boincer umatlas        95 Jan 11 05:30 pilot_heartbeat.json
[2026-01-11 05:31:19] -rw-------. 1 boincer umatlas      8531 Jan 11 05:30 heartbeat.json
[2026-01-11 05:31:19] -rw-r--r--. 1 boincer umatlas      8192 Jan 11 05:31 boinc_mmap_file
[2026-01-11 05:31:19] -rw-r--r--. 1 boincer umatlas        27 Jan 11 05:31 wrapper_checkpoint.txt
[2026-01-11 05:31:19] -rw-------. 1 boincer umatlas       823 Jan 11 05:31 pilotlog.txt
[2026-01-11 05:31:19] -rw-------. 1 boincer umatlas    997988 Jan 11 05:31 log.47962010._003002.job.log.1
[2026-01-11 05:31:19] -rw-------. 1 boincer umatlas       353 Jan 11 05:31 output.list
[2026-01-11 05:31:19] -rw-r--r--. 1 boincer umatlas       620 Jan 11 05:31 runtime_log
[2026-01-11 05:31:19] -rw-------. 1 boincer umatlas   2242560 Jan 11 05:31 result.tar.gz
[2026-01-11 05:31:19] -rw-r--r--. 1 boincer umatlas      9342 Jan 11 05:31 runtime_log.err
[2026-01-11 05:31:19] -rw-------. 1 boincer umatlas       654 Jan 11 05:31 HeHLDm5z5y8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmS1mKDm6QUtbn.diag
[2026-01-11 05:31:19] -rw-r--r--. 1 boincer umatlas     21261 Jan 11 05:31 stderr.txt
[2026-01-11 05:31:19] HITS file was successfully produced:
[2026-01-11 05:31:19] -rw-------. 1 boincer umatlas 45529181 Jan 11 05:30 shared/HITS.pool.root.1
[2026-01-11 05:31:19]  *** Contents of shared directory: ***
[2026-01-11 05:31:19] total 430196
[2026-01-11 05:31:19] -rw-r--r--. 2 boincer umatlas 392129520 Jan 11 03:29 ATLAS.root_0
[2026-01-11 05:31:19] -rw-r--r--. 2 boincer umatlas     15847 Jan 11 03:29 start_atlas.sh
[2026-01-11 05:31:19] -rw-r--r--. 2 boincer umatlas    592617 Jan 11 03:29 input.tar.gz
[2026-01-11 05:31:19] -rw-------. 1 boincer umatlas  45529181 Jan 11 05:30 HITS.pool.root.1
[2026-01-11 05:31:19] -rw-------. 1 boincer umatlas   2242560 Jan 11 05:31 result.tar.gz
05:31:21 (2573343): run_atlas exited; CPU time 12753.987095
05:31:21 (2573343): called boinc_finish(0)

</stderr_txt>
]]>

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