Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:37:37 (3822757): wrapper (7.7.26015): starting
22:37:37 (3822757): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 22:37:37] Arguments: --nthreads 8
[2026-01-10 22:37:37] Threads: 8
[2026-01-10 22:37:37] Checking for CVMFS
[2026-01-10 22:37:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 22:37:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 22:37:39] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 22:37:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 22:37:40] 2.13.3.0 12257 95710 687300 155002 1 394 22368638 32935937 43597 16776704 0 652895528 99.728 436441093 23209 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 22:37:40] CVMFS is ok
[2026-01-10 22:37:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 22:37:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 22:37:40] Further information can be found at the LHC@home message board.
[2026-01-10 22:37:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 22:37:40] Checking for apptainer binary...
[2026-01-10 22:37:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 22:37:40] Running /usr/bin/apptainer --version
[2026-01-10 22:37:40] apptainer version 1.4.5-2.el9
[2026-01-10 22:37:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 22:37:41] c-1-3.aglt2.org
[2026-01-10 22:37:41] apptainer works
[2026-01-10 22:37:41] Set ATHENA_PROC_NUMBER=8
[2026-01-10 22:37:41] Set ATHENA_CORE_NUMBER=8
[2026-01-10 22:37:41] Starting ATLAS job with PandaID=6965941371
[2026-01-10 22:37:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:20:14 (3822757): BOINC client no longer exists - exiting
04:20:14 (3822757): timer handler: client dead, exiting
04:28:46 (1019917): wrapper (7.7.26015): starting
04:28:46 (1019917): wrapper: running run_atlas (--nthreads 10)
[2026-01-11 04:28:46] Arguments: --nthreads 10
[2026-01-11 04:28:46] Threads: 10
[2026-01-11 04:28:46] This job has been restarted, cleaning up previous attempt
[2026-01-11 04:28:47] Checking for CVMFS
[2026-01-11 04:28:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 04:28:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 04:28:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 04:28:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 04:28:49] 2.13.3.0 12257 96061 682400 155011 3 65 24492295 32935936 44596 16776704 0 653827167 99.728 436933732 23188 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-11 04:28:49] CVMFS is ok
[2026-01-11 04:28:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 04:28:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 04:28:49] Further information can be found at the LHC@home message board.
[2026-01-11 04:28:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 04:28:49] Checking for apptainer binary...
[2026-01-11 04:28:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 04:28:49] Running /usr/bin/apptainer --version
[2026-01-11 04:28:50] apptainer version 1.4.5-2.el9
[2026-01-11 04:28:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 04:28:51] c-1-3.aglt2.org
[2026-01-11 04:28:51] apptainer works
[2026-01-11 04:28:51] Set ATHENA_PROC_NUMBER=10
[2026-01-11 04:28:51] Set ATHENA_CORE_NUMBER=10
[2026-01-11 04:28:51] Starting ATLAS job with PandaID=6965941371
[2026-01-11 04:28:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 13:28:05]  *** The last 200 lines of the pilot log: ***
[2026-01-11 13:28:05] 2026-01-11 18:27:14,654 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 13:28:05] 2026-01-11 18:27:15,697 | INFO     | time since job start (32235s) is within the limit (349056.0s)
