Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:58:15 (3079721): wrapper (7.7.26015): starting
02:58:15 (3079721): wrapper: running run_atlas (--nthreads 9)
[2026-01-11 02:58:15] Arguments: --nthreads 9
[2026-01-11 02:58:15] Threads: 9
[2026-01-11 02:58:15] Checking for CVMFS
[2026-01-11 02:58:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 02:58:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 02:58:16] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 02:58:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 02:58:16] 2.13.3.0 22787 95969 261564 155009 0 530 39154473 40960001 34732 16776704 0 1145404187 99.715 841358043 49932 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-11 02:58:16] CVMFS is ok
[2026-01-11 02:58:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 02:58:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 02:58:16] Further information can be found at the LHC@home message board.
[2026-01-11 02:58:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 02:58:16] Checking for apptainer binary...
[2026-01-11 02:58:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 02:58:16] Running /usr/bin/apptainer --version
[2026-01-11 02:58:16] apptainer version 1.4.5-2.el9
[2026-01-11 02:58:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 02:58:16] c8-6-11.aglt2.org
[2026-01-11 02:58:16] apptainer works
[2026-01-11 02:58:16] Set ATHENA_PROC_NUMBER=9
[2026-01-11 02:58:16] Set ATHENA_CORE_NUMBER=9
[2026-01-11 02:58:16] Starting ATLAS job with PandaID=6966098253
[2026-01-11 02:58:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 04:14:51]  *** The last 200 lines of the pilot log: ***
[2026-01-11 04:14:51]  status=None
[2026-01-11 04:14:51]  status_code=0
[2026-01-11 04:14:51]  storage_token=
[2026-01-11 04:14:51]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6966098253/log.47898826._040781.job.log.tgz.1
[2026-01-11 04:14:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4c/e7/log.47898826._040781.job.log.tgz.1
[2026-01-11 04:14:51]  workdir=None
[2026-01-11 04:14:51] ]
[2026-01-11 04:14:51] 2026-01-11 09:14:10,943 | INFO     | transferring file log.47898826._040781.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6966098253/log.47898826._040781.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-11 04:14:51] 2026-01-11 09:14:10,943 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6966098253/log.47898826._040781.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._040781.job
[2026-01-11 04:14:51] 2026-01-11 09:14:11,054 | INFO     | adding to output.list: log.47898826._040781.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4c/e7/log.47898826._040781.job.log.tg
[2026-01-11 04:14:51] 2026-01-11 09:14:11,054 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 04:14:51] 2026-01-11 09:14:11,054 | INFO     | summary of transferred files:
[2026-01-11 04:14:51] 2026-01-11 09:14:11,054 | INFO     |  -- lfn=log.47898826._040781.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 04:14:51] 2026-01-11 09:14:11,055 | INFO     | stage-out finished correctly
[2026-01-11 04:14:51] 2026-01-11 09:14:11,642 | INFO     | time since job start (4542s) is within the limit (349056.0s)
[2026-01-11 04:14:51] 2026-01-11 09:14:11,643 | INFO     | 4544s have passed since pilot start - server update state is 'RUNNING'
[2026-01-11 04:14:51] 2026-01-11 09:14:12,066 | WARNING  | process 3090812 can no longer be monitored (due to stat problems) - aborting
[2026-01-11 04:14:51] 2026-01-11 09:14:12,066 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6966098253/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 04:14:51] 2026-01-11 09:14:12,462 | INFO     | number of running child processes to parent process 3090812: 1
[2026-01-11 04:14:51] 2026-01-11 09:14:12,462 | INFO     | maximum number of monitored processes: 6
[2026-01-11 04:14:51] 2026-01-11 09:14:13,649 | INFO     | time since job start (4544s) is within the limit (349056.0s)
[2026-01-11 04:14:51] 2026-01-11 09:14:14,243 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 04:14:51] 2026-01-11 09:14:14,565 | INFO     | job 6966098253 has state=finished
