Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:39:06 (4070873): wrapper (7.7.26015): starting
22:39:06 (4070873): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 22:39:06] Arguments: --nthreads 12
[2026-01-10 22:39:06] Threads: 12
[2026-01-10 22:39:06] Checking for CVMFS
[2026-01-10 22:39:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 22:39:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 22:39:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 22:39:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 22:39:08] 2.13.3.0 9955 95716 158348 155002 2 116 21293892 32935937 21905 16776704 0 465260161 99.728 325031611 33122 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 22:39:08] CVMFS is ok
[2026-01-10 22:39:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 22:39:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 22:39:08] Further information can be found at the LHC@home message board.
[2026-01-10 22:39:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 22:39:08] Checking for apptainer binary...
[2026-01-10 22:39:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 22:39:08] Running /usr/bin/apptainer --version
[2026-01-10 22:39:08] apptainer version 1.4.5-2.el9
[2026-01-10 22:39:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 22:39:09] c-5-1.aglt2.org
[2026-01-10 22:39:09] apptainer works
[2026-01-10 22:39:09] Set ATHENA_PROC_NUMBER=12
[2026-01-10 22:39:09] Set ATHENA_CORE_NUMBER=12
[2026-01-10 22:39:09] Starting ATLAS job with PandaID=6965941559
[2026-01-10 22:39:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 11:30:41]  *** The last 200 lines of the pilot log: ***
[2026-01-11 11:30:41] 2026-01-11 16:29:47,906 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 11:30:41] 2026-01-11 16:29:49,151 | INFO     | time since job start (46179s) is within the limit (349056.0s)
[2026-01-11 11:30:41] 2026-01-11 16:29:50,411 | INFO     | monitor loop #2637: job 0:6965941559 is in state 'finished'
[2026-01-11 11:30:41] 2026-01-11 16:29:50,411 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 11:30:41] 2026-01-11 16:29:51,160 | INFO     | time since job start (46181s) is within the limit (349056.0s)
[2026-01-11 11:30:41] 2026-01-11 16:29:52,915 | INFO     | monitor loop #2638: job 0:6965941559 is in state 'finished'
[2026-01-11 11:30:41] 2026-01-11 16:29:52,916 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 11:30:41] 2026-01-11 16:29:53,166 | INFO     | time since job start (46183s) is within the limit (349056.0s)
[2026-01-11 11:30:41] 2026-01-11 16:29:53,841 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 11:30:41] 2026-01-11 16:29:53,853 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0397000000003
[2026-01-11 11:30:41] 2026-01-11 16:29:53,860 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965941559/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 11:30:41] 2026-01-11 16:29:53,862 | INFO     | extracted standard info from prmon json
[2026-01-11 11:30:41] 2026-01-11 16:29:53,862 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 11:30:41] 2026-01-11 16:29:53,863 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 11:30:41] 2026-01-11 16:29:53,867 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 11:30:41] 2026-01-11 16:29:53,867 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 11:30:41] 2026-01-11 16:29:53,911 | INFO     | fitting pss+swap vs Time
[2026-01-11 11:30:41] 2026-01-11 16:29:53,912 | INFO     | sum of square deviations: 133449202230.61699
[2026-01-11 11:30:41] 2026-01-11 16:29:53,938 | INFO     | sum of deviations: 160761965186.19885
[2026-01-11 11:30:41] 2026-01-11 16:29:53,938 | INFO     | mean x: 1768125944.2225165
[2026-01-11 11:30:41] 2026-01-11 16:29:53,938 | INFO     | mean y: 2785103.105960265
[2026-01-11 11:30:41] 2026-01-11 16:29:53,938 | INFO     | intersect: -2127219398.522307