[2026-01-11 13:28:05] 2026-01-11 18:27:17,159 | INFO     | monitor loop #1364: job 0:6965941371 is in state 'finished'
[2026-01-11 13:28:05] 2026-01-11 18:27:17,165 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 13:28:05] 2026-01-11 18:27:17,707 | INFO     | time since job start (32237s) is within the limit (349056.0s)
[2026-01-11 13:28:05] 2026-01-11 18:27:19,670 | INFO     | monitor loop #1365: job 0:6965941371 is in state 'finished'
[2026-01-11 13:28:05] 2026-01-11 18:27:19,670 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 13:28:05] 2026-01-11 18:27:19,714 | INFO     | time since job start (32239s) is within the limit (349056.0s)
[2026-01-11 13:28:05] 2026-01-11 18:27:21,722 | INFO     | time since job start (32241s) is within the limit (349056.0s)
[2026-01-11 13:28:05] 2026-01-11 18:27:22,000 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-11 13:28:05] 2026-01-11 18:27:22,014 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 1696.15495
[2026-01-11 13:28:05] 2026-01-11 18:27:22,042 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6965941371/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 13:28:05] 2026-01-11 18:27:22,043 | INFO     | extracted standard info from prmon json
[2026-01-11 13:28:05] 2026-01-11 18:27:22,043 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 13:28:05] 2026-01-11 18:27:22,043 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 13:28:05] 2026-01-11 18:27:22,044 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 13:28:05] 2026-01-11 18:27:22,044 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 13:28:05] 2026-01-11 18:27:22,057 | INFO     | fitting pss+swap vs Time
[2026-01-11 13:28:05] 2026-01-11 18:27:22,058 | INFO     | sum of square deviations: 45126246294.64646
[2026-01-11 13:28:05] 2026-01-11 18:27:22,071 | INFO     | sum of deviations: 173734202197.23206
[2026-01-11 13:28:05] 2026-01-11 18:27:22,071 | INFO     | mean x: 1768139967.0798478
[2026-01-11 13:28:05] 2026-01-11 18:27:22,072 | INFO     | mean y: 2660317.399239544
[2026-01-11 13:28:05] 2026-01-11 18:27:22,072 | INFO     | intersect: -6804606224.291831
[2026-01-11 13:28:05] 2026-01-11 18:27:22,073 | INFO     | chi2: 3.5975438447224137
[2026-01-11 13:28:05] 2026-01-11 18:27:22,074 | INFO     | sum of square deviations: 43851645650.449036
[2026-01-11 13:28:05] 2026-01-11 18:27:22,086 | INFO     | sum of deviations: 206081074911.62357
[2026-01-11 13:28:05] 2026-01-11 18:27:22,086 | INFO     | mean x: 1768139814.5854127
[2026-01-11 13:28:05] 2026-01-11 18:27:22,087 | INFO     | mean y: 2664154.424184261
[2026-01-11 13:28:05] 2026-01-11 18:27:22,088 | INFO     | intersect: -8306719636.741916
[2026-01-11 13:28:05] 2026-01-11 18:27:22,089 | INFO     | chi2: 2.9107939281964668
[2026-01-11 13:28:05] 2026-01-11 18:27:22,090 | INFO     | current chi2=2.9107939281964668 (change=19.08941061367208 %)
[2026-01-11 13:28:05] 2026-01-11 18:27:22,090 | INFO     | right removable region: 520
[2026-01-11 13:28:05] 2026-01-11 18:27:22,099 | INFO     | sum of square deviations: 43851459600.44904
[2026-01-11 13:28:05] 2026-01-11 18:27:22,126 | INFO     | sum of deviations: 31527980782.700623
[2026-01-11 13:28:05] 2026-01-11 18:27:22,127 | INFO     | mean x: 1768140119.5854127
[2026-01-11 13:28:05] 2026-01-11 18:27:22,127 | INFO     | mean y: 2677296.2763915546
[2026-01-11 13:28:05] 2026-01-11 18:27:22,127 | INFO     | intersect: -1268566311.5610094
[2026-01-11 13:28:05] 2026-01-11 18:27:22,128 | INFO     | chi2: 1.031602933249256
