Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:31:02 (609614): wrapper (7.7.26015): starting
00:31:02 (609614): wrapper: running run_atlas (--nthreads 11)
[2026-01-11 00:31:02] Arguments: --nthreads 11
[2026-01-11 00:31:02] Threads: 11
[2026-01-11 00:31:02] Checking for CVMFS
[2026-01-11 00:31:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 00:31:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 00:31:02] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 00:31:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 00:31:02] 2.13.3.0 17216 95737 412892 155006 2 666 23832484 32935937 32720 16776704 0 1357961711 99.634 1322002954 49960 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-11 00:31:02] CVMFS is ok
[2026-01-11 00:31:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 00:31:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 00:31:02] Further information can be found at the LHC@home message board.
[2026-01-11 00:31:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 00:31:02] Checking for apptainer binary...
[2026-01-11 00:31:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 00:31:02] Running /usr/bin/apptainer --version
[2026-01-11 00:31:02] apptainer version 1.4.5-2.el9
[2026-01-11 00:31:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 00:31:02] c7-9-14.aglt2.org
[2026-01-11 00:31:02] apptainer works
[2026-01-11 00:31:02] Set ATHENA_PROC_NUMBER=11
[2026-01-11 00:31:02] Set ATHENA_CORE_NUMBER=11
[2026-01-11 00:31:02] Starting ATLAS job with PandaID=6965940972
[2026-01-11 00:31:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 00:49:32]  *** The last 200 lines of the pilot log: ***
[2026-01-11 00:49:32]  replicas=None
[2026-01-11 00:49:32]  scope=mc16_13TeV
[2026-01-11 00:49:32]  status=None
[2026-01-11 00:49:32]  status_code=0
[2026-01-11 00:49:32]  storage_token=
[2026-01-11 00:49:32]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6965940972/log.47962010._002952.job.log.tgz.1
[2026-01-11 00:49:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/68/af/log.47962010._002952.job.log.tgz.1
[2026-01-11 00:49:32]  workdir=None
[2026-01-11 00:49:32] ]
[2026-01-11 00:49:32] 2026-01-11 05:48:49,972 | INFO     | transferring file log.47962010._002952.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6965940972/log.47962010._002952.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-11 00:49:32] 2026-01-11 05:48:49,972 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6965940972/log.47962010._002952.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._002952.job
[2026-01-11 00:49:32] 2026-01-11 05:48:50,020 | INFO     | adding to output.list: log.47962010._002952.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/68/af/log.47962010._002952.job.log.tgz.
[2026-01-11 00:49:32] 2026-01-11 05:48:50,020 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 00:49:32] 2026-01-11 05:48:50,020 | INFO     | summary of transferred files:
[2026-01-11 00:49:32] 2026-01-11 05:48:50,020 | INFO     |  -- lfn=log.47962010._002952.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 00:49:32] 2026-01-11 05:48:50,020 | INFO     | stage-out finished correctly
[2026-01-11 00:49:32] 2026-01-11 05:48:50,089 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 00:49:32] 2026-01-11 05:48:50,170 | INFO     | job 6965940972 has state=finished
[2026-01-11 00:49:32] 2026-01-11 05:48:50,171 | INFO     | preparing for final server update for job 6965940972 in state='finished'
[2026-01-11 00:49:32] 2026-01-11 05:48:50,208 | INFO     | time since job start (1058s) is within the limit (349056.0s)
[2026-01-11 00:49:32] 2026-01-11 05:48:50,249 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-11 00:49:32] 2026-01-11 05:48:50,249 | INFO     | this job has now completed (state=finished)
[2026-01-11 00:49:32] 2026-01-11 05:48:50,249 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 00:49:32] 2026-01-11 05:48:50,249 | INFO     | log transfer has been attempted: DONE
[2026-01-11 00:49:32] 2026-01-11 05:48:50,249 | INFO     | job 6965940972 has finished - writing final server update