[2026-01-11 04:14:51] 2026-01-11 09:14:14,567 | INFO     | preparing for final server update for job 6966098253 in state='finished'
[2026-01-11 04:14:51] 2026-01-11 09:14:14,567 | INFO     | this job has now completed (state=finished)
[2026-01-11 04:14:51] 2026-01-11 09:14:14,567 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 04:14:51] 2026-01-11 09:14:14,567 | INFO     | log transfer has been attempted: DONE
[2026-01-11 04:14:51] 2026-01-11 09:14:14,568 | INFO     | job 6966098253 has finished - writing final server update
[2026-01-11 04:14:51] 2026-01-11 09:14:14,568 | INFO     | total number of processed events: 400 (read)
[2026-01-11 04:14:51] 2026-01-11 09:14:14,569 | INFO     | executing command: lscpu
[2026-01-11 04:14:51] 2026-01-11 09:14:14,623 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 04:14:51] 2026-01-11 09:14:14,965 | INFO     | monitor loop #313: job 0:6966098253 is in state 'finished'
[2026-01-11 04:14:51] 2026-01-11 09:14:14,965 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 04:14:51] 2026-01-11 09:14:15,656 | INFO     | time since job start (4546s) is within the limit (349056.0s)
[2026-01-11 04:14:51] 2026-01-11 09:14:17,468 | INFO     | monitor loop #314: job 0:6966098253 is in state 'finished'
[2026-01-11 04:14:51] 2026-01-11 09:14:17,468 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 04:14:51] 2026-01-11 09:14:17,661 | INFO     | time since job start (4548s) is within the limit (349056.0s)
[2026-01-11 04:14:51] 2026-01-11 09:14:18,606 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-11 04:14:51] 2026-01-11 09:14:18,611 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.0042187500007
[2026-01-11 04:14:51] 2026-01-11 09:14:18,624 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6966098253/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 04:14:51] 2026-01-11 09:14:18,624 | INFO     | extracted standard info from prmon json
[2026-01-11 04:14:51] 2026-01-11 09:14:18,624 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 04:14:51] 2026-01-11 09:14:18,624 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 04:14:51] 2026-01-11 09:14:18,625 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 04:14:51] 2026-01-11 09:14:18,625 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 04:14:51] 2026-01-11 09:14:18,626 | INFO     | fitting pss+swap vs Time
[2026-01-11 04:14:51] 2026-01-11 09:14:18,626 | INFO     | sum of square deviations: 93240818.0
[2026-01-11 04:14:51] 2026-01-11 09:14:18,626 | INFO     | sum of deviations: -6630187600.0
[2026-01-11 04:14:51] 2026-01-11 09:14:18,626 | INFO     | mean x: 1768120657.0
[2026-01-11 04:14:51] 2026-01-11 09:14:18,626 | INFO     | mean y: 2670835.23880597
[2026-01-11 04:14:51] 2026-01-11 09:14:18,626 | INFO     | intersect: 125730564549.6124
[2026-01-11 04:14:51] 2026-01-11 09:14:18,626 | INFO     | chi2: 0.12299642391147896
[2026-01-11 04:14:51] 2026-01-11 09:14:18,626 | INFO     | current memory leak: -71.11 B/s (using 67 data points, chi2=0.12)
[2026-01-11 04:14:51] 2026-01-11 09:14:18,627 | INFO     | could have reported an average CPU frequency of 3800 MHz (6 samples)
[2026-01-11 04:14:51] 2026-01-11 09:14:18,627 | INFO     | ..............................
[2026-01-11 04:14:51] 2026-01-11 09:14:18,627 | INFO     | . Timing measurements:
[2026-01-11 04:14:51] 2026-01-11 09:14:18,627 | INFO     | . get job = 0 s
[2026-01-11 04:14:51] 2026-01-11 09:14:18,627 | INFO     | . initial setup = 2 s
[2026-01-11 04:14:51] 2026-01-11 09:14:18,627 | INFO     | . payload setup = 6 s
[2026-01-11 04:14:51] 2026-01-11 09:14:18,627 | INFO     | . stage-in = 0 s
[2026-01-11 04:14:51] 2026-01-11 09:14:18,627 | INFO     | . payload execution = 4515 s
[2026-01-11 04:14:51] 2026-01-11 09:14:18,627 | INFO     | . stage-out = 0 s
[2026-01-11 04:14:51] 2026-01-11 09:14:18,627 | INFO     | . log creation = 0 s
[2026-01-11 04:14:51] 2026-01-11 09:14:18,627 | INFO     | ..............................
