Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:28:31 (1956055): wrapper (7.7.26015): starting
03:28:31 (1956055): wrapper: running run_atlas (--nthreads 8)
[2026-01-11 03:28:31] Arguments: --nthreads 8
[2026-01-11 03:28:31] Threads: 8
[2026-01-11 03:28:31] Checking for CVMFS
[2026-01-11 03:28:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 03:28:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 03:28:31] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 03:28:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 03:28:31] 2.13.3.0 9735 96052 357496 155010 1 141 30790979 32935937 17576 16776704 0 411959969 99.690 326525975 32921 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-11 03:28:31] CVMFS is ok
[2026-01-11 03:28:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 03:28:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 03:28:31] Further information can be found at the LHC@home message board.
[2026-01-11 03:28:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 03:28:31] Checking for apptainer binary...
[2026-01-11 03:28:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 03:28:31] Running /usr/bin/apptainer --version
[2026-01-11 03:28:32] apptainer version 1.4.5-2.el9
[2026-01-11 03:28:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 03:28:32] c-8-15.aglt2.org
[2026-01-11 03:28:32] apptainer works
[2026-01-11 03:28:32] Set ATHENA_PROC_NUMBER=8
[2026-01-11 03:28:32] Set ATHENA_CORE_NUMBER=8
[2026-01-11 03:28:32] Starting ATLAS job with PandaID=6962918588
[2026-01-11 03:28:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 16:51:40]  *** The last 200 lines of the pilot log: ***
[2026-01-11 16:51:40] 2026-01-11 21:51:05,033 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1817
[2026-01-11 16:51:40] 2026-01-11 21:51:05,051 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6962918588/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 16:51:40] 2026-01-11 21:51:05,052 | INFO     | extracted standard info from prmon json
[2026-01-11 16:51:40] 2026-01-11 21:51:05,052 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 16:51:40] 2026-01-11 21:51:05,053 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 16:51:40] 2026-01-11 21:51:05,054 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 16:51:40] 2026-01-11 21:51:05,055 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 16:51:40] 2026-01-11 21:51:05,070 | INFO     | fitting pss+swap vs Time
[2026-01-11 16:51:40] 2026-01-11 21:51:05,071 | INFO     | sum of square deviations: 152301840625.03867
[2026-01-11 16:51:40] 2026-01-11 21:51:05,086 | INFO     | sum of deviations: 182096031347.54004
[2026-01-11 16:51:40] 2026-01-11 21:51:05,087 | INFO     | mean x: 1768144193.397972
[2026-01-11 16:51:40] 2026-01-11 21:51:05,087 | INFO     | mean y: 2526600.0874524713
[2026-01-11 16:51:40] 2026-01-11 21:51:05,087 | INFO     | intersect: -2111512463.0427887
[2026-01-11 16:51:40] 2026-01-11 21:51:05,088 | INFO     | chi2: 2.3226418323553135
[2026-01-11 16:51:40] 2026-01-11 21:51:05,089 | INFO     | sum of square deviations: 149424747564.24017
[2026-01-11 16:51:40] 2026-01-11 21:51:05,104 | INFO     | sum of deviations: 227250298871.71936
[2026-01-11 16:51:40] 2026-01-11 21:51:05,104 | INFO     | mean x: 1768144040.9005103
[2026-01-11 16:51:40] 2026-01-11 21:51:05,104 | INFO     | mean y: 2528979.701530612
[2026-01-11 16:51:40] 2026-01-11 21:51:05,105 | INFO     | intersect: -2686525332.203164
[2026-01-11 16:51:40] 2026-01-11 21:51:05,106 | INFO     | chi2: 1.6464289020995988
[2026-01-11 16:51:40] 2026-01-11 21:51:05,106 | INFO     | current chi2=1.6464289020995988 (change=29.11395639378413 %)
[2026-01-11 16:51:40] 2026-01-11 21:51:05,107 | INFO     | sum of square deviations: 146584072723.2373