[2026-01-11 11:30:41] 2026-01-11 16:29:53,939 | INFO     | chi2: 3.1979378514623606
[2026-01-11 11:30:41] 2026-01-11 16:29:53,941 | INFO     | sum of square deviations: 130815676215.59492
[2026-01-11 11:30:41] 2026-01-11 16:29:53,956 | INFO     | sum of deviations: 212164968631.1066
[2026-01-11 11:30:41] 2026-01-11 16:29:53,957 | INFO     | mean x: 1768125791.7306666
[2026-01-11 11:30:41] 2026-01-11 16:29:53,957 | INFO     | mean y: 2788062.8866666667
[2026-01-11 11:30:41] 2026-01-11 16:29:53,957 | INFO     | intersect: -2864867893.8821177
[2026-01-11 11:30:41] 2026-01-11 16:29:53,958 | INFO     | chi2: 2.4962535450325722
[2026-01-11 11:30:41] 2026-01-11 16:29:53,958 | INFO     | current chi2=2.4962535450325722 (change=21.941774325255274 %)
[2026-01-11 11:30:41] 2026-01-11 16:29:53,958 | INFO     | right removable region: 749
[2026-01-11 11:30:41] 2026-01-11 16:29:53,959 | INFO     | sum of square deviations: 130815113185.59488
[2026-01-11 11:30:41] 2026-01-11 16:29:53,987 | INFO     | sum of deviations: -29482549314.890656
[2026-01-11 11:30:41] 2026-01-11 16:29:53,988 | INFO     | mean x: 1768126096.7306666
[2026-01-11 11:30:41] 2026-01-11 16:29:53,988 | INFO     | mean y: 2796098.9213333335
[2026-01-11 11:30:41] 2026-01-11 16:29:53,988 | INFO     | intersect: 401288777.42285174
[2026-01-11 11:30:41] 2026-01-11 16:29:53,989 | INFO     | chi2: 1.0352982923418406
[2026-01-11 11:30:41] 2026-01-11 16:29:53,989 | INFO     | current chi2=1.0352982923418406 (change=67.62606590780315 %)
[2026-01-11 11:30:41] 2026-01-11 16:29:53,990 | INFO     | sum of square deviations: 128215908515.47112
[2026-01-11 11:30:41] 2026-01-11 16:29:54,004 | INFO     | sum of deviations: -62661189193.558365
[2026-01-11 11:30:41] 2026-01-11 16:29:54,005 | INFO     | mean x: 1768126249.2389262
[2026-01-11 11:30:41] 2026-01-11 16:29:54,005 | INFO     | mean y: 2798042.902013423
[2026-01-11 11:30:41] 2026-01-11 16:29:54,005 | INFO     | intersect: 866909951.5134811
[2026-01-11 11:30:41] 2026-01-11 16:29:54,006 | INFO     | chi2: 0.9694238723372197
[2026-01-11 11:30:41] 2026-01-11 16:29:54,006 | INFO     | current chi2=0.9694238723372197 (change=6.362844456703698 %)
[2026-01-11 11:30:41] 2026-01-11 16:29:54,006 | INFO     | left removable region: 20
[2026-01-11 11:30:41] 2026-01-11 16:29:54,007 | INFO     | sum of square deviations: 120131024491.51727
[2026-01-11 11:30:41] 2026-01-11 16:29:54,023 | INFO     | sum of deviations: 38446358509.42255
[2026-01-11 11:30:41] 2026-01-11 16:29:54,023 | INFO     | mean x: 1768126371.2578876
[2026-01-11 11:30:41] 2026-01-11 16:29:54,024 | INFO     | mean y: 2798122.2743484224
[2026-01-11 11:30:41] 2026-01-11 16:29:54,024 | INFO     | intersect: -563067528.5604631
[2026-01-11 11:30:41] 2026-01-11 16:29:54,025 | INFO     | chi2: 0.1739795760948867
[2026-01-11 11:30:41] 2026-01-11 16:29:54,025 | INFO     | current memory leak: 0.32 B/s (using 729 data points, chi2=0.17)
[2026-01-11 11:30:41] 2026-01-11 16:29:54,027 | INFO     | could have reported an average CPU frequency of 2600 MHz (28 samples)
[2026-01-11 11:30:41] 2026-01-11 16:29:54,027 | INFO     | ..............................
[2026-01-11 11:30:41] 2026-01-11 16:29:54,027 | INFO     | . Timing measurements:
[2026-01-11 11:30:41] 2026-01-11 16:29:54,028 | INFO     | . get job = 0 s
[2026-01-11 11:30:41] 2026-01-11 16:29:54,028 | INFO     | . initial setup = 4 s
[2026-01-11 11:30:41] 2026-01-11 16:29:54,028 | INFO     | . payload setup = 39 s
[2026-01-11 11:30:41] 2026-01-11 16:29:54,028 | INFO     | . stage-in = 0 s
[2026-01-11 11:30:41] 2026-01-11 16:29:54,028 | INFO     | . payload execution = 46056 s
[2026-01-11 11:30:41] 2026-01-11 16:29:54,028 | INFO     | . stage-out = 3 s
[2026-01-11 11:30:41] 2026-01-11 16:29:54,029 | INFO     | . log creation = 0 s
[2026-01-11 11:30:41] 2026-01-11 16:29:54,029 | INFO     | ..............................