[2026-01-11 00:49:32] 2026-01-11 05:48:50,249 | INFO     | total number of processed events: 50 (read)
[2026-01-11 00:49:32] 2026-01-11 05:48:50,261 | INFO     | executing command: lscpu
[2026-01-11 00:49:32] 2026-01-11 05:48:50,422 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 00:49:32] 2026-01-11 05:48:51,974 | WARNING  | process 622529 can no longer be monitored (due to stat problems) - aborting
[2026-01-11 00:49:32] 2026-01-11 05:48:51,974 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965940972/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 00:49:32] 2026-01-11 05:48:52,215 | INFO     | time since job start (1060s) is within the limit (349056.0s)
[2026-01-11 00:49:32] 2026-01-11 05:48:52,340 | INFO     | number of running child processes to parent process 622529: 1
[2026-01-11 00:49:32] 2026-01-11 05:48:52,340 | INFO     | maximum number of monitored processes: 19
[2026-01-11 00:49:32] 2026-01-11 05:48:54,222 | INFO     | time since job start (1062s) is within the limit (349056.0s)
[2026-01-11 00:49:32] 2026-01-11 05:48:54,845 | INFO     | monitor loop #80: job 0:6965940972 is in state 'finished'
[2026-01-11 00:49:32] 2026-01-11 05:48:54,845 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 00:49:32] 2026-01-11 05:48:56,229 | INFO     | time since job start (1064s) is within the limit (349056.0s)
[2026-01-11 00:49:32] 2026-01-11 05:48:57,349 | INFO     | monitor loop #81: job 0:6965940972 is in state 'finished'
[2026-01-11 00:49:32] 2026-01-11 05:48:57,349 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 00:49:32] 2026-01-11 05:48:58,235 | INFO     | time since job start (1066s) is within the limit (349056.0s)
[2026-01-11 00:49:32] 2026-01-11 05:48:58,891 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-11 00:49:32] 2026-01-11 05:48:58,895 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.2019218750015
[2026-01-11 00:49:32] 2026-01-11 05:48:58,907 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965940972/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 00:49:32] 2026-01-11 05:48:58,908 | INFO     | extracted standard info from prmon json
[2026-01-11 00:49:32] 2026-01-11 05:48:58,908 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 00:49:32] 2026-01-11 05:48:58,908 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 00:49:32] 2026-01-11 05:48:58,908 | INFO     | fitting pss+swap vs Time
[2026-01-11 00:49:32] 2026-01-11 05:48:58,908 | INFO     | sum of square deviations: 306496.89999999997
[2026-01-11 00:49:32] 2026-01-11 05:48:58,909 | INFO     | sum of deviations: -59906350.80000001
[2026-01-11 00:49:32] 2026-01-11 05:48:58,909 | INFO     | mean x: 1768110077.1
[2026-01-11 00:49:32] 2026-01-11 05:48:58,909 | INFO     | mean y: 3098731.8
[2026-01-11 00:49:32] 2026-01-11 05:48:58,909 | INFO     | intersect: 345589049296.93677
[2026-01-11 00:49:32] 2026-01-11 05:48:58,909 | INFO     | chi2: 0.032758223665474075
[2026-01-11 00:49:32] 2026-01-11 05:48:58,909 | INFO     | current memory leak: -195.45 B/s (using 10 data points, chi2=0.03)
[2026-01-11 00:49:32] 2026-01-11 05:48:58,909 | INFO     | could have reported an average CPU frequency of 3796 MHz (4 samples)
[2026-01-11 00:49:32] 2026-01-11 05:48:58,909 | INFO     | ..............................
[2026-01-11 00:49:32] 2026-01-11 05:48:58,909 | INFO     | . Timing measurements:
[2026-01-11 00:49:32] 2026-01-11 05:48:58,909 | INFO     | . get job = 0 s
[2026-01-11 00:49:32] 2026-01-11 05:48:58,909 | INFO     | . initial setup = 2 s
[2026-01-11 00:49:32] 2026-01-11 05:48:58,909 | INFO     | . payload setup = 5 s
[2026-01-11 00:49:32] 2026-01-11 05:48:58,910 | INFO     | . stage-in = 0 s
[2026-01-11 00:49:32] 2026-01-11 05:48:58,910 | INFO     | . payload execution = 1032 s
[2026-01-11 00:49:32] 2026-01-11 05:48:58,910 | INFO     | . stage-out = 0 s
[2026-01-11 00:49:32] 2026-01-11 05:48:58,910 | INFO     | . log creation = 0 s
[2026-01-11 00:49:32] 2026-01-11 05:48:58,910 | INFO     | ..............................