[2026-01-11 04:14:51] 2026-01-11 09:14:18,678 | INFO     | 
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | job summary report
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | --------------------------------------------------
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | PanDA job id: 6966098253
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | task id: 47898826
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | errors: (none)
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | pilot state: finished 
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | transexitcode: 0
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | exeerrorcode: 0
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | exeerrordiag: 
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | exitcode: 0
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | exitmsg: OK
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | cpuconsumptiontime: 29952 s
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | nevents: 400
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | neventsw: 0
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | pid: 3090812
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | pgrp: 3090812
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | corecount: 9
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | event service: False
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | sizes: {0: 2283916, 6: 2284178, 11: 2284206, 4525: 2310442, 4526: 2319440, 4529: 2319496, 4534: 2319818}
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | --------------------------------------------------
[2026-01-11 04:14:51] 2026-01-11 09:14:18,679 | INFO     | 
[2026-01-11 04:14:51] 2026-01-11 09:14:18,680 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-11 04:14:51] 2026-01-11 09:14:18,696 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,696 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,696 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,696 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,696 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,696 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,696 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,696 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,696 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,696 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,696 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,696 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,696 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,696 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,696 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,696 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,696 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,697 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 04:14:51] 2026-01-11 09:14:18,697 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,697 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 04:14:51] 2026-01-11 09:14:18,697 | INFO     | job 6966098253 has completed (purged errors)
[2026-01-11 04:14:51] 2026-01-11 09:14:18,697 | INFO     | overall cleanup function is called
[2026-01-11 04:14:51] 2026-01-11 09:14:19,704 | INFO     | --- collectZombieJob: --- 10, [3090812]
[2026-01-11 04:14:51] 2026-01-11 09:14:19,704 | INFO     | zombie collector waiting for pid 3090812
[2026-01-11 04:14:51] 2026-01-11 09:14:19,704 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 04:14:51] 2026-01-11 09:14:19,704 | INFO     | collected zombie processes
[2026-01-11 04:14:51] 2026-01-11 09:14:19,704 | INFO     | will attempt to kill all subprocesses of pid=3090812
[2026-01-11 04:14:51] 2026-01-11 09:14:20,138 | INFO     | process IDs to be killed: [3090812] (in reverse order)
