Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:38:35 (10740): wrapper (7.7.26015): starting
22:38:35 (10740): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 22:38:35] Arguments: --nthreads 8
[2026-01-10 22:38:35] Threads: 8
[2026-01-10 22:38:35] Checking for CVMFS
[2026-01-10 22:38:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 22:38:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 22:38:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 22:38:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 22:38:35] 2.11.2.0 21766 183409 133272 155002 1 188 17222311 18432001 917 130560 0 123670377 99.980 7037240 29850 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 22:38:35] CVMFS is ok
[2026-01-10 22:38:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 22:38:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 22:38:36] Further information can be found at the LHC@home message board.
[2026-01-10 22:38:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 22:38:36] Checking for apptainer binary...
[2026-01-10 22:38:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 22:38:36] Running /usr/bin/apptainer --version
[2026-01-10 22:38:36] apptainer version 1.3.2-1.el7
[2026-01-10 22:38:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 22:38:36] c-206-18.aglt2.org
[2026-01-10 22:38:36] apptainer works
[2026-01-10 22:38:36] Set ATHENA_PROC_NUMBER=8
[2026-01-10 22:38:36] Set ATHENA_CORE_NUMBER=8
[2026-01-10 22:38:36] Starting ATLAS job with PandaID=6965941399
[2026-01-10 22:38:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 02:54:19]  *** The last 200 lines of the pilot log: ***
[2026-01-11 02:54:19] 2026-01-11 07:53:13,323 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-11 02:54:19] 2026-01-11 07:53:13,327 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1690.2916666666667
[2026-01-11 02:54:19] 2026-01-11 07:53:13,329 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6965941399/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 02:54:19] 2026-01-11 07:53:13,330 | INFO     | extracted standard info from prmon json
[2026-01-11 02:54:19] 2026-01-11 07:53:13,330 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 02:54:19] 2026-01-11 07:53:13,330 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 02:54:19] 2026-01-11 07:53:13,331 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 02:54:19] 2026-01-11 07:53:13,331 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 02:54:19] 2026-01-11 07:53:13,335 | INFO     | fitting pss+swap vs Time
[2026-01-11 02:54:19] 2026-01-11 07:53:13,335 | INFO     | sum of square deviations: 4844974562.5
[2026-01-11 02:54:19] 2026-01-11 07:53:13,337 | INFO     | sum of deviations: 38465148017.00001
[2026-01-11 02:54:19] 2026-01-11 07:53:13,337 | INFO     | mean x: 1768110346.5
[2026-01-11 02:54:19] 2026-01-11 07:53:13,337 | INFO     | mean y: 2532083.152
[2026-01-11 02:54:19] 2026-01-11 07:53:13,337 | INFO     | intersect: -14034822563.642736
[2026-01-11 02:54:19] 2026-01-11 07:53:13,337 | INFO     | chi2: 1.2317494121414585
[2026-01-11 02:54:19] 2026-01-11 07:53:13,338 | INFO     | sum of square deviations: 4560048290.0
[2026-01-11 02:54:19] 2026-01-11 07:53:13,339 | INFO     | sum of deviations: 37364954152.00001
[2026-01-11 02:54:19] 2026-01-11 07:53:13,339 | INFO     | mean x: 1768110194.0
[2026-01-11 02:54:19] 2026-01-11 07:53:13,339 | INFO     | mean y: 2531494.224489796
[2026-01-11 02:54:19] 2026-01-11 07:53:13,340 | INFO     | intersect: -14485331820.59445
[2026-01-11 02:54:19] 2026-01-11 07:53:13,340 | INFO     | chi2: 1.232153087694959
[2026-01-11 02:54:19] 2026-01-11 07:53:13,340 | INFO     | current chi2=1.232153087694959 (change=-0.03277253875839844 %)