[2026-01-11 00:49:32] 2026-01-11 05:48:58,961 | INFO     | 
[2026-01-11 00:49:32] 2026-01-11 05:48:58,961 | INFO     | job summary report
[2026-01-11 00:49:32] 2026-01-11 05:48:58,961 | INFO     | --------------------------------------------------
[2026-01-11 00:49:32] 2026-01-11 05:48:58,961 | INFO     | PanDA job id: 6965940972
[2026-01-11 00:49:32] 2026-01-11 05:48:58,961 | INFO     | task id: 47962010
[2026-01-11 00:49:32] 2026-01-11 05:48:58,961 | INFO     | errors: (none)
[2026-01-11 00:49:32] 2026-01-11 05:48:58,961 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 00:49:32] 2026-01-11 05:48:58,962 | INFO     | pilot state: finished 
[2026-01-11 00:49:32] 2026-01-11 05:48:58,962 | INFO     | transexitcode: 0
[2026-01-11 00:49:32] 2026-01-11 05:48:58,962 | INFO     | exeerrorcode: 0
[2026-01-11 00:49:32] 2026-01-11 05:48:58,962 | INFO     | exeerrordiag: 
[2026-01-11 00:49:32] 2026-01-11 05:48:58,962 | INFO     | exitcode: 0
[2026-01-11 00:49:32] 2026-01-11 05:48:58,962 | INFO     | exitmsg: OK
[2026-01-11 00:49:32] 2026-01-11 05:48:58,962 | INFO     | cpuconsumptiontime: 7247 s
[2026-01-11 00:49:32] 2026-01-11 05:48:58,962 | INFO     | nevents: 50
[2026-01-11 00:49:32] 2026-01-11 05:48:58,962 | INFO     | neventsw: 0
[2026-01-11 00:49:32] 2026-01-11 05:48:58,962 | INFO     | pid: 622529
[2026-01-11 00:49:32] 2026-01-11 05:48:58,962 | INFO     | pgrp: 622529
[2026-01-11 00:49:32] 2026-01-11 05:48:58,962 | INFO     | corecount: 11
[2026-01-11 00:49:32] 2026-01-11 05:48:58,962 | INFO     | event service: False
[2026-01-11 00:49:32] 2026-01-11 05:48:58,962 | INFO     | sizes: {0: 2284568, 4: 2284830, 11: 2284858, 1041: 2310103, 1043: 2319153, 1052: 2319343}
[2026-01-11 00:49:32] 2026-01-11 05:48:58,962 | INFO     | --------------------------------------------------
[2026-01-11 00:49:32] 2026-01-11 05:48:58,962 | INFO     | 
[2026-01-11 00:49:32] 2026-01-11 05:48:58,962 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-11 00:49:32] 2026-01-11 05:48:58,980 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | job 6965940972 has completed (purged errors)
[2026-01-11 00:49:32] 2026-01-11 05:48:58,981 | INFO     | overall cleanup function is called
[2026-01-11 00:49:32] 2026-01-11 05:48:59,996 | INFO     | --- collectZombieJob: --- 10, [622529]
[2026-01-11 00:49:32] 2026-01-11 05:48:59,996 | INFO     | zombie collector waiting for pid 622529
[2026-01-11 00:49:32] 2026-01-11 05:48:59,997 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 00:49:32] 2026-01-11 05:48:59,997 | INFO     | collected zombie processes
[2026-01-11 00:49:32] 2026-01-11 05:48:59,997 | INFO     | will attempt to kill all subprocesses of pid=622529
[2026-01-11 00:49:32] 2026-01-11 05:49:00,396 | INFO     | process IDs to be killed: [622529] (in reverse order)
[2026-01-11 00:49:32] 2026-01-11 05:49:00,544 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 00:49:32] 2026-01-11 05:49:00,544 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 00:49:32] 2026-01-11 05:49:00,564 | INFO     | did not find any defunct processes belonging to 622529
[2026-01-11 00:49:32] 2026-01-11 05:49:00,584 | INFO     | did not find any defunct processes belonging to 622529
[2026-01-11 00:49:32] 2026-01-11 05:49:00,584 | INFO     | ready for new job
[2026-01-11 00:49:32] 2026-01-11 05:49:00,584 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 00:49:32] 2026-01-11 05:49:00,585 | INFO     | ***************************************
