Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:38:09 (249917): wrapper (7.7.26015): starting
22:38:09 (249917): wrapper: running run_atlas (--nthreads 11)
[2026-01-10 22:38:09] Arguments: --nthreads 11
[2026-01-10 22:38:09] Threads: 11
[2026-01-10 22:38:09] Checking for CVMFS
[2026-01-10 22:38:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 22:38:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 22:38:10] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 22:38:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 22:38:10] 2.13.3.0 11334 95760 167988 155002 2 341 28942773 32935936 13096 16776704 0 322638251 99.474 476243417 40403 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 22:38:10] CVMFS is ok
[2026-01-10 22:38:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 22:38:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 22:38:10] Further information can be found at the LHC@home message board.
[2026-01-10 22:38:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 22:38:10] Checking for apptainer binary...
[2026-01-10 22:38:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 22:38:10] Running /usr/bin/apptainer --version
[2026-01-10 22:38:10] apptainer version 1.4.5-2.el9
[2026-01-10 22:38:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 22:38:10] c6-4-5-2.aglt2.org
[2026-01-10 22:38:10] apptainer works
[2026-01-10 22:38:10] Set ATHENA_PROC_NUMBER=11
[2026-01-10 22:38:10] Set ATHENA_CORE_NUMBER=11
[2026-01-10 22:38:10] Starting ATLAS job with PandaID=6965941526
[2026-01-10 22:38:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:45:26 (793742): wrapper (7.7.26015): starting
02:45:26 (793742): wrapper: running run_atlas (--nthreads 10)
[2026-01-11 02:45:26] Arguments: --nthreads 10
[2026-01-11 02:45:26] Threads: 10
[2026-01-11 02:45:26] This job has been restarted, cleaning up previous attempt
[2026-01-11 02:45:26] Checking for CVMFS
[2026-01-11 02:45:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 02:45:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 02:45:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 02:45:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 02:45:27] 2.13.3.0 11334 96007 159372 155009 3 66 29278061 32935937 11556 16776704 0 322905213 99.474 476251585 40403 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-11 02:45:27] CVMFS is ok
[2026-01-11 02:45:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 02:45:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 02:45:27] Further information can be found at the LHC@home message board.
[2026-01-11 02:45:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 02:45:27] Checking for apptainer binary...
[2026-01-11 02:45:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 02:45:27] Running /usr/bin/apptainer --version
[2026-01-11 02:45:27] apptainer version 1.4.5-2.el9
[2026-01-11 02:45:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 02:45:27] c6-4-5-2.aglt2.org
[2026-01-11 02:45:27] apptainer works
[2026-01-11 02:45:27] Set ATHENA_PROC_NUMBER=10
[2026-01-11 02:45:27] Set ATHENA_CORE_NUMBER=10
[2026-01-11 02:45:27] Starting ATLAS job with PandaID=6965941526
[2026-01-11 02:45:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 06:51:09]  *** The last 200 lines of the pilot log: ***
[2026-01-11 06:51:09] 2026-01-11 11:50:15,692 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 06:51:09] 2026-01-11 11:50:17,407 | INFO     | time since job start (14680s) is within the limit (349056.0s)