[2026-01-11 16:51:40] 2026-01-11 21:51:05,121 | INFO     | sum of deviations: 221217906102.00113
[2026-01-11 16:51:40] 2026-01-11 21:51:05,122 | INFO     | mean x: 1768143888.4017973
[2026-01-11 16:51:40] 2026-01-11 21:51:05,122 | INFO     | mean y: 2528655.8562259306
[2026-01-11 16:51:40] 2026-01-11 21:51:05,122 | INFO     | intersect: -2665872360.793174
[2026-01-11 16:51:40] 2026-01-11 21:51:05,123 | INFO     | chi2: 1.646036055910233
[2026-01-11 16:51:40] 2026-01-11 21:51:05,123 | INFO     | current chi2=1.646036055910233 (change=0.02386050128644388 %)
[2026-01-11 16:51:40] 2026-01-11 21:51:05,123 | INFO     | right removable region: 778
[2026-01-11 16:51:40] 2026-01-11 21:51:05,124 | INFO     | sum of square deviations: 149424556024.23993
[2026-01-11 16:51:40] 2026-01-11 21:51:05,139 | INFO     | sum of deviations: 54261625005.696594
[2026-01-11 16:51:40] 2026-01-11 21:51:05,140 | INFO     | mean x: 1768144345.9005103
[2026-01-11 16:51:40] 2026-01-11 21:51:05,140 | INFO     | mean y: 2533357.5089285714
[2026-01-11 16:51:40] 2026-01-11 21:51:05,140 | INFO     | intersect: -639545749.2051796
[2026-01-11 16:51:40] 2026-01-11 21:51:05,141 | INFO     | chi2: 0.8749453433454276
[2026-01-11 16:51:40] 2026-01-11 21:51:05,141 | INFO     | current chi2=0.8749453433454276 (change=62.329734565308556 %)
[2026-01-11 16:51:40] 2026-01-11 21:51:05,142 | INFO     | sum of square deviations: 146583737223.4329
[2026-01-11 16:51:40] 2026-01-11 21:51:05,157 | INFO     | sum of deviations: 33948644620.184814
[2026-01-11 16:51:40] 2026-01-11 21:51:05,157 | INFO     | mean x: 1768144498.403081
[2026-01-11 16:51:40] 2026-01-11 21:51:05,157 | INFO     | mean y: 2534447.922978177
[2026-01-11 16:51:40] 2026-01-11 21:51:05,158 | INFO     | intersect: -406966021.57266074
[2026-01-11 16:51:40] 2026-01-11 21:51:05,159 | INFO     | chi2: 0.8546220995421473
[2026-01-11 16:51:40] 2026-01-11 21:51:05,159 | INFO     | current chi2=0.8546220995421473 (change=2.322801527872893 %)
[2026-01-11 16:51:40] 2026-01-11 21:51:05,159 | INFO     | left removable region: 20
[2026-01-11 16:51:40] 2026-01-11 21:51:05,160 | INFO     | sum of square deviations: 135045679176.71902
[2026-01-11 16:51:40] 2026-01-11 21:51:05,174 | INFO     | sum of deviations: 85317321231.64644
[2026-01-11 16:51:40] 2026-01-11 21:51:05,175 | INFO     | mean x: 1768144467.908971
[2026-01-11 16:51:40] 2026-01-11 21:51:05,175 | INFO     | mean y: 2535901.110817942
[2026-01-11 16:51:40] 2026-01-11 21:51:05,175 | INFO     | intersect: -1114518346.549661
[2026-01-11 16:51:40] 2026-01-11 21:51:05,176 | INFO     | chi2: 0.1478077458780707
[2026-01-11 16:51:40] 2026-01-11 21:51:05,176 | INFO     | current memory leak: 0.63 B/s (using 758 data points, chi2=0.15)
[2026-01-11 16:51:40] 2026-01-11 21:51:05,177 | INFO     | could have reported an average CPU frequency of 2600 MHz (29 samples)
[2026-01-11 16:51:40] 2026-01-11 21:51:05,177 | INFO     | ..............................
[2026-01-11 16:51:40] 2026-01-11 21:51:05,177 | INFO     | . Timing measurements:
[2026-01-11 16:51:40] 2026-01-11 21:51:05,178 | INFO     | . get job = 0 s
[2026-01-11 16:51:40] 2026-01-11 21:51:05,178 | INFO     | . initial setup = 2 s
[2026-01-11 16:51:40] 2026-01-11 21:51:05,178 | INFO     | . payload setup = 6 s
[2026-01-11 16:51:40] 2026-01-11 21:51:05,178 | INFO     | . stage-in = 0 s
[2026-01-11 16:51:40] 2026-01-11 21:51:05,178 | INFO     | . payload execution = 48080 s
[2026-01-11 16:51:40] 2026-01-11 21:51:05,178 | INFO     | . stage-out = 4 s
[2026-01-11 16:51:40] 2026-01-11 21:51:05,178 | INFO     | . log creation = 0 s
[2026-01-11 16:51:40] 2026-01-11 21:51:05,178 | INFO     | ..............................