[2026-01-11 11:30:41] 2026-01-11 16:29:54,162 | INFO     | 
[2026-01-11 11:30:41] 2026-01-11 16:29:54,163 | INFO     | job summary report
[2026-01-11 11:30:41] 2026-01-11 16:29:54,163 | INFO     | --------------------------------------------------
[2026-01-11 11:30:41] 2026-01-11 16:29:54,163 | INFO     | PanDA job id: 6965941559
[2026-01-11 11:30:41] 2026-01-11 16:29:54,163 | INFO     | task id: 48039250
[2026-01-11 11:30:41] 2026-01-11 16:29:54,163 | INFO     | errors: (none)
[2026-01-11 11:30:41] 2026-01-11 16:29:54,163 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 11:30:41] 2026-01-11 16:29:54,164 | INFO     | pilot state: finished 
[2026-01-11 11:30:41] 2026-01-11 16:29:54,164 | INFO     | transexitcode: 0
[2026-01-11 11:30:41] 2026-01-11 16:29:54,164 | INFO     | exeerrorcode: 0
[2026-01-11 11:30:41] 2026-01-11 16:29:54,164 | INFO     | exeerrordiag: 
[2026-01-11 11:30:41] 2026-01-11 16:29:54,164 | INFO     | exitcode: 0
[2026-01-11 11:30:41] 2026-01-11 16:29:54,164 | INFO     | exitmsg: OK
[2026-01-11 11:30:41] 2026-01-11 16:29:54,164 | INFO     | cpuconsumptiontime: 73350 s
[2026-01-11 11:30:41] 2026-01-11 16:29:54,164 | INFO     | nevents: 400
[2026-01-11 11:30:41] 2026-01-11 16:29:54,164 | INFO     | neventsw: 0
[2026-01-11 11:30:41] 2026-01-11 16:29:54,165 | INFO     | pid: 4089007
[2026-01-11 11:30:41] 2026-01-11 16:29:54,165 | INFO     | pgrp: 4089007
[2026-01-11 11:30:41] 2026-01-11 16:29:54,165 | INFO     | corecount: 12
[2026-01-11 11:30:41] 2026-01-11 16:29:54,165 | INFO     | event service: False
[2026-01-11 11:30:41] 2026-01-11 16:29:54,165 | INFO     | sizes: {0: 2283855, 1: 2284054, 2: 2284082, 13: 2284082, 24: 2284138, 27: 2284428, 35: 2284584, 46096: 2329218, 46097: 2329217, 46102: 2338271, 46105: 2338327, 461
[2026-01-11 11:30:41] 2026-01-11 16:29:54,165 | INFO     | --------------------------------------------------
[2026-01-11 11:30:41] 2026-01-11 16:29:54,165 | INFO     | 
[2026-01-11 11:30:41] 2026-01-11 16:29:54,165 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-11 11:30:41] 2026-01-11 16:29:54,188 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,189 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,189 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,189 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,189 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,189 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,189 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,190 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,190 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,190 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,190 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,190 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,190 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,190 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,190 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,190 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,191 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,191 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 11:30:41] 2026-01-11 16:29:54,191 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,191 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 11:30:41] 2026-01-11 16:29:54,191 | INFO     | job 6965941559 has completed (purged errors)
[2026-01-11 11:30:41] 2026-01-11 16:29:54,191 | INFO     | overall cleanup function is called
[2026-01-11 11:30:41] 2026-01-11 16:29:55,205 | INFO     | --- collectZombieJob: --- 10, [4089007]
[2026-01-11 11:30:41] 2026-01-11 16:29:55,205 | INFO     | zombie collector waiting for pid 4089007
[2026-01-11 11:30:41] 2026-01-11 16:29:55,205 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 11:30:41] 2026-01-11 16:29:55,205 | INFO     | collected zombie processes