[2026-01-11 06:51:09] 2026-01-11 11:50:17,539 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-11 06:51:09] 2026-01-11 11:50:17,547 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3122.341453125
[2026-01-11 06:51:09] 2026-01-11 11:50:17,557 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965941526/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 06:51:09] 2026-01-11 11:50:17,558 | INFO     | extracted standard info from prmon json
[2026-01-11 06:51:09] 2026-01-11 11:50:17,558 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 06:51:09] 2026-01-11 11:50:17,558 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 06:51:09] 2026-01-11 11:50:17,558 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 06:51:09] 2026-01-11 11:50:17,558 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 06:51:09] 2026-01-11 11:50:17,562 | INFO     | fitting pss+swap vs Time
[2026-01-11 06:51:09] 2026-01-11 11:50:17,562 | INFO     | sum of square deviations: 4340468880.07472
[2026-01-11 06:51:09] 2026-01-11 11:50:17,564 | INFO     | sum of deviations: 80679641.28217125
[2026-01-11 06:51:09] 2026-01-11 11:50:17,564 | INFO     | mean x: 1768124881.4730291
[2026-01-11 06:51:09] 2026-01-11 11:50:17,564 | INFO     | mean y: 2658459.12033195
[2026-01-11 06:51:09] 2026-01-11 11:50:17,564 | INFO     | intersect: -30207041.156419214
[2026-01-11 06:51:09] 2026-01-11 11:50:17,564 | INFO     | chi2: 1.9615958827971338
[2026-01-11 06:51:09] 2026-01-11 11:50:17,564 | INFO     | sum of square deviations: 4075907486.894067
[2026-01-11 06:51:09] 2026-01-11 11:50:17,566 | INFO     | sum of deviations: 16061504422.6483
[2026-01-11 06:51:09] 2026-01-11 11:50:17,566 | INFO     | mean x: 1768124728.9788136
[2026-01-11 06:51:09] 2026-01-11 11:50:17,566 | INFO     | mean y: 2667514.529661017
[2026-01-11 06:51:09] 2026-01-11 11:50:17,566 | INFO     | intersect: -6964797582.654752
[2026-01-11 06:51:09] 2026-01-11 11:50:17,566 | INFO     | chi2: 1.2703005170545554
[2026-01-11 06:51:09] 2026-01-11 11:50:17,566 | INFO     | current chi2=1.2703005170545554 (change=35.24147719747592 %)
[2026-01-11 06:51:09] 2026-01-11 11:50:17,566 | INFO     | sum of square deviations: 3822308403.6623383
[2026-01-11 06:51:09] 2026-01-11 11:50:17,567 | INFO     | sum of deviations: 15646408348.974028
[2026-01-11 06:51:09] 2026-01-11 11:50:17,568 | INFO     | mean x: 1768124576.4805195
[2026-01-11 06:51:09] 2026-01-11 11:50:17,568 | INFO     | mean y: 2667264.883116883
[2026-01-11 06:51:09] 2026-01-11 11:50:17,568 | INFO     | intersect: -7235053037.58227
[2026-01-11 06:51:09] 2026-01-11 11:50:17,568 | INFO     | chi2: 1.2707628623375085
[2026-01-11 06:51:09] 2026-01-11 11:50:17,568 | INFO     | current chi2=1.2707628623375085 (change=-0.03639652796687197 %)
[2026-01-11 06:51:09] 2026-01-11 11:50:17,568 | INFO     | right removable region: 230
[2026-01-11 06:51:09] 2026-01-11 11:50:17,569 | INFO     | sum of square deviations: 4075852403.9321904
[2026-01-11 06:51:09] 2026-01-11 11:50:17,570 | INFO     | sum of deviations: -33477393647.55933
[2026-01-11 06:51:09] 2026-01-11 11:50:17,570 | INFO     | mean x: 1768125033.9830508
[2026-01-11 06:51:09] 2026-01-11 11:50:17,570 | INFO     | mean y: 2677620.6101694917
[2026-01-11 06:51:09] 2026-01-11 11:50:17,570 | INFO     | intersect: 14525337401.825249
[2026-01-11 06:51:09] 2026-01-11 11:50:17,570 | INFO     | chi2: 0.786029322126737
[2026-01-11 06:51:09] 2026-01-11 11:50:17,570 | INFO     | current chi2=0.786029322126737 (change=59.92908993029186 %)
[2026-01-11 06:51:09] 2026-01-11 11:50:17,571 | INFO     | sum of square deviations: 3822227395.722932