[2026-01-11 16:51:40] 2026-01-11 21:51:05,358 | INFO     | 
[2026-01-11 16:51:40] 2026-01-11 21:51:05,358 | INFO     | job summary report
[2026-01-11 16:51:40] 2026-01-11 21:51:05,358 | INFO     | --------------------------------------------------
[2026-01-11 16:51:40] 2026-01-11 21:51:05,359 | INFO     | PanDA job id: 6962918588
[2026-01-11 16:51:40] 2026-01-11 21:51:05,359 | INFO     | task id: 47898826
[2026-01-11 16:51:40] 2026-01-11 21:51:05,359 | INFO     | errors: (none)
[2026-01-11 16:51:40] 2026-01-11 21:51:05,359 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 16:51:40] 2026-01-11 21:51:05,359 | INFO     | pilot state: finished 
[2026-01-11 16:51:40] 2026-01-11 21:51:05,359 | INFO     | transexitcode: 0
[2026-01-11 16:51:40] 2026-01-11 21:51:05,359 | INFO     | exeerrorcode: 0
[2026-01-11 16:51:40] 2026-01-11 21:51:05,359 | INFO     | exeerrordiag: 
[2026-01-11 16:51:40] 2026-01-11 21:51:05,359 | INFO     | exitcode: 0
[2026-01-11 16:51:40] 2026-01-11 21:51:05,359 | INFO     | exitmsg: OK
[2026-01-11 16:51:40] 2026-01-11 21:51:05,359 | INFO     | cpuconsumptiontime: 71912 s
[2026-01-11 16:51:40] 2026-01-11 21:51:05,360 | INFO     | nevents: 400
[2026-01-11 16:51:40] 2026-01-11 21:51:05,360 | INFO     | neventsw: 0
[2026-01-11 16:51:40] 2026-01-11 21:51:05,360 | INFO     | pid: 1990437
[2026-01-11 16:51:40] 2026-01-11 21:51:05,360 | INFO     | pgrp: 1990437
[2026-01-11 16:51:40] 2026-01-11 21:51:05,360 | INFO     | corecount: 8
[2026-01-11 16:51:40] 2026-01-11 21:51:05,360 | INFO     | event service: False
[2026-01-11 16:51:40] 2026-01-11 21:51:05,360 | INFO     | sizes: {0: 2283141, 1: 2283997, 7: 2284259, 12: 2284287, 48091: 2329599, 48096: 2338597, 48097: 2338781, 48121: 2338975}
[2026-01-11 16:51:40] 2026-01-11 21:51:05,360 | INFO     | --------------------------------------------------
[2026-01-11 16:51:40] 2026-01-11 21:51:05,360 | INFO     | 
[2026-01-11 16:51:40] 2026-01-11 21:51:05,360 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-11 16:51:40] 2026-01-11 21:51:05,457 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,458 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,458 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,458 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,458 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,458 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,458 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,459 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,459 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,459 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,459 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,459 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,459 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,459 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,459 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,459 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,460 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,460 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 16:51:40] 2026-01-11 21:51:05,460 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,460 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 16:51:40] 2026-01-11 21:51:05,460 | INFO     | job 6962918588 has completed (purged errors)
[2026-01-11 16:51:40] 2026-01-11 21:51:05,460 | INFO     | overall cleanup function is called
[2026-01-11 16:51:40] 2026-01-11 21:51:06,469 | INFO     | --- collectZombieJob: --- 10, [1990437]
[2026-01-11 16:51:40] 2026-01-11 21:51:06,469 | INFO     | zombie collector waiting for pid 1990437
[2026-01-11 16:51:40] 2026-01-11 21:51:06,469 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 16:51:40] 2026-01-11 21:51:06,469 | INFO     | collected zombie processes
[2026-01-11 16:51:40] 2026-01-11 21:51:06,470 | INFO     | will attempt to kill all subprocesses of pid=1990437