[2026-01-11 02:54:19] 2026-01-11 07:53:13,340 | INFO     | right removable region: 244
[2026-01-11 02:54:19] 2026-01-11 07:53:13,341 | INFO     | sum of square deviations: 4560048290.0
[2026-01-11 02:54:19] 2026-01-11 07:53:13,342 | INFO     | sum of deviations: 3697210854.0
[2026-01-11 02:54:19] 2026-01-11 07:53:13,342 | INFO     | mean x: 1768110499.0
[2026-01-11 02:54:19] 2026-01-11 07:53:13,342 | INFO     | mean y: 2550535.6775510204
[2026-01-11 02:54:19] 2026-01-11 07:53:13,342 | INFO     | intersect: -1431003872.5750327
[2026-01-11 02:54:19] 2026-01-11 07:53:13,343 | INFO     | chi2: 0.03364603501554695
[2026-01-11 02:54:19] 2026-01-11 07:53:13,343 | INFO     | current chi2=0.03364603501554695 (change=97.26843506610231 %)
[2026-01-11 02:54:19] 2026-01-11 07:53:13,343 | INFO     | sum of square deviations: 4286517580.0
[2026-01-11 02:54:19] 2026-01-11 07:53:13,345 | INFO     | sum of deviations: 483852000.0
[2026-01-11 02:54:19] 2026-01-11 07:53:13,345 | INFO     | mean x: 1768110651.5
[2026-01-11 02:54:19] 2026-01-11 07:53:13,345 | INFO     | mean y: 2552303.375
[2026-01-11 02:54:19] 2026-01-11 07:53:13,345 | INFO     | intersect: -197027859.07229316
[2026-01-11 02:54:19] 2026-01-11 07:53:13,345 | INFO     | chi2: 0.015976952714684044
[2026-01-11 02:54:19] 2026-01-11 07:53:13,345 | INFO     | current chi2=0.015976952714684044 (change=52.51460474525004 %)
[2026-01-11 02:54:19] 2026-01-11 07:53:13,346 | INFO     | sum of square deviations: 4024149870.0
[2026-01-11 02:54:19] 2026-01-11 07:53:13,347 | INFO     | sum of deviations: 1423715904.9999993
[2026-01-11 02:54:19] 2026-01-11 07:53:13,347 | INFO     | mean x: 1768110804.0
[2026-01-11 02:54:19] 2026-01-11 07:53:13,347 | INFO     | mean y: 2551753.30212766
[2026-01-11 02:54:19] 2026-01-11 07:53:13,348 | INFO     | intersect: -622993406.4901283
[2026-01-11 02:54:19] 2026-01-11 07:53:13,348 | INFO     | chi2: 0.015231696949464886
[2026-01-11 02:54:19] 2026-01-11 07:53:13,348 | INFO     | current chi2=0.015231696949464886 (change=4.664567633940671 %)
[2026-01-11 02:54:19] 2026-01-11 07:53:13,348 | INFO     | left removable region: 30
[2026-01-11 02:54:19] 2026-01-11 07:53:13,348 | INFO     | sum of square deviations: 3038856977.5
[2026-01-11 02:54:19] 2026-01-11 07:53:13,350 | INFO     | sum of deviations: 7054046709.999999
[2026-01-11 02:54:19] 2026-01-11 07:53:13,350 | INFO     | mean x: 1768111078.5
[2026-01-11 02:54:19] 2026-01-11 07:53:13,350 | INFO     | mean y: 2547463.429906542
[2026-01-11 02:54:19] 2026-01-11 07:53:13,350 | INFO     | intersect: -4101738532.44088
[2026-01-11 02:54:19] 2026-01-11 07:53:13,350 | INFO     | chi2: 0.004412387979016735
[2026-01-11 02:54:19] 2026-01-11 07:53:13,350 | INFO     | current memory leak: 2.32 B/s (using 214 data points, chi2=0.00)
[2026-01-11 02:54:19] 2026-01-11 07:53:13,351 | INFO     | could have reported an average CPU frequency of 2428 MHz (12 samples)
[2026-01-11 02:54:19] 2026-01-11 07:53:13,351 | INFO     | ..............................
[2026-01-11 02:54:19] 2026-01-11 07:53:13,351 | INFO     | . Timing measurements:
[2026-01-11 02:54:19] 2026-01-11 07:53:13,351 | INFO     | . get job = 0 s
[2026-01-11 02:54:19] 2026-01-11 07:53:13,351 | INFO     | . initial setup = 2 s
[2026-01-11 02:54:19] 2026-01-11 07:53:13,351 | INFO     | . payload setup = 4 s
[2026-01-11 02:54:19] 2026-01-11 07:53:13,351 | INFO     | . stage-in = 0 s
[2026-01-11 02:54:19] 2026-01-11 07:53:13,352 | INFO     | . payload execution = 15233 s
[2026-01-11 02:54:19] 2026-01-11 07:53:13,352 | INFO     | . stage-out = 2 s
[2026-01-11 02:54:19] 2026-01-11 07:53:13,352 | INFO     | . log creation = 0 s
[2026-01-11 02:54:19] 2026-01-11 07:53:13,352 | INFO     | ..............................
