Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:35:21 (434388): wrapper (7.7.26015): starting
04:35:21 (434388): wrapper: running run_atlas (--nthreads 4)
[2026-01-11 04:35:21] Arguments: --nthreads 4
[2026-01-11 04:35:21] Threads: 4
[2026-01-11 04:35:21] Checking for CVMFS
[2026-01-11 04:35:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 04:35:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 04:35:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 04:35:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 04:35:24] 2.9.2.0 434585 0 30036 155002 3 1 18683809 36864001 0 130560 0 0 0.000 1335 16280 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-11 04:35:24] CVMFS is ok
[2026-01-11 04:35:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 04:35:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 04:35:24] Further information can be found at the LHC@home message board.
[2026-01-11 04:35:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 04:35:24] Checking for apptainer binary...
[2026-01-11 04:35:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 04:35:24] Running /usr/bin/apptainer --version
[2026-01-11 04:35:24] apptainer version 1.4.1-1.1
[2026-01-11 04:35:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 04:35:24] madmaxA277
[2026-01-11 04:35:24] apptainer works
[2026-01-11 04:35:24] Set ATHENA_PROC_NUMBER=4
[2026-01-11 04:35:24] Set ATHENA_CORE_NUMBER=4
[2026-01-11 04:35:24] Starting ATLAS job with PandaID=6965941327
[2026-01-11 04:35:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 06:12:49]  *** The last 200 lines of the pilot log: ***
[2026-01-11 06:12:49] 2026-01-11 05:12:18,002 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 06:12:49] 2026-01-11 05:12:18,002 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 06:12:49] 2026-01-11 05:12:18,002 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 06:12:49] 2026-01-11 05:12:18,002 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 06:12:49] 2026-01-11 05:12:18,002 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 06:12:49] 2026-01-11 05:12:18,002 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 06:12:49] 2026-01-11 05:12:18,002 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 06:12:49] 2026-01-11 05:12:18,002 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 06:12:49] 2026-01-11 05:12:18,002 | INFO     | job 6965941327 has completed (purged errors)
[2026-01-11 06:12:49] 2026-01-11 05:12:18,002 | INFO     | overall cleanup function is called
[2026-01-11 06:12:49] 2026-01-11 05:12:19,009 | INFO     | --- collectZombieJob: --- 10, [445294]
[2026-01-11 06:12:49] 2026-01-11 05:12:19,009 | INFO     | zombie collector waiting for pid 445294
[2026-01-11 06:12:49] 2026-01-11 05:12:19,009 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 06:12:49] 2026-01-11 05:12:19,009 | INFO     | collected zombie processes
[2026-01-11 06:12:49] 2026-01-11 05:12:19,009 | INFO     | will attempt to kill all subprocesses of pid=445294
[2026-01-11 06:12:49] 2026-01-11 05:12:19,054 | INFO     | process IDs to be killed: [445294] (in reverse order)
[2026-01-11 06:12:49] 2026-01-11 05:12:19,084 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 06:12:49] 2026-01-11 05:12:19,085 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 06:12:49] 2026-01-11 05:12:19,087 | INFO     | did not find any defunct processes belonging to 445294
[2026-01-11 06:12:49] 2026-01-11 05:12:19,088 | INFO     | did not find any defunct processes belonging to 445294
[2026-01-11 06:12:49] 2026-01-11 05:12:19,088 | INFO     | ready for new job
[2026-01-11 06:12:49] 2026-01-11 05:12:19,088 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 06:12:49] 2026-01-11 05:12:19,089 | INFO     | ***************************************
[2026-01-11 06:12:49] 2026-01-11 05:12:19,089 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 06:12:49] 2026-01-11 05:12:19,089 | INFO     | ***************************************
[2026-01-11 06:12:49] 2026-01-11 05:12:19,089 | INFO     | 
[2026-01-11 06:12:49] 2026-01-11 05:12:19,090 | INFO     | architecture information:
[2026-01-11 06:12:49] 2026-01-11 05:12:19,090 | INFO     | executing command: cat /etc/os-release
[2026-01-11 06:12:49] 2026-01-11 05:12:19,103 | INFO     | cat /etc/os-release:
[2026-01-11 06:12:49] NAME="CentOS Linux"
[2026-01-11 06:12:49] VERSION="7 (Core)"
[2026-01-11 06:12:49] ID="centos"
[2026-01-11 06:12:49] ID_LIKE="rhel fedora"
[2026-01-11 06:12:49] VERSION_ID="7"
[2026-01-11 06:12:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 06:12:49] ANSI_COLOR="0;31"
[2026-01-11 06:12:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 06:12:49] HOME_URL="https://www.centos.org/"
[2026-01-11 06:12:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 06:12:49] 
[2026-01-11 06:12:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 06:12:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 06:12:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 06:12:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 06:12:49] 
[2026-01-11 06:12:49] 2026-01-11 05:12:19,103 | INFO     | ***************************************
[2026-01-11 06:12:49] 2026-01-11 05:12:19,606 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-11 06:12:49] 2026-01-11 05:12:19,620 | INFO     | sufficient remaining disk space (340745256960 B)