[2026-01-11 04:14:51] 2026-01-11 09:14:20,306 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 04:14:51] 2026-01-11 09:14:20,307 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 04:14:51] 2026-01-11 09:14:20,332 | INFO     | did not find any defunct processes belonging to 3090812
[2026-01-11 04:14:51] 2026-01-11 09:14:20,357 | INFO     | did not find any defunct processes belonging to 3090812
[2026-01-11 04:14:51] 2026-01-11 09:14:20,357 | INFO     | ready for new job
[2026-01-11 04:14:51] 2026-01-11 09:14:20,357 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 04:14:51] 2026-01-11 09:14:20,358 | INFO     | ***************************************
[2026-01-11 04:14:51] 2026-01-11 09:14:20,358 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 04:14:51] 2026-01-11 09:14:20,358 | INFO     | ***************************************
[2026-01-11 04:14:51] 2026-01-11 09:14:20,358 | INFO     | 
[2026-01-11 04:14:51] 2026-01-11 09:14:20,363 | INFO     | architecture information:
[2026-01-11 04:14:51] 2026-01-11 09:14:20,364 | INFO     | executing command: cat /etc/os-release
[2026-01-11 04:14:51] 2026-01-11 09:14:20,379 | INFO     | cat /etc/os-release:
[2026-01-11 04:14:51] NAME="CentOS Linux"
[2026-01-11 04:14:51] VERSION="7 (Core)"
[2026-01-11 04:14:51] ID="centos"
[2026-01-11 04:14:51] ID_LIKE="rhel fedora"
[2026-01-11 04:14:51] VERSION_ID="7"
[2026-01-11 04:14:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 04:14:51] ANSI_COLOR="0;31"
[2026-01-11 04:14:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 04:14:51] HOME_URL="https://www.centos.org/"
[2026-01-11 04:14:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 04:14:51] 
[2026-01-11 04:14:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 04:14:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 04:14:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 04:14:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 04:14:51] 
[2026-01-11 04:14:51] 2026-01-11 09:14:20,379 | INFO     | ***************************************
[2026-01-11 04:14:51] 2026-01-11 09:14:20,882 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-11 04:14:51] 2026-01-11 09:14:20,897 | INFO     | sufficient remaining disk space (173652574208 B)
[2026-01-11 04:14:51] 2026-01-11 09:14:20,897 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 04:14:51] 2026-01-11 09:14:20,897 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 04:14:51] 2026-01-11 09:14:20,897 | INFO     | update_server=False
[2026-01-11 04:14:51] 2026-01-11 09:14:20,897 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 04:14:51] 2026-01-11 09:14:20,898 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 04:14:51] 2026-01-11 09:14:20,981 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 04:14:51] 2026-01-11 09:14:20,981 | INFO     | aborting loop
[2026-01-11 04:14:51] 2026-01-11 09:14:21,207 | INFO     | all data control threads have been joined
[2026-01-11 04:14:51] 2026-01-11 09:14:21,426 | INFO     | all job control threads have been joined
[2026-01-11 04:14:51] 2026-01-11 09:14:21,623 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 04:14:51] 2026-01-11 09:14:21,744 | INFO     | all payload control threads have been joined
[2026-01-11 04:14:51] 2026-01-11 09:14:21,903 | INFO     | [job] retrieve thread has finished
[2026-01-11 04:14:51] 2026-01-11 09:14:21,986 | INFO     | [job] job monitor thread has finished
[2026-01-11 04:14:51] 2026-01-11 09:14:22,213 | INFO     | [data] control thread has finished
[2026-01-11 04:14:51] 2026-01-11 09:14:22,270 | INFO     | [data] copytool_in thread has finished
[2026-01-11 04:14:51] 2026-01-11 09:14:22,294 | INFO     | [job] validate thread has finished