[2026-01-11 02:54:19] 2026-01-11 07:53:13,425 | INFO     | time since job start (15264s) is within the limit (349056.0s)
[2026-01-11 02:54:19] 2026-01-11 07:53:13,831 | INFO     | 
[2026-01-11 02:54:19] 2026-01-11 07:53:13,831 | INFO     | job summary report
[2026-01-11 02:54:19] 2026-01-11 07:53:13,831 | INFO     | --------------------------------------------------
[2026-01-11 02:54:19] 2026-01-11 07:53:13,831 | INFO     | PanDA job id: 6965941399
[2026-01-11 02:54:19] 2026-01-11 07:53:13,831 | INFO     | task id: 48039250
[2026-01-11 02:54:19] 2026-01-11 07:53:13,832 | INFO     | errors: (none)
[2026-01-11 02:54:19] 2026-01-11 07:53:13,832 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 02:54:19] 2026-01-11 07:53:13,832 | INFO     | pilot state: finished 
[2026-01-11 02:54:19] 2026-01-11 07:53:13,832 | INFO     | transexitcode: 0
[2026-01-11 02:54:19] 2026-01-11 07:53:13,832 | INFO     | exeerrorcode: 0
[2026-01-11 02:54:19] 2026-01-11 07:53:13,832 | INFO     | exeerrordiag: 
[2026-01-11 02:54:19] 2026-01-11 07:53:13,833 | INFO     | exitcode: 0
[2026-01-11 02:54:19] 2026-01-11 07:53:13,833 | INFO     | exitmsg: OK
[2026-01-11 02:54:19] 2026-01-11 07:53:13,833 | INFO     | cpuconsumptiontime: 117458 s
[2026-01-11 02:54:19] 2026-01-11 07:53:13,833 | INFO     | nevents: 400
[2026-01-11 02:54:19] 2026-01-11 07:53:13,833 | INFO     | neventsw: 0
[2026-01-11 02:54:19] 2026-01-11 07:53:13,833 | INFO     | pid: 30190
[2026-01-11 02:54:19] 2026-01-11 07:53:13,833 | INFO     | pgrp: 30190
[2026-01-11 02:54:19] 2026-01-11 07:53:13,834 | INFO     | corecount: 8
[2026-01-11 02:54:19] 2026-01-11 07:53:13,834 | INFO     | event service: False
[2026-01-11 02:54:19] 2026-01-11 07:53:13,834 | INFO     | sizes: {0: 2284025, 3: 2284287, 11: 2284315, 15241: 2315431, 15243: 2324429, 15244: 2324485, 15250: 2324807}
[2026-01-11 02:54:19] 2026-01-11 07:53:13,834 | INFO     | --------------------------------------------------
[2026-01-11 02:54:19] 2026-01-11 07:53:13,834 | INFO     | 
[2026-01-11 02:54:19] 2026-01-11 07:53:13,834 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-11 02:54:19] 2026-01-11 07:53:13,853 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,853 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,853 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,854 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,854 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,854 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,854 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,854 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,854 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,855 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,855 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,855 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,855 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,855 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,855 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,855 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,856 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,856 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 02:54:19] 2026-01-11 07:53:13,856 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,856 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 02:54:19] 2026-01-11 07:53:13,856 | INFO     | job 6965941399 has completed (purged errors)
[2026-01-11 02:54:19] 2026-01-11 07:53:13,856 | INFO     | overall cleanup function is called
[2026-01-11 02:54:19] 2026-01-11 07:53:14,865 | INFO     | --- collectZombieJob: --- 10, [30190]
[2026-01-11 02:54:19] 2026-01-11 07:53:14,865 | INFO     | zombie collector waiting for pid 30190
[2026-01-11 02:54:19] 2026-01-11 07:53:14,865 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 02:54:19] 2026-01-11 07:53:14,865 | INFO     | collected zombie processes