[2026-01-11 06:51:09] 2026-01-11 11:50:17,572 | INFO     | sum of deviations: -32747366790.238094
[2026-01-11 06:51:09] 2026-01-11 11:50:17,572 | INFO     | mean x: 1768125186.4891775
[2026-01-11 06:51:09] 2026-01-11 11:50:17,572 | INFO     | mean y: 2677148.904761905
[2026-01-11 06:51:09] 2026-01-11 11:50:17,572 | INFO     | intersect: 15151290252.827066
[2026-01-11 06:51:09] 2026-01-11 11:50:17,573 | INFO     | chi2: 0.7680415752531337
[2026-01-11 06:51:09] 2026-01-11 11:50:17,573 | INFO     | current chi2=0.7680415752531337 (change=2.2884320428319964 %)
[2026-01-11 06:51:09] 2026-01-11 11:50:17,573 | INFO     | left removable region: 20
[2026-01-11 06:51:09] 2026-01-11 11:50:17,573 | INFO     | sum of square deviations: 2871766471.980935
[2026-01-11 06:51:09] 2026-01-11 11:50:17,574 | INFO     | sum of deviations: -7310214520.314288
[2026-01-11 06:51:09] 2026-01-11 11:50:17,574 | INFO     | mean x: 1768125155.9904761
[2026-01-11 06:51:09] 2026-01-11 11:50:17,574 | INFO     | mean y: 2680747.842857143
[2026-01-11 06:51:09] 2026-01-11 11:50:17,574 | INFO     | intersect: 4503525198.519469
[2026-01-11 06:51:09] 2026-01-11 11:50:17,575 | INFO     | chi2: 0.04514999873167304
[2026-01-11 06:51:09] 2026-01-11 11:50:17,575 | INFO     | current memory leak: -2.55 B/s (using 210 data points, chi2=0.05)
[2026-01-11 06:51:09] 2026-01-11 11:50:17,575 | INFO     | could have reported an average CPU frequency of 3103 MHz (11 samples)
[2026-01-11 06:51:09] 2026-01-11 11:50:17,576 | INFO     | ..............................
[2026-01-11 06:51:09] 2026-01-11 11:50:17,576 | INFO     | . Timing measurements:
[2026-01-11 06:51:09] 2026-01-11 11:50:17,576 | INFO     | . get job = 0 s
[2026-01-11 06:51:09] 2026-01-11 11:50:17,576 | INFO     | . initial setup = 2 s
[2026-01-11 06:51:09] 2026-01-11 11:50:17,576 | INFO     | . payload setup = 4 s
[2026-01-11 06:51:09] 2026-01-11 11:50:17,576 | INFO     | . stage-in = 0 s
[2026-01-11 06:51:09] 2026-01-11 11:50:17,576 | INFO     | . payload execution = 14647 s
[2026-01-11 06:51:09] 2026-01-11 11:50:17,576 | INFO     | . stage-out = 2 s
[2026-01-11 06:51:09] 2026-01-11 11:50:17,576 | INFO     | . log creation = 0 s
[2026-01-11 06:51:09] 2026-01-11 11:50:17,576 | INFO     | ..............................
[2026-01-11 06:51:09] 2026-01-11 11:50:17,655 | INFO     | 
[2026-01-11 06:51:09] 2026-01-11 11:50:17,655 | INFO     | job summary report
[2026-01-11 06:51:09] 2026-01-11 11:50:17,655 | INFO     | --------------------------------------------------
[2026-01-11 06:51:09] 2026-01-11 11:50:17,655 | INFO     | PanDA job id: 6965941526
[2026-01-11 06:51:09] 2026-01-11 11:50:17,655 | INFO     | task id: 48039250
[2026-01-11 06:51:09] 2026-01-11 11:50:17,655 | INFO     | errors: (none)
[2026-01-11 06:51:09] 2026-01-11 11:50:17,655 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 06:51:09] 2026-01-11 11:50:17,656 | INFO     | pilot state: finished 
[2026-01-11 06:51:09] 2026-01-11 11:50:17,656 | INFO     | transexitcode: 0
[2026-01-11 06:51:09] 2026-01-11 11:50:17,656 | INFO     | exeerrorcode: 0
[2026-01-11 06:51:09] 2026-01-11 11:50:17,656 | INFO     | exeerrordiag: 
[2026-01-11 06:51:09] 2026-01-11 11:50:17,656 | INFO     | exitcode: 0
[2026-01-11 06:51:09] 2026-01-11 11:50:17,656 | INFO     | exitmsg: OK
[2026-01-11 06:51:09] 2026-01-11 11:50:17,656 | INFO     | cpuconsumptiontime: 52306 s
[2026-01-11 06:51:09] 2026-01-11 11:50:17,656 | INFO     | nevents: 400
[2026-01-11 06:51:09] 2026-01-11 11:50:17,656 | INFO     | neventsw: 0