[2026-01-11 00:49:32] 2026-01-11 05:49:00,585 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 00:49:32] 2026-01-11 05:49:00,585 | INFO     | ***************************************
[2026-01-11 00:49:32] 2026-01-11 05:49:00,585 | INFO     | 
[2026-01-11 00:49:32] 2026-01-11 05:49:00,590 | INFO     | architecture information:
[2026-01-11 00:49:32] 2026-01-11 05:49:00,590 | INFO     | executing command: cat /etc/os-release
[2026-01-11 00:49:32] 2026-01-11 05:49:00,608 | INFO     | cat /etc/os-release:
[2026-01-11 00:49:32] NAME="CentOS Linux"
[2026-01-11 00:49:32] VERSION="7 (Core)"
[2026-01-11 00:49:32] ID="centos"
[2026-01-11 00:49:32] ID_LIKE="rhel fedora"
[2026-01-11 00:49:32] VERSION_ID="7"
[2026-01-11 00:49:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 00:49:32] ANSI_COLOR="0;31"
[2026-01-11 00:49:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 00:49:32] HOME_URL="https://www.centos.org/"
[2026-01-11 00:49:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 00:49:32] 
[2026-01-11 00:49:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 00:49:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 00:49:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 00:49:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 00:49:32] 
[2026-01-11 00:49:32] 2026-01-11 05:49:00,609 | INFO     | ***************************************
[2026-01-11 00:49:32] 2026-01-11 05:49:01,112 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-11 00:49:32] 2026-01-11 05:49:01,128 | INFO     | sufficient remaining disk space (76380372992 B)
[2026-01-11 00:49:32] 2026-01-11 05:49:01,129 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 00:49:32] 2026-01-11 05:49:01,129 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 00:49:32] 2026-01-11 05:49:01,129 | INFO     | update_server=False
[2026-01-11 00:49:32] 2026-01-11 05:49:01,129 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 00:49:32] 2026-01-11 05:49:01,129 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 00:49:32] 2026-01-11 05:49:01,129 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 00:49:32] 2026-01-11 05:49:01,129 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 00:49:32] 2026-01-11 05:49:01,129 | INFO     | aborting loop
[2026-01-11 00:49:32] 2026-01-11 05:49:01,720 | INFO     | all payload control threads have been joined
[2026-01-11 00:49:32] 2026-01-11 05:49:01,845 | INFO     | all data control threads have been joined
[2026-01-11 00:49:32] 2026-01-11 05:49:02,134 | INFO     | [job] retrieve thread has finished
[2026-01-11 00:49:32] 2026-01-11 05:49:02,135 | INFO     | [job] job monitor thread has finished
[2026-01-11 00:49:32] 2026-01-11 05:49:02,324 | INFO     | [payload] validate_post thread has finished
[2026-01-11 00:49:32] 2026-01-11 05:49:02,337 | INFO     | [job] validate thread has finished
[2026-01-11 00:49:32] 2026-01-11 05:49:02,501 | INFO     | all job control threads have been joined
[2026-01-11 00:49:32] 2026-01-11 05:49:02,580 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 00:49:32] 2026-01-11 05:49:02,697 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 00:49:32] 2026-01-11 05:49:02,725 | INFO     | [payload] control thread has finished
[2026-01-11 00:49:32] 2026-01-11 05:49:02,850 | INFO     | [data] control thread has finished
[2026-01-11 00:49:32] 2026-01-11 05:49:02,992 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 00:49:32] 2026-01-11 05:49:03,104 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 00:49:32] 2026-01-11 05:49:03,138 | INFO     | [data] copytool_out thread has finished