[2026-01-11 16:51:40] 2026-01-11 21:51:06,734 | INFO     | PID=1966117 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 16:51:40] 2026-01-11 21:51:06,790 | INFO     | .. there are 33 such processes running
[2026-01-11 16:51:40] 2026-01-11 21:51:07,488 | INFO     | process IDs to be killed: [1990437] (in reverse order)
[2026-01-11 16:51:40] 2026-01-11 21:51:07,814 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 16:51:40] 2026-01-11 21:51:07,814 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 16:51:40] 2026-01-11 21:51:07,864 | INFO     | did not find any defunct processes belonging to 1990437
[2026-01-11 16:51:40] 2026-01-11 21:51:07,915 | INFO     | did not find any defunct processes belonging to 1990437
[2026-01-11 16:51:40] 2026-01-11 21:51:07,915 | INFO     | ready for new job
[2026-01-11 16:51:40] 2026-01-11 21:51:07,915 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 16:51:40] 2026-01-11 21:51:07,919 | INFO     | ***************************************
[2026-01-11 16:51:40] 2026-01-11 21:51:07,919 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 16:51:40] 2026-01-11 21:51:07,919 | INFO     | ***************************************
[2026-01-11 16:51:40] 2026-01-11 21:51:07,919 | INFO     | 
[2026-01-11 16:51:40] 2026-01-11 21:51:07,938 | INFO     | architecture information:
[2026-01-11 16:51:40] 2026-01-11 21:51:07,939 | INFO     | executing command: cat /etc/os-release
[2026-01-11 16:51:40] 2026-01-11 21:51:07,977 | INFO     | cat /etc/os-release:
[2026-01-11 16:51:40] NAME="CentOS Linux"
[2026-01-11 16:51:40] VERSION="7 (Core)"
[2026-01-11 16:51:40] ID="centos"
[2026-01-11 16:51:40] ID_LIKE="rhel fedora"
[2026-01-11 16:51:40] VERSION_ID="7"
[2026-01-11 16:51:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 16:51:40] ANSI_COLOR="0;31"
[2026-01-11 16:51:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 16:51:40] HOME_URL="https://www.centos.org/"
[2026-01-11 16:51:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 16:51:40] 
[2026-01-11 16:51:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 16:51:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 16:51:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 16:51:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 16:51:40] 
[2026-01-11 16:51:40] 2026-01-11 21:51:07,978 | INFO     | ***************************************
[2026-01-11 16:51:40] 2026-01-11 21:51:08,481 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-11 16:51:40] 2026-01-11 21:51:08,558 | INFO     | sufficient remaining disk space (75798413312 B)
[2026-01-11 16:51:40] 2026-01-11 21:51:08,559 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 16:51:40] 2026-01-11 21:51:08,559 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 16:51:40] 2026-01-11 21:51:08,559 | INFO     | update_server=False
[2026-01-11 16:51:40] 2026-01-11 21:51:08,559 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 16:51:40] 2026-01-11 21:51:08,560 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 16:51:40] 2026-01-11 21:51:08,808 | INFO     | all payload control threads have been joined
[2026-01-11 16:51:40] 2026-01-11 21:51:09,090 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 16:51:40] 2026-01-11 21:51:09,090 | INFO     | aborting loop
[2026-01-11 16:51:40] 2026-01-11 21:51:09,565 | INFO     | [job] retrieve thread has finished
[2026-01-11 16:51:40] 2026-01-11 21:51:09,586 | INFO     | all data control threads have been joined
[2026-01-11 16:51:40] 2026-01-11 21:51:09,697 | INFO     | all job control threads have been joined
[2026-01-11 16:51:40] 2026-01-11 21:51:09,731 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 16:51:40] 2026-01-11 21:51:09,814 | INFO     | [payload] control thread has finished
[2026-01-11 16:51:40] 2026-01-11 21:51:09,931 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 16:51:40] 2026-01-11 21:51:10,095 | INFO     | [job] job monitor thread has finished