[2026-01-11 04:14:51] 2026-01-11 09:14:22,343 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 04:14:51] 2026-01-11 09:14:22,431 | INFO     | [job] control thread has finished
[2026-01-11 04:14:51] 2026-01-11 09:14:22,617 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 04:14:51] 2026-01-11 09:14:22,624 | INFO     | [payload] validate_post thread has finished
[2026-01-11 04:14:51] 2026-01-11 09:14:22,749 | INFO     | [payload] control thread has finished
[2026-01-11 04:14:51] 2026-01-11 09:14:22,965 | INFO     | [payload] failed_post thread has finished
[2026-01-11 04:14:51] 2026-01-11 09:14:23,361 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 04:14:51] 2026-01-11 09:14:23,629 | INFO     | [data] copytool_out thread has finished
[2026-01-11 04:14:51] 2026-01-11 09:14:23,691 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 04:14:51] 2026-01-11 09:14:24,696 | INFO     | [job] queue monitor thread has finished
[2026-01-11 04:14:51] 2026-01-11 09:14:24,903 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 04:14:51] 2026-01-11 09:14:31,248 | INFO     | job.realtimelogging is not enabled
[2026-01-11 04:14:51] 2026-01-11 09:14:32,254 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 04:14:51] 2026-01-11 09:14:36,637 | INFO     | [monitor] cgroup control has ended
[2026-01-11 04:14:51] 2026-01-11 09:14:37,644 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140398860986176)>', '<ExcThread(monitor, started 140398345299712)>']
[2026-01-11 04:14:51] 2026-01-11 09:14:42,669 | INFO     | all workflow threads have been joined
[2026-01-11 04:14:51] 2026-01-11 09:14:42,669 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 04:14:51] 2026-01-11 09:14:42,669 | INFO     | traces error code: 0
[2026-01-11 04:14:51] 2026-01-11 09:14:42,669 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 04:14:51] 2026-01-11 09:14:51,286 | INFO     | PID=3083549 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 04:14:51] 2026-01-11 09:14:51,286 | INFO     | .. there are 37 such processes running
[2026-01-11 04:14:51] 2026-01-11 09:14:51,286 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 04:14:51] 2026-01-11 09:14:51,287 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 04:14:51] 2026-01-11 09:14:51,287 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 04:14:51] 2026-01-11 09:14:51,287 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 04:14:51] 2026-01-11 09:14:51,287 | INFO     | [monitor] control thread has ended
[2026-01-11 04:14:51] 2026-01-11 09:14:51,390 [wrapper] ==== pilot stdout END ====
[2026-01-11 04:14:51] 2026-01-11 09:14:51,393 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 04:14:51] 2026-01-11 09:14:51,395 [wrapper] pilotpid: 3083549
[2026-01-11 04:14:51] 2026-01-11 09:14:51,397 [wrapper] Pilot exit status: 0
[2026-01-11 04:14:51] 2026-01-11 09:14:51,407 [wrapper] pandaids: 6966098253
[2026-01-11 04:14:51] 2026-01-11 09:14:51,516 [wrapper] cleanup supervisor_pilot 3410981 3083550
[2026-01-11 04:14:51] 2026-01-11 09:14:51,519 [wrapper] Test setup, not cleaning
[2026-01-11 04:14:51] 2026-01-11 09:14:51,521 [wrapper] apfmon messages muted
[2026-01-11 04:14:51] 2026-01-11 09:14:51,525 [wrapper] ==== wrapper stdout END ====
[2026-01-11 04:14:51] 2026-01-11 09:14:51,527 [wrapper] ==== wrapper stderr END ====
[2026-01-11 04:14:51]  *** Error codes and diagnostics ***
[2026-01-11 04:14:51]     "exeErrorCode": 0,
[2026-01-11 04:14:51]     "exeErrorDiag": "",
[2026-01-11 04:14:51]     "pilotErrorCode": 0,
[2026-01-11 04:14:51]     "pilotErrorDiag": "",
[2026-01-11 04:14:51]  *** Listing of results directory ***
[2026-01-11 04:14:51] total 437544
[2026-01-11 04:14:51] -rw-r--r--. 1 boincer umatlas    579449 Jan 11 02:26 pilot3.tar.gz
[2026-01-11 04:14:51] -rwx------. 1 boincer umatlas     36322 Jan 11 02:57 runpilot2-wrapper.sh
[2026-01-11 04:14:51] -rw-r--r--. 1 boincer umatlas      5112 Jan 11 02:57 queuedata.json