[2026-01-11 13:28:05] 2026-01-11 18:27:22,128 | INFO     | current chi2=1.031602933249256 (change=71.32479886902242 %)
[2026-01-11 13:28:05] 2026-01-11 18:27:22,134 | INFO     | sum of square deviations: 42600905918.71911
[2026-01-11 13:28:05] 2026-01-11 18:27:22,151 | INFO     | sum of deviations: -10691456962.184116
[2026-01-11 13:28:05] 2026-01-11 18:27:22,161 | INFO     | mean x: 1768140272.0910852
[2026-01-11 13:28:05] 2026-01-11 18:27:22,161 | INFO     | mean y: 2682437.0251937984
[2026-01-11 13:28:05] 2026-01-11 18:27:22,161 | INFO     | intersect: 446428766.2284847
[2026-01-11 13:28:05] 2026-01-11 18:27:22,163 | INFO     | chi2: 0.8212732790371946
[2026-01-11 13:28:05] 2026-01-11 18:27:22,170 | INFO     | current chi2=0.8212732790371946 (change=20.38862506425634 %)
[2026-01-11 13:28:05] 2026-01-11 18:27:22,170 | INFO     | left removable region: 20
[2026-01-11 13:28:05] 2026-01-11 18:27:22,171 | INFO     | sum of square deviations: 38759679176.19801
[2026-01-11 13:28:05] 2026-01-11 18:27:22,185 | INFO     | sum of deviations: 1748367714.134005
[2026-01-11 13:28:05] 2026-01-11 18:27:22,190 | INFO     | mean x: 1768140394.098
[2026-01-11 13:28:05] 2026-01-11 18:27:22,190 | INFO     | mean y: 2689125.834
[2026-01-11 13:28:05] 2026-01-11 18:27:22,190 | INFO     | intersect: -77067973.41968775
[2026-01-11 13:28:05] 2026-01-11 18:27:22,192 | INFO     | chi2: 0.05543043919492728
[2026-01-11 13:28:05] 2026-01-11 18:27:22,192 | INFO     | current memory leak: 0.05 B/s (using 500 data points, chi2=0.06)
[2026-01-11 13:28:05] 2026-01-11 18:27:22,194 | INFO     | could have reported an average CPU frequency of 1720 MHz (21 samples)
[2026-01-11 13:28:05] 2026-01-11 18:27:22,194 | INFO     | ..............................
[2026-01-11 13:28:05] 2026-01-11 18:27:22,194 | INFO     | . Timing measurements:
[2026-01-11 13:28:05] 2026-01-11 18:27:22,195 | INFO     | . get job = 0 s
[2026-01-11 13:28:05] 2026-01-11 18:27:22,195 | INFO     | . initial setup = 4 s
[2026-01-11 13:28:05] 2026-01-11 18:27:22,195 | INFO     | . payload setup = 43 s
[2026-01-11 13:28:05] 2026-01-11 18:27:22,195 | INFO     | . stage-in = 0 s
[2026-01-11 13:28:05] 2026-01-11 18:27:22,195 | INFO     | . payload execution = 32088 s
[2026-01-11 13:28:05] 2026-01-11 18:27:22,195 | INFO     | . stage-out = 3 s
[2026-01-11 13:28:05] 2026-01-11 18:27:22,195 | INFO     | . log creation = 0 s
[2026-01-11 13:28:05] 2026-01-11 18:27:22,195 | INFO     | ..............................
[2026-01-11 13:28:05] 2026-01-11 18:27:22,386 | INFO     | 
[2026-01-11 13:28:05] 2026-01-11 18:27:22,387 | INFO     | job summary report
[2026-01-11 13:28:05] 2026-01-11 18:27:22,387 | INFO     | --------------------------------------------------
[2026-01-11 13:28:05] 2026-01-11 18:27:22,387 | INFO     | PanDA job id: 6965941371
[2026-01-11 13:28:05] 2026-01-11 18:27:22,387 | INFO     | task id: 48039250
[2026-01-11 13:28:05] 2026-01-11 18:27:22,387 | INFO     | errors: (none)
[2026-01-11 13:28:05] 2026-01-11 18:27:22,388 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 13:28:05] 2026-01-11 18:27:22,388 | INFO     | pilot state: finished 
[2026-01-11 13:28:05] 2026-01-11 18:27:22,388 | INFO     | transexitcode: 0
[2026-01-11 13:28:05] 2026-01-11 18:27:22,388 | INFO     | exeerrorcode: 0
[2026-01-11 13:28:05] 2026-01-11 18:27:22,388 | INFO     | exeerrordiag: 
[2026-01-11 13:28:05] 2026-01-11 18:27:22,388 | INFO     | exitcode: 0
[2026-01-11 13:28:05] 2026-01-11 18:27:22,388 | INFO     | exitmsg: OK
[2026-01-11 13:28:05] 2026-01-11 18:27:22,388 | INFO     | cpuconsumptiontime: 100301 s
[2026-01-11 13:28:05] 2026-01-11 18:27:22,388 | INFO     | nevents: 400