[2026-01-11 11:30:41] 2026-01-11 16:29:55,205 | INFO     | will attempt to kill all subprocesses of pid=4089007
[2026-01-11 11:30:41] 2026-01-11 16:29:55,958 | INFO     | process IDs to be killed: [4089007] (in reverse order)
[2026-01-11 11:30:41] 2026-01-11 16:29:56,085 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 11:30:41] 2026-01-11 16:29:56,086 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 11:30:41] 2026-01-11 16:29:56,100 | INFO     | did not find any defunct processes belonging to 4089007
[2026-01-11 11:30:41] 2026-01-11 16:29:56,116 | INFO     | did not find any defunct processes belonging to 4089007
[2026-01-11 11:30:41] 2026-01-11 16:29:56,116 | INFO     | ready for new job
[2026-01-11 11:30:41] 2026-01-11 16:29:56,116 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 11:30:41] 2026-01-11 16:29:56,120 | INFO     | ***************************************
[2026-01-11 11:30:41] 2026-01-11 16:29:56,120 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 11:30:41] 2026-01-11 16:29:56,121 | INFO     | ***************************************
[2026-01-11 11:30:41] 2026-01-11 16:29:56,121 | INFO     | 
[2026-01-11 11:30:41] 2026-01-11 16:29:56,123 | INFO     | architecture information:
[2026-01-11 11:30:41] 2026-01-11 16:29:56,123 | INFO     | executing command: cat /etc/os-release
[2026-01-11 11:30:41] 2026-01-11 16:29:56,153 | INFO     | cat /etc/os-release:
[2026-01-11 11:30:41] NAME="CentOS Linux"
[2026-01-11 11:30:41] VERSION="7 (Core)"
[2026-01-11 11:30:41] ID="centos"
[2026-01-11 11:30:41] ID_LIKE="rhel fedora"
[2026-01-11 11:30:41] VERSION_ID="7"
[2026-01-11 11:30:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 11:30:41] ANSI_COLOR="0;31"
[2026-01-11 11:30:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 11:30:41] HOME_URL="https://www.centos.org/"
[2026-01-11 11:30:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 11:30:41] 
[2026-01-11 11:30:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 11:30:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 11:30:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 11:30:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 11:30:41] 
[2026-01-11 11:30:41] 2026-01-11 16:29:56,153 | INFO     | ***************************************
[2026-01-11 11:30:41] 2026-01-11 16:29:56,660 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-11 11:30:41] 2026-01-11 16:29:56,738 | INFO     | sufficient remaining disk space (75067555840 B)
[2026-01-11 11:30:41] 2026-01-11 16:29:56,739 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 11:30:41] 2026-01-11 16:29:56,739 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 11:30:41] 2026-01-11 16:29:56,739 | INFO     | update_server=False
[2026-01-11 11:30:41] 2026-01-11 16:29:56,739 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 11:30:41] 2026-01-11 16:29:56,744 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 11:30:41] 2026-01-11 16:29:56,748 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 11:30:41] 2026-01-11 16:29:56,748 | INFO     | aborting loop
[2026-01-11 11:30:41] 2026-01-11 16:29:57,039 | INFO     | all data control threads have been joined
[2026-01-11 11:30:41] 2026-01-11 16:29:57,216 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 11:30:41] 2026-01-11 16:29:57,745 | INFO     | [job] retrieve thread has finished
[2026-01-11 11:30:41] 2026-01-11 16:29:57,754 | INFO     | [job] job monitor thread has finished
[2026-01-11 11:30:41] 2026-01-11 16:29:58,044 | INFO     | [data] control thread has finished
[2026-01-11 11:30:41] 2026-01-11 16:29:58,143 | INFO     | all job control threads have been joined
[2026-01-11 11:30:41] 2026-01-11 16:29:58,195 | INFO     | all payload control threads have been joined
[2026-01-11 11:30:41] 2026-01-11 16:29:58,209 | INFO     | [job] validate thread has finished