[2026-01-11 04:14:51] -rw-r--r--. 1 boincer umatlas       100 Jan 11 02:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 04:14:51] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 11 02:58 run_atlas
[2026-01-11 04:14:51] -rw-r--r--. 1 boincer umatlas       105 Jan 11 02:58 job.xml
[2026-01-11 04:14:51] -rw-r--r--. 2 boincer umatlas 225651727 Jan 11 02:58 EVNT.47898824._001105.pool.root.1
[2026-01-11 04:14:51] -rw-r--r--. 2 boincer umatlas     15847 Jan 11 02:58 start_atlas.sh
[2026-01-11 04:14:51] drwxrwx--x. 2 boincer umatlas      4096 Jan 11 02:58 shared
[2026-01-11 04:14:51] -rw-r--r--. 2 boincer umatlas    592399 Jan 11 02:58 input.tar.gz
[2026-01-11 04:14:51] -rw-r--r--. 1 boincer umatlas         0 Jan 11 02:58 boinc_lockfile
[2026-01-11 04:14:51] -rw-r--r--. 1 boincer umatlas      2516 Jan 11 02:58 pandaJob.out
[2026-01-11 04:14:51] -rw-------. 1 boincer umatlas        57 Jan 11 02:58 setup.sh.local
[2026-01-11 04:14:51] -rw-------. 1 boincer umatlas    989548 Jan 11 02:58 agis_schedconf.cvmfs.json
[2026-01-11 04:14:51] -rw-------. 1 boincer umatlas   1516240 Jan 11 02:58 agis_ddmendpoints.agis.ALL.json
[2026-01-11 04:14:51] drwx------. 5 boincer umatlas      4096 Jan 11 02:58 pilot3
[2026-01-11 04:14:51] -rw-r--r--. 1 boincer umatlas       530 Jan 11 04:13 boinc_task_state.xml
[2026-01-11 04:14:51] -rw-------. 1 boincer umatlas 216517639 Jan 11 04:13 HITS.47898826._040781.pool.root.1
[2026-01-11 04:14:51] -rw-r--r--. 1 boincer umatlas      7172 Jan 11 04:13 init_data.xml
[2026-01-11 04:14:51] -rw-------. 1 boincer umatlas      1030 Jan 11 04:14 memory_monitor_summary.json
[2026-01-11 04:14:51] -rw-------. 1 boincer umatlas    327330 Jan 11 04:14 log.47898826._040781.job.log.tgz.1
[2026-01-11 04:14:51] -rw-------. 1 boincer umatlas      7768 Jan 11 04:14 heartbeat.json
[2026-01-11 04:14:51] -rw-r--r--. 1 boincer umatlas        27 Jan 11 04:14 wrapper_checkpoint.txt
[2026-01-11 04:14:51] -rw-r--r--. 1 boincer umatlas      8192 Jan 11 04:14 boinc_mmap_file
[2026-01-11 04:14:51] -rw-------. 1 boincer umatlas        95 Jan 11 04:14 pilot_heartbeat.json
[2026-01-11 04:14:51] -rw-------. 1 boincer umatlas       823 Jan 11 04:14 pilotlog.txt
[2026-01-11 04:14:51] -rw-------. 1 boincer umatlas    659088 Jan 11 04:14 log.47898826._040781.job.log.1
[2026-01-11 04:14:51] -rw-------. 1 boincer umatlas       357 Jan 11 04:14 output.list
[2026-01-11 04:14:51] -rw-r--r--. 1 boincer umatlas       620 Jan 11 04:14 runtime_log
[2026-01-11 04:14:51] -rw-------. 1 boincer umatlas   1003520 Jan 11 04:14 result.tar.gz
[2026-01-11 04:14:51] -rw-r--r--. 1 boincer umatlas      9337 Jan 11 04:14 runtime_log.err
[2026-01-11 04:14:51] -rw-------. 1 boincer umatlas       651 Jan 11 04:14 hT4KDmmV5y8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmv0mKDm2b0UHo.diag
[2026-01-11 04:14:51] -rw-r--r--. 1 boincer umatlas     22075 Jan 11 04:14 stderr.txt
[2026-01-11 04:14:51] HITS file was successfully produced:
[2026-01-11 04:14:51] -rw-------. 1 boincer umatlas 216517639 Jan 11 04:13 shared/HITS.pool.root.1
[2026-01-11 04:14:51]  *** Contents of shared directory: ***
[2026-01-11 04:14:51] total 433388
[2026-01-11 04:14:51] -rw-r--r--. 2 boincer umatlas 225651727 Jan 11 02:58 ATLAS.root_0
[2026-01-11 04:14:51] -rw-r--r--. 2 boincer umatlas     15847 Jan 11 02:58 start_atlas.sh
[2026-01-11 04:14:51] -rw-r--r--. 2 boincer umatlas    592399 Jan 11 02:58 input.tar.gz
[2026-01-11 04:14:51] -rw-------. 1 boincer umatlas 216517639 Jan 11 04:13 HITS.pool.root.1
[2026-01-11 04:14:51] -rw-------. 1 boincer umatlas   1003520 Jan 11 04:14 result.tar.gz
04:14:52 (3079721): run_atlas exited; CPU time 30049.478554
04:14:52 (3079721): called boinc_finish(0)

</stderr_txt>
]]>

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