[2026-01-11 16:51:40] 2026-01-11 21:51:10,303 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 16:51:40] 2026-01-11 21:51:10,317 | INFO     | [data] copytool_in thread has finished
[2026-01-11 16:51:40] 2026-01-11 21:51:10,439 | INFO     | [payload] validate_post thread has finished
[2026-01-11 16:51:40] 2026-01-11 21:51:10,567 | INFO     | [data] copytool_out thread has finished
[2026-01-11 16:51:40] 2026-01-11 21:51:10,592 | INFO     | [data] control thread has finished
[2026-01-11 16:51:40] 2026-01-11 21:51:10,703 | INFO     | [job] control thread has finished
[2026-01-11 16:51:40] 2026-01-11 21:51:10,942 | INFO     | [payload] failed_post thread has finished
[2026-01-11 16:51:40] 2026-01-11 21:51:10,997 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 16:51:40] 2026-01-11 21:51:10,998 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 16:51:40] 2026-01-11 21:51:11,033 | INFO     | [job] validate thread has finished
[2026-01-11 16:51:40] 2026-01-11 21:51:11,309 | INFO     | [job] queue monitor thread has finished
[2026-01-11 16:51:40] 2026-01-11 21:51:13,747 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 16:51:40] 2026-01-11 21:51:19,217 | INFO     | [monitor] cgroup control has ended
[2026-01-11 16:51:40] 2026-01-11 21:51:19,359 | INFO     | job.realtimelogging is not enabled
[2026-01-11 16:51:40] 2026-01-11 21:51:20,365 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 16:51:40] 2026-01-11 21:51:20,492 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139930292037440)>', '<ExcThread(monitor, started 139929799603968)>']
[2026-01-11 16:51:40] 2026-01-11 21:51:25,518 | INFO     | all workflow threads have been joined
[2026-01-11 16:51:40] 2026-01-11 21:51:25,518 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 16:51:40] 2026-01-11 21:51:25,519 | INFO     | traces error code: 0
[2026-01-11 16:51:40] 2026-01-11 21:51:25,519 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 16:51:40] 2026-01-11 21:51:39,591 | INFO     | PID=1966117 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 16:51:40] 2026-01-11 21:51:39,591 | INFO     | .. there are 33 such processes running
[2026-01-11 16:51:40] 2026-01-11 21:51:39,592 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 16:51:40] 2026-01-11 21:51:39,592 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 16:51:40] 2026-01-11 21:51:39,592 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 16:51:40] 2026-01-11 21:51:39,592 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 16:51:40] 2026-01-11 21:51:39,592 | INFO     | [monitor] control thread has ended
[2026-01-11 16:51:40] 2026-01-11 21:51:39,789 [wrapper] ==== pilot stdout END ====
[2026-01-11 16:51:40] 2026-01-11 21:51:39,806 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 16:51:40] 2026-01-11 21:51:39,845 [wrapper] pilotpid: 1966117
[2026-01-11 16:51:40] 2026-01-11 21:51:39,862 [wrapper] Pilot exit status: 0
[2026-01-11 16:51:40] 2026-01-11 21:51:39,917 [wrapper] pandaids: 6962918588
[2026-01-11 16:51:40] 2026-01-11 21:51:40,123 [wrapper] cleanup supervisor_pilot  666971 1966118
[2026-01-11 16:51:40] 2026-01-11 21:51:40,150 [wrapper] Test setup, not cleaning
[2026-01-11 16:51:40] 2026-01-11 21:51:40,204 [wrapper] apfmon messages muted
[2026-01-11 16:51:40] 2026-01-11 21:51:40,242 [wrapper] ==== wrapper stdout END ====
[2026-01-11 16:51:40] 2026-01-11 21:51:40,270 [wrapper] ==== wrapper stderr END ====
[2026-01-11 16:51:40]  *** Error codes and diagnostics ***
[2026-01-11 16:51:40]     "exeErrorCode": 0,
[2026-01-11 16:51:40]     "exeErrorDiag": "",
[2026-01-11 16:51:40]     "pilotErrorCode": 0,
[2026-01-11 16:51:40]     "pilotErrorDiag": "",
[2026-01-11 16:51:40]  *** Listing of results directory ***
[2026-01-11 16:51:41] total 448224
[2026-01-11 16:51:41] -rwx------. 1 boincer umatlas     36322 Jan  8 03:04 runpilot2-wrapper.sh
[2026-01-11 16:51:41] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 03:07 queuedata.json