[2026-01-11 11:30:41] 2026-01-11 16:29:58,321 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 11:30:41] 2026-01-11 16:29:58,867 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 11:30:41] 2026-01-11 16:29:58,906 | INFO     | [payload] failed_post thread has finished
[2026-01-11 11:30:41] 2026-01-11 16:29:58,948 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 11:30:41] 2026-01-11 16:29:58,949 | INFO     | [data] copytool_in thread has finished
[2026-01-11 11:30:41] 2026-01-11 16:29:59,123 | INFO     | [payload] validate_post thread has finished
[2026-01-11 11:30:41] 2026-01-11 16:29:59,148 | INFO     | [job] control thread has finished
[2026-01-11 11:30:41] 2026-01-11 16:29:59,161 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 11:30:41] 2026-01-11 16:29:59,201 | INFO     | [payload] control thread has finished
[2026-01-11 11:30:41] 2026-01-11 16:29:59,229 | INFO     | [data] copytool_out thread has finished
[2026-01-11 11:30:41] 2026-01-11 16:30:00,167 | INFO     | [job] queue monitor thread has finished
[2026-01-11 11:30:41] 2026-01-11 16:30:00,757 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 11:30:41] 2026-01-11 16:30:07,526 | INFO     | job.realtimelogging is not enabled
[2026-01-11 11:30:41] 2026-01-11 16:30:08,532 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 11:30:41] 2026-01-11 16:30:26,933 | INFO     | PID=4077081 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 11:30:41] 2026-01-11 16:30:26,933 | INFO     | .. there are 34 such processes running
[2026-01-11 11:30:41] 2026-01-11 16:30:26,933 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 11:30:41] 2026-01-11 16:30:26,933 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 11:30:41] 2026-01-11 16:30:26,933 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 11:30:41] 2026-01-11 16:30:33,757 | INFO     | [monitor] cgroup control has ended
[2026-01-11 11:30:41] 2026-01-11 16:30:35,839 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140360236877632)>', '<ExcThread(monitor, started 140359506052864)>']
[2026-01-11 11:30:41] 2026-01-11 16:30:36,003 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 11:30:41] 2026-01-11 16:30:36,003 | INFO     | [monitor] control thread has ended
[2026-01-11 11:30:41] 2026-01-11 16:30:40,865 | INFO     | all workflow threads have been joined
[2026-01-11 11:30:41] 2026-01-11 16:30:40,865 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 11:30:41] 2026-01-11 16:30:40,865 | INFO     | traces error code: 0
[2026-01-11 11:30:41] 2026-01-11 16:30:40,865 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 11:30:41] 2026-01-11 16:30:41,051 [wrapper] ==== pilot stdout END ====
[2026-01-11 11:30:41] 2026-01-11 16:30:41,054 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 11:30:41] 2026-01-11 16:30:41,057 [wrapper] pilotpid: 4077081
[2026-01-11 11:30:41] 2026-01-11 16:30:41,059 [wrapper] Pilot exit status: 0
[2026-01-11 11:30:41] 2026-01-11 16:30:41,095 [wrapper] pandaids: 6965941559
[2026-01-11 11:30:41] 2026-01-11 16:30:41,236 [wrapper] cleanup supervisor_pilot 2208893 4077082
[2026-01-11 11:30:41] 2026-01-11 16:30:41,241 [wrapper] Test setup, not cleaning
[2026-01-11 11:30:41] 2026-01-11 16:30:41,247 [wrapper] apfmon messages muted
[2026-01-11 11:30:41] 2026-01-11 16:30:41,250 [wrapper] ==== wrapper stdout END ====
[2026-01-11 11:30:41] 2026-01-11 16:30:41,253 [wrapper] ==== wrapper stderr END ====
[2026-01-11 11:30:41]  *** Error codes and diagnostics ***
[2026-01-11 11:30:41]     "exeErrorCode": 0,
[2026-01-11 11:30:41]     "exeErrorDiag": "",
[2026-01-11 11:30:41]     "pilotErrorCode": 0,
[2026-01-11 11:30:41]     "pilotErrorDiag": "",
[2026-01-11 11:30:41]  *** Listing of results directory ***
[2026-01-11 11:30:41] total 1164340
[2026-01-11 11:30:41] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 22:29 pilot3.tar.gz
[2026-01-11 11:30:41] -rwx------. 1 boincer umatlas     36322 Jan 10 22:34 runpilot2-wrapper.sh