[2026-01-11 06:51:09] 2026-01-11 11:50:17,656 | INFO     | pid: 814229
[2026-01-11 06:51:09] 2026-01-11 11:50:17,656 | INFO     | pgrp: 814229
[2026-01-11 06:51:09] 2026-01-11 11:50:17,656 | INFO     | corecount: 10
[2026-01-11 06:51:09] 2026-01-11 11:50:17,656 | INFO     | event service: False
[2026-01-11 06:51:09] 2026-01-11 11:50:17,656 | INFO     | sizes: {0: 2284028, 4: 2284290, 11: 2284318, 14656: 2315568, 14659: 2324566, 14660: 2324622, 14665: 2324944}
[2026-01-11 06:51:09] 2026-01-11 11:50:17,656 | INFO     | --------------------------------------------------
[2026-01-11 06:51:09] 2026-01-11 11:50:17,656 | INFO     | 
[2026-01-11 06:51:09] 2026-01-11 11:50:17,656 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-11 06:51:09] 2026-01-11 11:50:17,674 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,674 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,675 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,675 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,675 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,675 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,675 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,675 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,675 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,675 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,675 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,675 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,675 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,675 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,675 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,676 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,676 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,676 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 06:51:09] 2026-01-11 11:50:17,676 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,676 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 06:51:09] 2026-01-11 11:50:17,676 | INFO     | job 6965941526 has completed (purged errors)
[2026-01-11 06:51:09] 2026-01-11 11:50:17,676 | INFO     | overall cleanup function is called
[2026-01-11 06:51:09] 2026-01-11 11:50:18,685 | INFO     | --- collectZombieJob: --- 10, [814229]
[2026-01-11 06:51:09] 2026-01-11 11:50:18,685 | INFO     | zombie collector waiting for pid 814229
[2026-01-11 06:51:09] 2026-01-11 11:50:18,685 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 06:51:09] 2026-01-11 11:50:18,685 | INFO     | collected zombie processes
[2026-01-11 06:51:09] 2026-01-11 11:50:18,685 | INFO     | will attempt to kill all subprocesses of pid=814229
[2026-01-11 06:51:09] 2026-01-11 11:50:18,896 | INFO     | process IDs to be killed: [814229] (in reverse order)
[2026-01-11 06:51:09] 2026-01-11 11:50:18,967 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 06:51:09] 2026-01-11 11:50:18,967 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 06:51:09] 2026-01-11 11:50:18,976 | INFO     | did not find any defunct processes belonging to 814229
[2026-01-11 06:51:09] 2026-01-11 11:50:18,985 | INFO     | did not find any defunct processes belonging to 814229
[2026-01-11 06:51:09] 2026-01-11 11:50:18,985 | INFO     | ready for new job
[2026-01-11 06:51:09] 2026-01-11 11:50:18,985 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 06:51:09] 2026-01-11 11:50:18,987 | INFO     | ***************************************
[2026-01-11 06:51:09] 2026-01-11 11:50:18,987 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 06:51:09] 2026-01-11 11:50:18,987 | INFO     | ***************************************