[2026-01-11 02:54:19] 2026-01-11 07:53:14,865 | INFO     | will attempt to kill all subprocesses of pid=30190
[2026-01-11 02:54:19] 2026-01-11 07:53:14,976 | INFO     | process IDs to be killed: [30190] (in reverse order)
[2026-01-11 02:54:19] 2026-01-11 07:53:15,171 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 02:54:19] 2026-01-11 07:53:15,171 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 02:54:19] 2026-01-11 07:53:15,175 | INFO     | did not find any defunct processes belonging to 30190
[2026-01-11 02:54:19] 2026-01-11 07:53:15,178 | INFO     | did not find any defunct processes belonging to 30190
[2026-01-11 02:54:19] 2026-01-11 07:53:15,178 | INFO     | ready for new job
[2026-01-11 02:54:19] 2026-01-11 07:53:15,178 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 02:54:19] 2026-01-11 07:53:15,180 | INFO     | ***************************************
[2026-01-11 02:54:19] 2026-01-11 07:53:15,180 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 02:54:19] 2026-01-11 07:53:15,180 | INFO     | ***************************************
[2026-01-11 02:54:19] 2026-01-11 07:53:15,180 | INFO     | 
[2026-01-11 02:54:19] 2026-01-11 07:53:15,181 | INFO     | architecture information:
[2026-01-11 02:54:19] 2026-01-11 07:53:15,181 | INFO     | executing command: cat /etc/os-release
[2026-01-11 02:54:19] 2026-01-11 07:53:15,193 | INFO     | cat /etc/os-release:
[2026-01-11 02:54:19] NAME="CentOS Linux"
[2026-01-11 02:54:19] VERSION="7 (Core)"
[2026-01-11 02:54:19] ID="centos"
[2026-01-11 02:54:19] ID_LIKE="rhel fedora"
[2026-01-11 02:54:19] VERSION_ID="7"
[2026-01-11 02:54:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 02:54:19] ANSI_COLOR="0;31"
[2026-01-11 02:54:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 02:54:19] HOME_URL="https://www.centos.org/"
[2026-01-11 02:54:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 02:54:19] 
[2026-01-11 02:54:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 02:54:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 02:54:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 02:54:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 02:54:19] 
[2026-01-11 02:54:19] 2026-01-11 07:53:15,193 | INFO     | ***************************************
[2026-01-11 02:54:19] 2026-01-11 07:53:15,696 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-11 02:54:19] 2026-01-11 07:53:15,712 | INFO     | sufficient remaining disk space (25855787008 B)
[2026-01-11 02:54:19] 2026-01-11 07:53:15,712 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 02:54:19] 2026-01-11 07:53:15,712 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 02:54:19] 2026-01-11 07:53:15,712 | INFO     | update_server=False
[2026-01-11 02:54:19] 2026-01-11 07:53:15,713 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 02:54:19] 2026-01-11 07:53:15,713 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 02:54:19] 2026-01-11 07:53:15,906 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 02:54:19] 2026-01-11 07:53:15,906 | INFO     | aborting loop
[2026-01-11 02:54:19] 2026-01-11 07:53:16,372 | INFO     | all data control threads have been joined
[2026-01-11 02:54:19] 2026-01-11 07:53:16,389 | INFO     | all job control threads have been joined
[2026-01-11 02:54:19] 2026-01-11 07:53:16,573 | INFO     | all payload control threads have been joined
[2026-01-11 02:54:19] 2026-01-11 07:53:16,718 | INFO     | [job] retrieve thread has finished
[2026-01-11 02:54:19] 2026-01-11 07:53:16,879 | INFO     | [payload] validate_post thread has finished
[2026-01-11 02:54:19] 2026-01-11 07:53:16,922 | INFO     | [job] job monitor thread has finished
[2026-01-11 02:54:19] 2026-01-11 07:53:16,947 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 02:54:19] 2026-01-11 07:53:17,360 | INFO     | [payload] failed_post thread has finished