[2026-01-11 11:30:41] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 22:35 queuedata.json
[2026-01-11 11:30:41] -rw-r--r--. 1 boincer umatlas       100 Jan 10 22:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 11:30:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 22:39 run_atlas
[2026-01-11 11:30:41] -rw-r--r--. 1 boincer umatlas       105 Jan 10 22:39 job.xml
[2026-01-11 11:30:41] -rw-r--r--. 2 boincer umatlas 916416990 Jan 10 22:39 EVNT.48039248._000054.pool.root.1
[2026-01-11 11:30:41] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 22:39 start_atlas.sh
[2026-01-11 11:30:41] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 22:39 shared
[2026-01-11 11:30:41] -rw-r--r--. 2 boincer umatlas    592423 Jan 10 22:39 input.tar.gz
[2026-01-11 11:30:41] -rw-r--r--. 1 boincer umatlas         0 Jan 10 22:39 boinc_lockfile
[2026-01-11 11:30:41] -rw-r--r--. 1 boincer umatlas      2592 Jan 10 22:39 pandaJob.out
[2026-01-11 11:30:41] -rw-------. 1 boincer umatlas        57 Jan 10 22:39 setup.sh.local
[2026-01-11 11:30:41] -rw-------. 1 boincer umatlas    989548 Jan 10 22:40 agis_schedconf.cvmfs.json
[2026-01-11 11:30:41] drwx------. 5 boincer umatlas      4096 Jan 10 22:40 pilot3
[2026-01-11 11:30:41] -rw-------. 1 boincer umatlas 259047322 Jan 11 11:28 HITS.48039250._007027.pool.root.1
[2026-01-11 11:30:41] -rw-r--r--. 1 boincer umatlas       532 Jan 11 11:28 boinc_task_state.xml
[2026-01-11 11:30:41] -rw-r--r--. 1 boincer umatlas      6659 Jan 11 11:29 init_data.xml
[2026-01-11 11:30:41] -rw-------. 1 boincer umatlas      1052 Jan 11 11:29 memory_monitor_summary.json
[2026-01-11 11:30:41] -rw-------. 1 boincer umatlas   1516240 Jan 11 11:29 agis_ddmendpoints.agis.ALL.json
[2026-01-11 11:30:41] -rw-------. 1 boincer umatlas    912251 Jan 11 11:29 log.48039250._007027.job.log.tgz.1
[2026-01-11 11:30:41] -rw-------. 1 boincer umatlas        95 Jan 11 11:29 pilot_heartbeat.json
[2026-01-11 11:30:41] -rw-------. 1 boincer umatlas      7836 Jan 11 11:29 heartbeat.json
[2026-01-11 11:30:41] -rw-r--r--. 1 boincer umatlas        28 Jan 11 11:30 wrapper_checkpoint.txt
[2026-01-11 11:30:41] -rw-------. 1 boincer umatlas      4896 Jan 11 11:30 pilotlog.txt
[2026-01-11 11:30:41] -rw-r--r--. 1 boincer umatlas      8192 Jan 11 11:30 boinc_mmap_file
[2026-01-11 11:30:41] -rw-------. 1 boincer umatlas   5540120 Jan 11 11:30 log.48039250._007027.job.log.1
[2026-01-11 11:30:41] -rw-------. 1 boincer umatlas       357 Jan 11 11:30 output.list
[2026-01-11 11:30:41] -rw-r--r--. 1 boincer umatlas       620 Jan 11 11:30 runtime_log
[2026-01-11 11:30:41] -rw-------. 1 boincer umatlas   6471680 Jan 11 11:30 result.tar.gz
[2026-01-11 11:30:41] -rw-r--r--. 1 boincer umatlas      9330 Jan 11 11:30 runtime_log.err
[2026-01-11 11:30:41] -rw-------. 1 boincer umatlas       658 Jan 11 11:30 mjxMDmoO1y8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmRihKDm5Oyfkn.diag
[2026-01-11 11:30:41] -rw-r--r--. 1 boincer umatlas     21444 Jan 11 11:30 stderr.txt
[2026-01-11 11:30:41] HITS file was successfully produced:
[2026-01-11 11:30:41] -rw-------. 1 boincer umatlas 259047322 Jan 11 11:28 shared/HITS.pool.root.1
[2026-01-11 11:30:41]  *** Contents of shared directory: ***
[2026-01-11 11:30:41] total 1154840
[2026-01-11 11:30:41] -rw-r--r--. 2 boincer umatlas 916416990 Jan 10 22:39 ATLAS.root_0
[2026-01-11 11:30:41] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 22:39 start_atlas.sh
[2026-01-11 11:30:41] -rw-r--r--. 2 boincer umatlas    592423 Jan 10 22:39 input.tar.gz
[2026-01-11 11:30:41] -rw-------. 1 boincer umatlas 259047322 Jan 11 11:28 HITS.pool.root.1
[2026-01-11 11:30:41] -rw-------. 1 boincer umatlas   6471680 Jan 11 11:30 result.tar.gz
11:30:43 (4070873): run_atlas exited; CPU time 75321.759697
11:30:43 (4070873): called boinc_finish(0)

</stderr_txt>
]]>

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