[2026-01-11 13:28:05] 2026-01-11 18:27:22,388 | INFO     | neventsw: 0
[2026-01-11 13:28:05] 2026-01-11 18:27:22,389 | INFO     | pid: 1057691
[2026-01-11 13:28:05] 2026-01-11 18:27:22,389 | INFO     | pgrp: 1057691
[2026-01-11 13:28:05] 2026-01-11 18:27:22,389 | INFO     | corecount: 10
[2026-01-11 13:28:05] 2026-01-11 18:27:22,389 | INFO     | event service: False
[2026-01-11 13:28:05] 2026-01-11 18:27:22,389 | INFO     | sizes: {0: 2283796, 1: 2283852, 2: 2283908, 3: 2284079, 4: 2284107, 5: 2284135, 16: 2284319, 27: 2284347, 36: 2284637, 39: 2284665, 32136: 2321684, 32137: 2321963,
[2026-01-11 13:28:05] 2026-01-11 18:27:22,389 | INFO     | --------------------------------------------------
[2026-01-11 13:28:05] 2026-01-11 18:27:22,389 | INFO     | 
[2026-01-11 13:28:05] 2026-01-11 18:27:22,389 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-11 13:28:05] 2026-01-11 18:27:22,426 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,427 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,427 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,427 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,427 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,427 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,427 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,428 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,428 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,428 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,428 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,428 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,428 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,428 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,428 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,429 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,429 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,429 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 13:28:05] 2026-01-11 18:27:22,429 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,429 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 13:28:05] 2026-01-11 18:27:22,429 | INFO     | job 6965941371 has completed (purged errors)
[2026-01-11 13:28:05] 2026-01-11 18:27:22,431 | INFO     | overall cleanup function is called
[2026-01-11 13:28:05] 2026-01-11 18:27:23,444 | INFO     | --- collectZombieJob: --- 10, [1057691]
[2026-01-11 13:28:05] 2026-01-11 18:27:23,444 | INFO     | zombie collector waiting for pid 1057691
[2026-01-11 13:28:05] 2026-01-11 18:27:23,444 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 13:28:05] 2026-01-11 18:27:23,445 | INFO     | collected zombie processes
[2026-01-11 13:28:05] 2026-01-11 18:27:23,445 | INFO     | will attempt to kill all subprocesses of pid=1057691
[2026-01-11 13:28:05] 2026-01-11 18:27:24,949 | INFO     | process IDs to be killed: [1057691] (in reverse order)
[2026-01-11 13:28:05] 2026-01-11 18:27:25,525 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 13:28:05] 2026-01-11 18:27:25,525 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 13:28:05] 2026-01-11 18:27:25,603 | INFO     | did not find any defunct processes belonging to 1057691
[2026-01-11 13:28:05] 2026-01-11 18:27:25,740 | INFO     | did not find any defunct processes belonging to 1057691
[2026-01-11 13:28:05] 2026-01-11 18:27:25,741 | INFO     | ready for new job
[2026-01-11 13:28:05] 2026-01-11 18:27:25,741 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 13:28:05] 2026-01-11 18:27:25,745 | INFO     | ***************************************