[2026-01-11 02:54:19] 2026-01-11 07:53:17,378 | INFO     | [data] control thread has finished
[2026-01-11 02:54:19] 2026-01-11 07:53:17,392 | INFO     | [job] control thread has finished
[2026-01-11 02:54:19] 2026-01-11 07:53:17,579 | INFO     | [payload] control thread has finished
[2026-01-11 02:54:19] 2026-01-11 07:53:17,597 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 02:54:19] 2026-01-11 07:53:17,719 | INFO     | [data] copytool_out thread has finished
[2026-01-11 02:54:19] 2026-01-11 07:53:17,729 | INFO     | [data] copytool_in thread has finished
[2026-01-11 02:54:19] 2026-01-11 07:53:17,730 | INFO     | [job] validate thread has finished
[2026-01-11 02:54:19] 2026-01-11 07:53:17,731 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 02:54:19] 2026-01-11 07:53:17,739 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 02:54:19] 2026-01-11 07:53:18,445 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 02:54:19] 2026-01-11 07:53:18,738 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 02:54:19] 2026-01-11 07:53:19,450 | INFO     | [job] queue monitor thread has finished
[2026-01-11 02:54:19] 2026-01-11 07:53:22,744 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 02:54:19] 2026-01-11 07:53:46,633 | INFO     | PID=16392 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-11 02:54:19] 2026-01-11 07:53:46,633 | INFO     | .. there are 2 such processes running
[2026-01-11 02:54:19] 2026-01-11 07:53:46,634 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 02:54:19] 2026-01-11 07:53:46,634 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 02:54:19] 2026-01-11 07:53:46,634 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 02:54:19] 2026-01-11 07:53:47,937 [wrapper] supervise_pilot (15 min periods counter: 18)
[2026-01-11 02:54:19] 2026-01-11 07:54:14,047 | INFO     | [monitor] cgroup control has ended
[2026-01-11 02:54:19] 2026-01-11 07:54:14,591 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139739424302912)>', '<ExcThread(monitor, started 139739126535936)>']
[2026-01-11 02:54:19] 2026-01-11 07:54:14,751 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 02:54:19] 2026-01-11 07:54:14,751 | INFO     | [monitor] control thread has ended
[2026-01-11 02:54:19] 2026-01-11 07:54:19,616 | INFO     | all workflow threads have been joined
[2026-01-11 02:54:19] 2026-01-11 07:54:19,617 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 02:54:19] 2026-01-11 07:54:19,617 | INFO     | traces error code: 0
[2026-01-11 02:54:19] 2026-01-11 07:54:19,617 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 02:54:19] 2026-01-11 07:54:19,708 [wrapper] ==== pilot stdout END ====
[2026-01-11 02:54:19] 2026-01-11 07:54:19,712 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 02:54:19] 2026-01-11 07:54:19,715 [wrapper] pilotpid: 16392
[2026-01-11 02:54:19] 2026-01-11 07:54:19,719 [wrapper] Pilot exit status: 0
[2026-01-11 02:54:19] 2026-01-11 07:54:19,733 [wrapper] pandaids: 6965941399
[2026-01-11 02:54:19] 2026-01-11 07:54:19,778 [wrapper] cleanup supervisor_pilot 26464 16393
[2026-01-11 02:54:19] 2026-01-11 07:54:19,781 [wrapper] Test setup, not cleaning
[2026-01-11 02:54:19] 2026-01-11 07:54:19,785 [wrapper] apfmon messages muted
[2026-01-11 02:54:19] 2026-01-11 07:54:19,789 [wrapper] ==== wrapper stdout END ====
[2026-01-11 02:54:19] 2026-01-11 07:54:19,793 [wrapper] ==== wrapper stderr END ====
[2026-01-11 02:54:19]  *** Error codes and diagnostics ***
[2026-01-11 02:54:19]     "exeErrorCode": 0,
[2026-01-11 02:54:19]     "exeErrorDiag": "",
[2026-01-11 02:54:19]     "pilotErrorCode": 0,
[2026-01-11 02:54:19]     "pilotErrorDiag": "",
[2026-01-11 02:54:19]  *** Listing of results directory ***
[2026-01-11 02:54:19] total 1162592
[2026-01-11 02:54:19] -rw-r--r-- 1 boincer umatlas    579449 Jan 10 22:29 pilot3.tar.gz
[2026-01-11 02:54:19] -rwx------ 1 boincer umatlas     36322 Jan 10 22:33 runpilot2-wrapper.sh