[2026-01-11 06:51:09] 2026-01-11 11:50:18,987 | INFO     | 
[2026-01-11 06:51:09] 2026-01-11 11:50:18,990 | INFO     | architecture information:
[2026-01-11 06:51:09] 2026-01-11 11:50:18,991 | INFO     | executing command: cat /etc/os-release
[2026-01-11 06:51:09] 2026-01-11 11:50:19,004 | INFO     | cat /etc/os-release:
[2026-01-11 06:51:09] NAME="CentOS Linux"
[2026-01-11 06:51:09] VERSION="7 (Core)"
[2026-01-11 06:51:09] ID="centos"
[2026-01-11 06:51:09] ID_LIKE="rhel fedora"
[2026-01-11 06:51:09] VERSION_ID="7"
[2026-01-11 06:51:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 06:51:09] ANSI_COLOR="0;31"
[2026-01-11 06:51:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 06:51:09] HOME_URL="https://www.centos.org/"
[2026-01-11 06:51:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 06:51:09] 
[2026-01-11 06:51:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 06:51:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 06:51:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 06:51:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 06:51:09] 
[2026-01-11 06:51:09] 2026-01-11 11:50:19,004 | INFO     | ***************************************
[2026-01-11 06:51:09] 2026-01-11 11:50:19,507 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-11 06:51:09] 2026-01-11 11:50:19,522 | INFO     | sufficient remaining disk space (72958869504 B)
[2026-01-11 06:51:09] 2026-01-11 11:50:19,522 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 06:51:09] 2026-01-11 11:50:19,522 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 06:51:09] 2026-01-11 11:50:19,522 | INFO     | update_server=False
[2026-01-11 06:51:09] 2026-01-11 11:50:19,522 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 06:51:09] 2026-01-11 11:50:19,523 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 06:51:09] 2026-01-11 11:50:19,523 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 06:51:09] 2026-01-11 11:50:19,523 | INFO     | aborting loop
[2026-01-11 06:51:09] 2026-01-11 11:50:19,523 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 06:51:09] 2026-01-11 11:50:19,730 | INFO     | all data control threads have been joined
[2026-01-11 06:51:09] 2026-01-11 11:50:19,917 | INFO     | all payload control threads have been joined
[2026-01-11 06:51:09] 2026-01-11 11:50:20,166 | INFO     | all job control threads have been joined
[2026-01-11 06:51:09] 2026-01-11 11:50:20,528 | INFO     | [job] retrieve thread has finished
[2026-01-11 06:51:09] 2026-01-11 11:50:20,528 | INFO     | [job] job monitor thread has finished
[2026-01-11 06:51:09] 2026-01-11 11:50:20,528 | INFO     | [job] queue monitor thread has finished
[2026-01-11 06:51:09] 2026-01-11 11:50:20,580 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 06:51:09] 2026-01-11 11:50:20,735 | INFO     | [data] control thread has finished
[2026-01-11 06:51:09] 2026-01-11 11:50:20,922 | INFO     | [payload] control thread has finished
[2026-01-11 06:51:09] 2026-01-11 11:50:20,969 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 06:51:09] 2026-01-11 11:50:21,012 | INFO     | [job] validate thread has finished
[2026-01-11 06:51:09] 2026-01-11 11:50:21,171 | INFO     | [job] control thread has finished
[2026-01-11 06:51:09] 2026-01-11 11:50:21,345 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 06:51:09] 2026-01-11 11:50:21,350 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 06:51:09] 2026-01-11 11:50:21,382 | INFO     | [payload] failed_post thread has finished