[2026-01-11 00:49:32] 2026-01-11 05:49:03,282 | INFO     | [data] copytool_in thread has finished
[2026-01-11 00:49:32] 2026-01-11 05:49:03,448 | INFO     | [payload] failed_post thread has finished
[2026-01-11 00:49:32] 2026-01-11 05:49:03,506 | INFO     | [job] control thread has finished
[2026-01-11 00:49:32] 2026-01-11 05:49:03,973 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 00:49:32] 2026-01-11 05:49:04,979 | INFO     | [job] queue monitor thread has finished
[2026-01-11 00:49:32] 2026-01-11 05:49:05,137 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 00:49:32] 2026-01-11 05:49:14,160 | INFO     | [monitor] cgroup control has ended
[2026-01-11 00:49:32] 2026-01-11 05:49:15,675 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140093778814784)>', '<ExcThread(monitor, started 140093268403968)>']
[2026-01-11 00:49:32] 2026-01-11 05:49:20,702 | INFO     | all workflow threads have been joined
[2026-01-11 00:49:32] 2026-01-11 05:49:20,702 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 00:49:32] 2026-01-11 05:49:20,703 | INFO     | traces error code: 0
[2026-01-11 00:49:32] 2026-01-11 05:49:20,703 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 00:49:32] 2026-01-11 05:49:31,730 | INFO     | PID=615172 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 00:49:32] 2026-01-11 05:49:31,730 | INFO     | .. there are 37 such processes running
[2026-01-11 00:49:32] 2026-01-11 05:49:31,731 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 00:49:32] 2026-01-11 05:49:31,731 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 00:49:32] 2026-01-11 05:49:31,731 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 00:49:32] 2026-01-11 05:49:31,731 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 00:49:32] 2026-01-11 05:49:31,731 | INFO     | [monitor] control thread has ended
[2026-01-11 00:49:32] 2026-01-11 05:49:31,908 [wrapper] ==== pilot stdout END ====
[2026-01-11 00:49:32] 2026-01-11 05:49:31,923 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 00:49:32] 2026-01-11 05:49:31,945 [wrapper] pilotpid: 615172
[2026-01-11 00:49:32] 2026-01-11 05:49:31,976 [wrapper] Pilot exit status: 0
[2026-01-11 00:49:32] 2026-01-11 05:49:32,090 [wrapper] pandaids: 6965940972
[2026-01-11 00:49:32] 2026-01-11 05:49:32,385 [wrapper] cleanup supervisor_pilot  715864 615173
[2026-01-11 00:49:32] 2026-01-11 05:49:32,410 [wrapper] Test setup, not cleaning
[2026-01-11 00:49:32] 2026-01-11 05:49:32,413 [wrapper] apfmon messages muted
[2026-01-11 00:49:32] 2026-01-11 05:49:32,416 [wrapper] ==== wrapper stdout END ====
[2026-01-11 00:49:32] 2026-01-11 05:49:32,418 [wrapper] ==== wrapper stderr END ====
[2026-01-11 00:49:32]  *** Error codes and diagnostics ***
[2026-01-11 00:49:32]     "exeErrorCode": 0,
[2026-01-11 00:49:32]     "exeErrorDiag": "",
[2026-01-11 00:49:32]     "pilotErrorCode": 0,
[2026-01-11 00:49:32]     "pilotErrorDiag": "",
[2026-01-11 00:49:32]  *** Listing of results directory ***
[2026-01-11 00:49:32] total 429776
[2026-01-11 00:49:32] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 22:29 pilot3.tar.gz
[2026-01-11 00:49:32] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 22:31 queuedata.json
[2026-01-11 00:49:32] -rwx------. 1 boincer umatlas     36322 Jan 10 22:32 runpilot2-wrapper.sh
[2026-01-11 00:49:32] -rw-r--r--. 1 boincer umatlas       100 Jan 11 00:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 00:49:32] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 11 00:31 run_atlas