[2026-01-11 13:28:05] 2026-01-11 18:27:25,745 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 13:28:05] 2026-01-11 18:27:25,745 | INFO     | ***************************************
[2026-01-11 13:28:05] 2026-01-11 18:27:25,745 | INFO     | 
[2026-01-11 13:28:05] 2026-01-11 18:27:25,753 | INFO     | architecture information:
[2026-01-11 13:28:05] 2026-01-11 18:27:25,753 | INFO     | executing command: cat /etc/os-release
[2026-01-11 13:28:05] 2026-01-11 18:27:25,843 | INFO     | cat /etc/os-release:
[2026-01-11 13:28:05] NAME="CentOS Linux"
[2026-01-11 13:28:05] VERSION="7 (Core)"
[2026-01-11 13:28:05] ID="centos"
[2026-01-11 13:28:05] ID_LIKE="rhel fedora"
[2026-01-11 13:28:05] VERSION_ID="7"
[2026-01-11 13:28:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 13:28:05] ANSI_COLOR="0;31"
[2026-01-11 13:28:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 13:28:05] HOME_URL="https://www.centos.org/"
[2026-01-11 13:28:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 13:28:05] 
[2026-01-11 13:28:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 13:28:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 13:28:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 13:28:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 13:28:05] 
[2026-01-11 13:28:05] 2026-01-11 18:27:25,844 | INFO     | ***************************************
[2026-01-11 13:28:05] 2026-01-11 18:27:26,347 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-11 13:28:05] 2026-01-11 18:27:26,424 | INFO     | sufficient remaining disk space (75018272768 B)
[2026-01-11 13:28:05] 2026-01-11 18:27:26,425 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 13:28:05] 2026-01-11 18:27:26,425 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 13:28:05] 2026-01-11 18:27:26,425 | INFO     | update_server=False
[2026-01-11 13:28:05] 2026-01-11 18:27:26,425 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 13:28:05] 2026-01-11 18:27:26,426 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 13:28:05] 2026-01-11 18:27:26,426 | INFO     | aborting loop
[2026-01-11 13:28:05] 2026-01-11 18:27:27,112 | INFO     | all job control threads have been joined
[2026-01-11 13:28:05] 2026-01-11 18:27:27,147 | INFO     | all data control threads have been joined
[2026-01-11 13:28:05] 2026-01-11 18:27:27,424 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 13:28:05] 2026-01-11 18:27:27,432 | INFO     | [job] retrieve thread has finished
[2026-01-11 13:28:05] 2026-01-11 18:27:27,455 | INFO     | [job] job monitor thread has finished
[2026-01-11 13:28:05] 2026-01-11 18:27:27,504 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 13:28:05] 2026-01-11 18:27:27,528 | INFO     | all payload control threads have been joined
[2026-01-11 13:28:05] 2026-01-11 18:27:27,578 | INFO     | [payload] validate_post thread has finished
[2026-01-11 13:28:05] 2026-01-11 18:27:27,914 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 13:28:05] 2026-01-11 18:27:28,122 | INFO     | [job] control thread has finished
[2026-01-11 13:28:05] 2026-01-11 18:27:28,153 | INFO     | [data] control thread has finished
[2026-01-11 13:28:05] 2026-01-11 18:27:28,317 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 13:28:05] 2026-01-11 18:27:28,377 | INFO     | [payload] failed_post thread has finished
[2026-01-11 13:28:05] 2026-01-11 18:27:28,434 | INFO     | [job] queue monitor thread has finished
[2026-01-11 13:28:05] 2026-01-11 18:27:28,475 | INFO     | [job] validate thread has finished
[2026-01-11 13:28:05] 2026-01-11 18:27:28,534 | INFO     | [payload] control thread has finished