[2026-01-11 06:51:09] 2026-01-11 11:50:21,529 | INFO     | [data] copytool_out thread has finished
[2026-01-11 06:51:09] 2026-01-11 11:50:21,856 | INFO     | [payload] validate_post thread has finished
[2026-01-11 06:51:09] 2026-01-11 11:50:21,868 | INFO     | [data] copytool_in thread has finished
[2026-01-11 06:51:09] 2026-01-11 11:50:22,802 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 06:51:09] 2026-01-11 11:50:26,808 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 06:51:09] 2026-01-11 11:50:50,745 | INFO     | PID=801135 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 06:51:09] 2026-01-11 11:50:50,746 | INFO     | .. there are 10 such processes running
[2026-01-11 06:51:09] 2026-01-11 11:50:50,746 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 06:51:09] 2026-01-11 11:50:50,746 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 06:51:09] 2026-01-11 11:50:50,747 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 06:51:09] 2026-01-11 11:51:03,643 | INFO     | [monitor] cgroup control has ended
[2026-01-11 06:51:09] 2026-01-11 11:51:03,753 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139887963408192)>', '<ExcThread(monitor, started 139887328085760)>']
[2026-01-11 06:51:09] 2026-01-11 11:51:03,809 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 06:51:09] 2026-01-11 11:51:03,809 | INFO     | [monitor] control thread has ended
[2026-01-11 06:51:09] 2026-01-11 11:51:08,778 | INFO     | all workflow threads have been joined
[2026-01-11 06:51:09] 2026-01-11 11:51:08,778 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 06:51:09] 2026-01-11 11:51:08,778 | INFO     | traces error code: 0
[2026-01-11 06:51:09] 2026-01-11 11:51:08,778 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 06:51:09] 2026-01-11 11:51:08,927 [wrapper] ==== pilot stdout END ====
[2026-01-11 06:51:09] 2026-01-11 11:51:08,930 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 06:51:09] 2026-01-11 11:51:08,932 [wrapper] pilotpid: 801135
[2026-01-11 06:51:09] 2026-01-11 11:51:08,934 [wrapper] Pilot exit status: 0
[2026-01-11 06:51:09] 2026-01-11 11:51:08,951 [wrapper] pandaids: 6965941526 6965941526
[2026-01-11 06:51:09] 2026-01-11 11:51:09,002 [wrapper] cleanup supervisor_pilot 1370073 801136
[2026-01-11 06:51:09] 2026-01-11 11:51:09,005 [wrapper] Test setup, not cleaning
[2026-01-11 06:51:09] 2026-01-11 11:51:09,008 [wrapper] apfmon messages muted
[2026-01-11 06:51:09] 2026-01-11 11:51:09,010 [wrapper] ==== wrapper stdout END ====
[2026-01-11 06:51:09] 2026-01-11 11:51:09,012 [wrapper] ==== wrapper stderr END ====
[2026-01-11 06:51:09]  *** Error codes and diagnostics ***
[2026-01-11 06:51:09]     "exeErrorCode": 0,
[2026-01-11 06:51:09]     "exeErrorDiag": "",
[2026-01-11 06:51:09]     "pilotErrorCode": 0,
[2026-01-11 06:51:09]     "pilotErrorDiag": "",
[2026-01-11 06:51:09]  *** Listing of results directory ***
[2026-01-11 06:51:09] total 2049740
[2026-01-11 06:51:09] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-11 06:51:09] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 22:29 pilot3.tar.gz
[2026-01-11 06:51:09] -rwx------. 1 boincer umatlas     36322 Jan 10 22:34 runpilot2-wrapper.sh
[2026-01-11 06:51:09] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 22:35 queuedata.json
[2026-01-11 06:51:09] -rw-r--r--. 1 boincer umatlas       100 Jan 10 22:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 06:51:09] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 22:38 run_atlas
[2026-01-11 06:51:09] -rw-r--r--. 1 boincer umatlas       105 Jan 10 22:38 job.xml