[2026-01-11 00:49:32] -rw-r--r--. 1 boincer umatlas       105 Jan 11 00:31 job.xml
[2026-01-11 00:49:32] -rw-r--r--. 2 boincer umatlas 391445701 Jan 11 00:31 EVNT.47962006._000033.pool.root.1
[2026-01-11 00:49:32] -rw-r--r--. 2 boincer umatlas     15847 Jan 11 00:31 start_atlas.sh
[2026-01-11 00:49:32] drwxrwx--x. 2 boincer umatlas      4096 Jan 11 00:31 shared
[2026-01-11 00:49:32] -rw-r--r--. 2 boincer umatlas    592613 Jan 11 00:31 input.tar.gz
[2026-01-11 00:49:32] -rw-r--r--. 1 boincer umatlas         0 Jan 11 00:31 boinc_lockfile
[2026-01-11 00:49:32] -rw-r--r--. 1 boincer umatlas      2889 Jan 11 00:31 pandaJob.out
[2026-01-11 00:49:32] -rw-------. 1 boincer umatlas        57 Jan 11 00:31 setup.sh.local
[2026-01-11 00:49:32] -rw-------. 1 boincer umatlas    989548 Jan 11 00:31 agis_schedconf.cvmfs.json
[2026-01-11 00:49:32] -rw-------. 1 boincer umatlas   1516240 Jan 11 00:31 agis_ddmendpoints.agis.ALL.json
[2026-01-11 00:49:32] drwx------. 5 boincer umatlas      4096 Jan 11 00:31 pilot3
[2026-01-11 00:49:32] -rw-r--r--. 1 boincer umatlas       527 Jan 11 00:44 boinc_task_state.xml
[2026-01-11 00:49:32] -rw-r--r--. 1 boincer umatlas      7169 Jan 11 00:45 init_data.xml
[2026-01-11 00:49:32] -rw-------. 1 boincer umatlas  41433035 Jan 11 00:48 HITS.47962010._002952.pool.root.1
[2026-01-11 00:49:32] -rw-------. 1 boincer umatlas      1032 Jan 11 00:48 memory_monitor_summary.json
[2026-01-11 00:49:32] -rw-------. 1 boincer umatlas   1445482 Jan 11 00:48 log.47962010._002952.job.log.tgz.1
[2026-01-11 00:49:32] -rw-------. 1 boincer umatlas      8525 Jan 11 00:48 heartbeat.json
[2026-01-11 00:49:32] -rw-r--r--. 1 boincer umatlas      8192 Jan 11 00:49 boinc_mmap_file
[2026-01-11 00:49:32] -rw-r--r--. 1 boincer umatlas        25 Jan 11 00:49 wrapper_checkpoint.txt
[2026-01-11 00:49:32] -rw-------. 1 boincer umatlas        95 Jan 11 00:49 pilot_heartbeat.json
[2026-01-11 00:49:32] -rw-------. 1 boincer umatlas       822 Jan 11 00:49 pilotlog.txt
[2026-01-11 00:49:32] -rw-------. 1 boincer umatlas    208602 Jan 11 00:49 log.47962010._002952.job.log.1
[2026-01-11 00:49:32] -rw-------. 1 boincer umatlas       353 Jan 11 00:49 output.list
[2026-01-11 00:49:32] -rw-r--r--. 1 boincer umatlas       620 Jan 11 00:49 runtime_log
[2026-01-11 00:49:32] -rw-------. 1 boincer umatlas   1669120 Jan 11 00:49 result.tar.gz
[2026-01-11 00:49:32] -rw-r--r--. 1 boincer umatlas      9339 Jan 11 00:49 runtime_log.err
[2026-01-11 00:49:32] -rw-------. 1 boincer umatlas       649 Jan 11 00:49 Nq8KDmDN1y8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmfhKDmDBSpXm.diag
[2026-01-11 00:49:32] -rw-r--r--. 1 boincer umatlas     21947 Jan 11 00:49 stderr.txt
[2026-01-11 00:49:32] HITS file was successfully produced:
[2026-01-11 00:49:32] -rw-------. 1 boincer umatlas 41433035 Jan 11 00:48 shared/HITS.pool.root.1
[2026-01-11 00:49:32]  *** Contents of shared directory: ***
[2026-01-11 00:49:32] total 424964
[2026-01-11 00:49:32] -rw-r--r--. 2 boincer umatlas 391445701 Jan 11 00:31 ATLAS.root_0
[2026-01-11 00:49:32] -rw-r--r--. 2 boincer umatlas     15847 Jan 11 00:31 start_atlas.sh
[2026-01-11 00:49:32] -rw-r--r--. 2 boincer umatlas    592613 Jan 11 00:31 input.tar.gz
[2026-01-11 00:49:32] -rw-------. 1 boincer umatlas  41433035 Jan 11 00:48 HITS.pool.root.1
[2026-01-11 00:49:32] -rw-------. 1 boincer umatlas   1669120 Jan 11 00:49 result.tar.gz
00:49:34 (609614): run_atlas exited; CPU time 7215.683486
00:49:34 (609614): called boinc_finish(0)

</stderr_txt>
]]>

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