[2026-01-11 13:28:05] 2026-01-11 18:27:28,633 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 13:28:05] 2026-01-11 18:27:28,634 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 13:28:05] 2026-01-11 18:27:28,656 | INFO     | [data] copytool_in thread has finished
[2026-01-11 13:28:05] 2026-01-11 18:27:29,099 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 13:28:05] 2026-01-11 18:27:29,921 | INFO     | [data] copytool_out thread has finished
[2026-01-11 13:28:05] 2026-01-11 18:27:33,114 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 13:28:05] 2026-01-11 18:27:56,286 | INFO     | PID=1033921 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 13:28:05] 2026-01-11 18:27:56,287 | INFO     | .. there are 74 such processes running
[2026-01-11 13:28:05] 2026-01-11 18:27:56,287 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 13:28:05] 2026-01-11 18:27:56,287 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 13:28:05] 2026-01-11 18:27:56,287 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 13:28:05] 2026-01-11 18:27:58,555 | INFO     | [monitor] cgroup control has ended
[2026-01-11 13:28:05] 2026-01-11 18:27:59,631 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140693028599616)>', '<ExcThread(monitor, started 140692315694848)>']
[2026-01-11 13:28:05] 2026-01-11 18:28:00,312 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 13:28:05] 2026-01-11 18:28:00,312 | INFO     | [monitor] control thread has ended
[2026-01-11 13:28:05] 2026-01-11 18:28:04,661 | INFO     | all workflow threads have been joined
[2026-01-11 13:28:05] 2026-01-11 18:28:04,661 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 13:28:05] 2026-01-11 18:28:04,662 | INFO     | traces error code: 0
[2026-01-11 13:28:05] 2026-01-11 18:28:04,663 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 13:28:05] 2026-01-11 18:28:04,893 [wrapper] ==== pilot stdout END ====
[2026-01-11 13:28:05] 2026-01-11 18:28:04,904 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 13:28:05] 2026-01-11 18:28:04,914 [wrapper] pilotpid: 1033921
[2026-01-11 13:28:05] 2026-01-11 18:28:04,919 [wrapper] Pilot exit status: 0
[2026-01-11 13:28:05] 2026-01-11 18:28:05,036 [wrapper] pandaids: 6965941371 6965941371
[2026-01-11 13:28:05] 2026-01-11 18:28:05,458 [wrapper] cleanup supervisor_pilot 3643801 1033922
[2026-01-11 13:28:05] 2026-01-11 18:28:05,470 [wrapper] Test setup, not cleaning
[2026-01-11 13:28:05] 2026-01-11 18:28:05,476 [wrapper] apfmon messages muted
[2026-01-11 13:28:05] 2026-01-11 18:28:05,480 [wrapper] ==== wrapper stdout END ====
[2026-01-11 13:28:05] 2026-01-11 18:28:05,484 [wrapper] ==== wrapper stderr END ====
[2026-01-11 13:28:05]  *** Error codes and diagnostics ***
[2026-01-11 13:28:05]     "exeErrorCode": 0,
[2026-01-11 13:28:05]     "exeErrorDiag": "",
[2026-01-11 13:28:05]     "pilotErrorCode": 0,
[2026-01-11 13:28:05]     "pilotErrorDiag": "",
[2026-01-11 13:28:05]  *** Listing of results directory ***
[2026-01-11 13:28:05] total 2055068
[2026-01-11 13:28:05] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-11 13:28:05] -rw-r--r--. 1 boincer umatlas    579449 Jan 10 22:29 pilot3.tar.gz
[2026-01-11 13:28:05] -rwx------. 1 boincer umatlas     36322 Jan 10 22:33 runpilot2-wrapper.sh
[2026-01-11 13:28:05] -rw-r--r--. 1 boincer umatlas      5112 Jan 10 22:33 queuedata.json
[2026-01-11 13:28:05] -rw-r--r--. 1 boincer umatlas       100 Jan 10 22:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 13:28:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 22:37 run_atlas