[2026-01-11 16:51:41] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 03:09 pilot3.tar.gz
[2026-01-11 16:51:41] -rw-r--r--. 1 boincer umatlas       100 Jan 11 03:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 16:51:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 11 03:28 run_atlas
[2026-01-11 16:51:41] -rw-r--r--. 1 boincer umatlas       105 Jan 11 03:28 job.xml
[2026-01-11 16:51:41] -rw-r--r--. 2 boincer umatlas 222779937 Jan 11 03:28 EVNT.47898824._000801.pool.root.1
[2026-01-11 16:51:41] -rw-r--r--. 2 boincer umatlas     15847 Jan 11 03:28 start_atlas.sh
[2026-01-11 16:51:41] drwxrwx--x. 2 boincer umatlas      4096 Jan 11 03:28 shared
[2026-01-11 16:51:41] -rw-r--r--. 2 boincer umatlas    592397 Jan 11 03:28 input.tar.gz
[2026-01-11 16:51:41] -rw-r--r--. 1 boincer umatlas         0 Jan 11 03:28 boinc_lockfile
[2026-01-11 16:51:41] -rw-r--r--. 1 boincer umatlas      2519 Jan 11 03:28 pandaJob.out
[2026-01-11 16:51:41] -rw-------. 1 boincer umatlas        57 Jan 11 03:28 setup.sh.local
[2026-01-11 16:51:41] -rw-------. 1 boincer umatlas    989548 Jan 11 03:28 agis_schedconf.cvmfs.json
[2026-01-11 16:51:41] drwx------. 5 boincer umatlas      4096 Jan 11 03:28 pilot3
[2026-01-11 16:51:41] -rw-r--r--. 1 boincer umatlas      6660 Jan 11 16:49 init_data.xml
[2026-01-11 16:51:41] -rw-------. 1 boincer umatlas 219757243 Jan 11 16:49 HITS.47898826._020636.pool.root.1
[2026-01-11 16:51:41] -rw-r--r--. 1 boincer umatlas       531 Jan 11 16:49 boinc_task_state.xml
[2026-01-11 16:51:41] -rw-------. 1 boincer umatlas      1054 Jan 11 16:50 memory_monitor_summary.json
[2026-01-11 16:51:41] -rw-------. 1 boincer umatlas   1516240 Jan 11 16:50 agis_ddmendpoints.agis.ALL.json
[2026-01-11 16:51:41] -rw-------. 1 boincer umatlas    838627 Jan 11 16:50 log.47898826._020636.job.log.tgz.1
[2026-01-11 16:51:41] -rw-------. 1 boincer umatlas      7841 Jan 11 16:51 heartbeat.json
[2026-01-11 16:51:41] -rw-------. 1 boincer umatlas        95 Jan 11 16:51 pilot_heartbeat.json
[2026-01-11 16:51:41] -rw-------. 1 boincer umatlas       823 Jan 11 16:51 pilotlog.txt
[2026-01-11 16:51:41] -rw-r--r--. 1 boincer umatlas        28 Jan 11 16:51 wrapper_checkpoint.txt
[2026-01-11 16:51:41] -rw-------. 1 boincer umatlas   5424923 Jan 11 16:51 log.47898826._020636.job.log.1
[2026-01-11 16:51:41] -rw-r--r--. 1 boincer umatlas      8192 Jan 11 16:51 boinc_mmap_file
[2026-01-11 16:51:41] -rw-------. 1 boincer umatlas       357 Jan 11 16:51 output.list
[2026-01-11 16:51:41] -rw-r--r--. 1 boincer umatlas       620 Jan 11 16:51 runtime_log
[2026-01-11 16:51:41] -rw-------. 1 boincer umatlas   6287360 Jan 11 16:51 result.tar.gz
[2026-01-11 16:51:41] -rw-r--r--. 1 boincer umatlas      9333 Jan 11 16:51 runtime_log.err
[2026-01-11 16:51:41] -rw-------. 1 boincer umatlas       659 Jan 11 16:51 03lMDmbB0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1gjKDmk9EkHm.diag
[2026-01-11 16:51:41] -rw-r--r--. 1 boincer umatlas     21255 Jan 11 16:51 stderr.txt
[2026-01-11 16:51:41] HITS file was successfully produced:
[2026-01-11 16:51:41] -rw-------. 1 boincer umatlas 219757243 Jan 11 16:49 shared/HITS.pool.root.1
[2026-01-11 16:51:41]  *** Contents of shared directory: ***
[2026-01-11 16:51:41] total 438912
[2026-01-11 16:51:41] -rw-r--r--. 2 boincer umatlas 222779937 Jan 11 03:28 ATLAS.root_0
[2026-01-11 16:51:41] -rw-r--r--. 2 boincer umatlas     15847 Jan 11 03:28 start_atlas.sh
[2026-01-11 16:51:41] -rw-r--r--. 2 boincer umatlas    592397 Jan 11 03:28 input.tar.gz
[2026-01-11 16:51:41] -rw-------. 1 boincer umatlas 219757243 Jan 11 16:49 HITS.pool.root.1
[2026-01-11 16:51:41] -rw-------. 1 boincer umatlas   6287360 Jan 11 16:51 result.tar.gz
16:52:03 (1956055): run_atlas exited; CPU time 73962.147655
16:52:03 (1956055): called boinc_finish(0)

</stderr_txt>
]]>

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