[2026-01-11 02:54:19] -rw-r--r-- 1 boincer umatlas      5112 Jan 10 22:33 queuedata.json
[2026-01-11 02:54:19] -rw-r--r-- 1 boincer umatlas       100 Jan 10 22:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 02:54:19] -rwxr-xr-x 1 boincer umatlas      7986 Jan 10 22:38 run_atlas
[2026-01-11 02:54:19] -rw-r--r-- 1 boincer umatlas       105 Jan 10 22:38 job.xml
[2026-01-11 02:54:19] -rw-r--r-- 2 boincer umatlas 926669133 Jan 10 22:38 EVNT.48039248._000029.pool.root.1
[2026-01-11 02:54:19] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 22:38 start_atlas.sh
[2026-01-11 02:54:19] drwxrwx--x 2 boincer umatlas      4096 Jan 10 22:38 shared
[2026-01-11 02:54:19] -rw-r--r-- 2 boincer umatlas    592420 Jan 10 22:38 input.tar.gz
[2026-01-11 02:54:19] -rw-r--r-- 1 boincer umatlas         0 Jan 10 22:38 boinc_lockfile
[2026-01-11 02:54:19] -rw-r--r-- 1 boincer umatlas      2591 Jan 10 22:38 pandaJob.out
[2026-01-11 02:54:19] -rw------- 1 boincer umatlas        57 Jan 10 22:38 setup.sh.local
[2026-01-11 02:54:19] -rw------- 1 boincer umatlas    989548 Jan 10 22:38 agis_schedconf.cvmfs.json
[2026-01-11 02:54:19] drwx------ 5 boincer umatlas      4096 Jan 10 22:38 pilot3
[2026-01-11 02:54:19] -rw-r--r-- 1 boincer umatlas      5952 Jan 11 02:49 init_data.xml
[2026-01-11 02:54:19] -rw------- 1 boincer umatlas 254625768 Jan 11 02:52 HITS.48039250._006963.pool.root.1
[2026-01-11 02:54:19] -rw-r--r-- 1 boincer umatlas       532 Jan 11 02:52 boinc_task_state.xml
[2026-01-11 02:54:19] -rw------- 1 boincer umatlas      1049 Jan 11 02:53 memory_monitor_summary.json
[2026-01-11 02:54:19] -rw------- 1 boincer umatlas   1516240 Jan 11 02:53 agis_ddmendpoints.agis.ALL.json
[2026-01-11 02:54:19] -rw------- 1 boincer umatlas    515900 Jan 11 02:53 log.48039250._006963.job.log.tgz.1
[2026-01-11 02:54:19] -rw------- 1 boincer umatlas      7851 Jan 11 02:53 heartbeat.json
[2026-01-11 02:54:19] -rw-r--r-- 1 boincer umatlas      8192 Jan 11 02:53 boinc_mmap_file
[2026-01-11 02:54:19] -rw------- 1 boincer umatlas        95 Jan 11 02:53 pilot_heartbeat.json
[2026-01-11 02:54:19] -rw-r--r-- 1 boincer umatlas        29 Jan 11 02:53 wrapper_checkpoint.txt
[2026-01-11 02:54:19] -rw------- 1 boincer umatlas      4821 Jan 11 02:54 pilotlog.txt
[2026-01-11 02:54:19] -rw------- 1 boincer umatlas   2123851 Jan 11 02:54 log.48039250._006963.job.log.1
[2026-01-11 02:54:19] -rw------- 1 boincer umatlas       357 Jan 11 02:54 output.list
[2026-01-11 02:54:19] -rw-r--r-- 1 boincer umatlas       620 Jan 11 02:54 runtime_log
[2026-01-11 02:54:19] -rw------- 1 boincer umatlas   2662400 Jan 11 02:54 result.tar.gz
[2026-01-11 02:54:19] -rw-r--r-- 1 boincer umatlas      9343 Jan 11 02:54 runtime_log.err
[2026-01-11 02:54:19] -rw------- 1 boincer umatlas       662 Jan 11 02:54 PtgNDmMO1y8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmThhKDmKox7Kn.diag
[2026-01-11 02:54:19] -rw-r--r-- 1 boincer umatlas     21040 Jan 11 02:54 stderr.txt
[2026-01-11 02:54:19] HITS file was successfully produced:
[2026-01-11 02:54:19] -rw------- 1 boincer umatlas 254625768 Jan 11 02:52 shared/HITS.pool.root.1
[2026-01-11 02:54:19]  *** Contents of shared directory: ***
[2026-01-11 02:54:19] total 1156816
[2026-01-11 02:54:19] -rw-r--r-- 2 boincer umatlas 926669133 Jan 10 22:38 ATLAS.root_0
[2026-01-11 02:54:19] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 22:38 start_atlas.sh
[2026-01-11 02:54:19] -rw-r--r-- 2 boincer umatlas    592420 Jan 10 22:38 input.tar.gz
[2026-01-11 02:54:19] -rw------- 1 boincer umatlas 254625768 Jan 11 02:52 HITS.pool.root.1
[2026-01-11 02:54:19] -rw------- 1 boincer umatlas   2662400 Jan 11 02:54 result.tar.gz
02:54:21 (10740): run_atlas exited; CPU time 117664.025849
02:54:21 (10740): called boinc_finish(0)

</stderr_txt>
]]>

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