[2026-01-11 13:28:05] -rw-r--r--. 1 boincer umatlas       105 Jan 10 22:37 job.xml
[2026-01-11 13:28:05] -rw-r--r--. 3 boincer umatlas 915501182 Jan 10 22:37 EVNT.48039248._000028.pool.root.1
[2026-01-11 13:28:05] -rw-r--r--. 3 boincer umatlas 915501182 Jan 10 22:37 ATLAS.root_0
[2026-01-11 13:28:05] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 22:37 start_atlas.sh
[2026-01-11 13:28:05] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 22:37 shared
[2026-01-11 13:28:05] -rw-r--r--. 2 boincer umatlas    592419 Jan 10 22:37 input.tar.gz
[2026-01-11 13:28:05] -rw-r--r--. 1 boincer umatlas         0 Jan 10 22:37 boinc_lockfile
[2026-01-11 13:28:05] -rw-r--r--. 1 boincer umatlas      2590 Jan 11 04:28 pandaJob.out
[2026-01-11 13:28:05] -rw-------. 1 boincer umatlas        57 Jan 11 04:28 setup.sh.local
[2026-01-11 13:28:05] -rw-------. 1 boincer umatlas    989548 Jan 11 04:29 agis_schedconf.cvmfs.json
[2026-01-11 13:28:05] -rw-------. 1 boincer umatlas 261709945 Jan 11 13:25 HITS.48039250._006935.pool.root.1
[2026-01-11 13:28:05] -rw-r--r--. 1 boincer umatlas       533 Jan 11 13:25 boinc_task_state.xml
[2026-01-11 13:28:05] -rw-------. 1 boincer umatlas      1042 Jan 11 13:26 memory_monitor_summary.json
[2026-01-11 13:28:05] -rw-------. 1 boincer umatlas   1516240 Jan 11 13:26 agis_ddmendpoints.agis.ALL.json
[2026-01-11 13:28:05] -rw-------. 1 boincer umatlas    660604 Jan 11 13:26 log.48039250._006935.job.log.tgz.1
[2026-01-11 13:28:05] -rw-------. 1 boincer umatlas      7815 Jan 11 13:27 heartbeat.json
[2026-01-11 13:28:05] -rw-------. 1 boincer umatlas        96 Jan 11 13:27 pilot_heartbeat.json
[2026-01-11 13:28:05] -rw-r--r--. 1 boincer umatlas      6841 Jan 11 13:27 init_data.xml
[2026-01-11 13:28:05] -rw-r--r--. 1 boincer umatlas      8192 Jan 11 13:28 boinc_mmap_file
[2026-01-11 13:28:05] -rw-r--r--. 1 boincer umatlas        29 Jan 11 13:28 wrapper_checkpoint.txt
[2026-01-11 13:28:05] -rw-------. 1 boincer umatlas      4824 Jan 11 13:28 pilotlog.txt
[2026-01-11 13:28:05] -rw-------. 1 boincer umatlas   3213394 Jan 11 13:28 log.48039250._006935.job.log.1
[2026-01-11 13:28:05] -rw-------. 1 boincer umatlas       357 Jan 11 13:28 output.list
[2026-01-11 13:28:05] -rw-r--r--. 1 boincer umatlas       620 Jan 11 13:28 runtime_log
[2026-01-11 13:28:05] -rw-------. 1 boincer umatlas   3891200 Jan 11 13:28 result.tar.gz
[2026-01-11 13:28:05] -rw-r--r--. 1 boincer umatlas      9415 Jan 11 13:28 runtime_log.err
[2026-01-11 13:28:05] -rw-------. 1 boincer umatlas       782 Jan 11 13:28 OzdMDmMO1y8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2ghKDmMXwCVn.diag
[2026-01-11 13:28:05] -rw-r--r--. 1 boincer umatlas     23727 Jan 11 13:28 stderr.txt
[2026-01-11 13:28:05] HITS file was successfully produced:
[2026-01-11 13:28:05] -rw-------. 1 boincer umatlas 261709945 Jan 11 13:25 shared/HITS.pool.root.1
[2026-01-11 13:28:05]  *** Contents of shared directory: ***
[2026-01-11 13:28:05] total 1154032
[2026-01-11 13:28:05] -rw-r--r--. 3 boincer umatlas 915501182 Jan 10 22:37 ATLAS.root_0
[2026-01-11 13:28:05] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 22:37 start_atlas.sh
[2026-01-11 13:28:05] -rw-r--r--. 2 boincer umatlas    592419 Jan 10 22:37 input.tar.gz
[2026-01-11 13:28:05] -rw-------. 1 boincer umatlas 261709945 Jan 11 13:25 HITS.pool.root.1
[2026-01-11 13:28:05] -rw-------. 1 boincer umatlas   3891200 Jan 11 13:28 result.tar.gz
13:28:06 (1019917): run_atlas exited; CPU time 102797.613098
13:28:06 (1019917): called boinc_finish(0)

</stderr_txt>
]]>

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