[2026-01-11 06:51:09] -rw-r--r--. 3 boincer umatlas 916354918 Jan 10 22:38 EVNT.48039248._000058.pool.root.1
[2026-01-11 06:51:09] -rw-r--r--. 3 boincer umatlas 916354918 Jan 10 22:38 ATLAS.root_0
[2026-01-11 06:51:09] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 22:38 start_atlas.sh
[2026-01-11 06:51:09] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 22:38 shared
[2026-01-11 06:51:09] -rw-r--r--. 2 boincer umatlas    592422 Jan 10 22:38 input.tar.gz
[2026-01-11 06:51:09] -rw-r--r--. 1 boincer umatlas         0 Jan 10 22:38 boinc_lockfile
[2026-01-11 06:51:09] -rw-r--r--. 1 boincer umatlas      2593 Jan 11 02:45 pandaJob.out
[2026-01-11 06:51:09] -rw-------. 1 boincer umatlas        57 Jan 11 02:45 setup.sh.local
[2026-01-11 06:51:09] -rw-------. 1 boincer umatlas    989548 Jan 11 02:45 agis_schedconf.cvmfs.json
[2026-01-11 06:51:09] -rw-------. 1 boincer umatlas 257420029 Jan 11 06:49 HITS.48039250._006994.pool.root.1
[2026-01-11 06:51:09] -rw-r--r--. 1 boincer umatlas       532 Jan 11 06:49 boinc_task_state.xml
[2026-01-11 06:51:09] -rw-------. 1 boincer umatlas        96 Jan 11 06:49 pilot_heartbeat.json
[2026-01-11 06:51:09] -rw-r--r--. 1 boincer umatlas      6875 Jan 11 06:49 init_data.xml
[2026-01-11 06:51:09] -rw-------. 1 boincer umatlas      1046 Jan 11 06:50 memory_monitor_summary.json
[2026-01-11 06:51:09] -rw-------. 1 boincer umatlas   1516240 Jan 11 06:50 agis_ddmendpoints.agis.ALL.json
[2026-01-11 06:51:09] -rw-------. 1 boincer umatlas    512970 Jan 11 06:50 log.48039250._006994.job.log.tgz.1
[2026-01-11 06:51:09] -rw-------. 1 boincer umatlas      7833 Jan 11 06:50 heartbeat.json
[2026-01-11 06:51:09] -rw-r--r--. 1 boincer umatlas      8192 Jan 11 06:51 boinc_mmap_file
[2026-01-11 06:51:09] -rw-r--r--. 1 boincer umatlas        28 Jan 11 06:51 wrapper_checkpoint.txt
[2026-01-11 06:51:09] -rw-------. 1 boincer umatlas      4823 Jan 11 06:51 pilotlog.txt
[2026-01-11 06:51:09] -rw-------. 1 boincer umatlas   1928383 Jan 11 06:51 log.48039250._006994.job.log.1
[2026-01-11 06:51:09] -rw-------. 1 boincer umatlas       357 Jan 11 06:51 output.list
[2026-01-11 06:51:09] -rw-r--r--. 1 boincer umatlas       620 Jan 11 06:51 runtime_log
[2026-01-11 06:51:09] -rw-------. 1 boincer umatlas   2457600 Jan 11 06:51 result.tar.gz
[2026-01-11 06:51:09] -rw-r--r--. 1 boincer umatlas      9430 Jan 11 06:51 runtime_log.err
[2026-01-11 06:51:09] -rw-------. 1 boincer umatlas       785 Jan 11 06:51 nhoLDmoO1y8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyhhKDmuXyTRo.diag
[2026-01-11 06:51:09] -rw-r--r--. 1 boincer umatlas     23350 Jan 11 06:51 stderr.txt
[2026-01-11 06:51:09] HITS file was successfully produced:
[2026-01-11 06:51:09] -rw-------. 1 boincer umatlas 257420029 Jan 11 06:49 shared/HITS.pool.root.1
[2026-01-11 06:51:09]  *** Contents of shared directory: ***
[2026-01-11 06:51:09] total 1149272
[2026-01-11 06:51:09] -rw-r--r--. 3 boincer umatlas 916354918 Jan 10 22:38 ATLAS.root_0
[2026-01-11 06:51:09] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 22:38 start_atlas.sh
[2026-01-11 06:51:09] -rw-r--r--. 2 boincer umatlas    592422 Jan 10 22:38 input.tar.gz
[2026-01-11 06:51:09] -rw-------. 1 boincer umatlas 257420029 Jan 11 06:49 HITS.pool.root.1
[2026-01-11 06:51:09] -rw-------. 1 boincer umatlas   2457600 Jan 11 06:51 result.tar.gz
06:51:10 (793742): run_atlas exited; CPU time 52698.214618
06:51:10 (793742): called boinc_finish(0)

</stderr_txt>
]]>

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