[2026-01-11 06:12:49] 2026-01-11 05:12:19,620 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 06:12:49] 2026-01-11 05:12:19,620 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 06:12:49] 2026-01-11 05:12:19,620 | INFO     | update_server=False
[2026-01-11 06:12:49] 2026-01-11 05:12:19,620 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 06:12:49] 2026-01-11 05:12:19,620 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 06:12:49] 2026-01-11 05:12:19,621 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 06:12:49] 2026-01-11 05:12:19,839 | INFO     | all job control threads have been joined
[2026-01-11 06:12:49] 2026-01-11 05:12:19,905 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-11 06:12:49] 2026-01-11 05:12:19,905 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-11 06:12:49] 2026-01-11 05:12:19,905 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 06:12:49] 2026-01-11 05:12:19,905 | INFO     | will abort loop
[2026-01-11 06:12:49] 2026-01-11 05:12:19,918 | INFO     | all data control threads have been joined
[2026-01-11 06:12:49] 2026-01-11 05:12:20,620 | INFO     | all payload control threads have been joined
[2026-01-11 06:12:49] 2026-01-11 05:12:20,626 | INFO     | [job] retrieve thread has finished
[2026-01-11 06:12:49] 2026-01-11 05:12:20,626 | INFO     | [job] queue monitor thread has finished
[2026-01-11 06:12:49] 2026-01-11 05:12:20,690 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 06:12:49] 2026-01-11 05:12:20,844 | INFO     | [job] control thread has finished
[2026-01-11 06:12:49] 2026-01-11 05:12:20,910 | INFO     | [job] job monitor thread has finished
[2026-01-11 06:12:49] 2026-01-11 05:12:20,923 | INFO     | [data] control thread has finished
[2026-01-11 06:12:49] 2026-01-11 05:12:21,304 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 06:12:49] 2026-01-11 05:12:21,535 | INFO     | [payload] failed_post thread has finished
[2026-01-11 06:12:49] 2026-01-11 05:12:21,626 | INFO     | [payload] control thread has finished
[2026-01-11 06:12:49] 2026-01-11 05:12:21,626 | INFO     | [data] copytool_out thread has finished
[2026-01-11 06:12:49] 2026-01-11 05:12:21,640 | INFO     | [job] validate thread has finished
[2026-01-11 06:12:49] 2026-01-11 05:12:21,723 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 06:12:49] 2026-01-11 05:12:21,812 | INFO     | [data] copytool_in thread has finished
[2026-01-11 06:12:49] 2026-01-11 05:12:21,845 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 06:12:49] 2026-01-11 05:12:21,846 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 06:12:49] 2026-01-11 05:12:22,098 | INFO     | [payload] validate_post thread has finished
[2026-01-11 06:12:49] 2026-01-11 05:12:24,696 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 06:12:49] 2026-01-11 05:12:39,313 | INFO     | [monitor] cgroup control has ended
[2026-01-11 06:12:49] 2026-01-11 05:12:40,335 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140574909667136)>', '<ExcThread(monitor, started 140574120199936)>']
[2026-01-11 06:12:49] 2026-01-11 05:12:45,360 | INFO     | all workflow threads have been joined
[2026-01-11 06:12:49] 2026-01-11 05:12:45,360 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 06:12:49] 2026-01-11 05:12:45,361 | INFO     | traces error code: 0
[2026-01-11 06:12:49] 2026-01-11 05:12:45,361 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 06:12:49] 2026-01-11 05:12:49,547 | INFO     | PID=438721 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 06:12:49] 2026-01-11 05:12:49,548 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 06:12:49] 2026-01-11 05:12:49,548 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 06:12:49] 2026-01-11 05:12:49,548 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 06:12:49] 2026-01-11 05:12:49,548 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 06:12:49] 2026-01-11 05:12:49,548 | INFO     | [monitor] control thread has ended
[2026-01-11 06:12:49] 2026-01-11 05:12:49,623 [wrapper] ==== pilot stdout END ====
[2026-01-11 06:12:49] 2026-01-11 05:12:49,627 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 06:12:49] 2026-01-11 05:12:49,631 [wrapper] pilotpid: 438721
[2026-01-11 06:12:49] 2026-01-11 05:12:49,634 [wrapper] Pilot exit status: 0
[2026-01-11 06:12:49] 2026-01-11 05:12:49,644 [wrapper] pandaids: 6965941327
[2026-01-11 06:12:49] 2026-01-11 05:12:49,666 [wrapper] cleanup supervisor_pilot  458105 438722
[2026-01-11 06:12:49] 2026-01-11 05:12:49,669 [wrapper] Test setup, not cleaning
[2026-01-11 06:12:49] 2026-01-11 05:12:49,672 [wrapper] apfmon messages muted
[2026-01-11 06:12:49] 2026-01-11 05:12:49,676 [wrapper] ==== wrapper stdout END ====
[2026-01-11 06:12:49] 2026-01-11 05:12:49,679 [wrapper] ==== wrapper stderr END ====
[2026-01-11 06:12:49]  *** Error codes and diagnostics ***
[2026-01-11 06:12:49]     "exeErrorCode": 0,
[2026-01-11 06:12:49]     "exeErrorDiag": "",
[2026-01-11 06:12:49]     "pilotErrorCode": 0,
[2026-01-11 06:12:49]     "pilotErrorDiag": "",
[2026-01-11 06:12:49]  *** Listing of results directory ***
[2026-01-11 06:12:49] total 1157132
[2026-01-11 06:12:49] -rw-r--r-- 1 boinc boinc    579449 Jan 11 04:29 pilot3.tar.gz
[2026-01-11 06:12:49] -rwx------ 1 boinc boinc     36322 Jan 11 04:33 runpilot2-wrapper.sh
[2026-01-11 06:12:49] -rw-r--r-- 1 boinc boinc      5112 Jan 11 04:33 queuedata.json
[2026-01-11 06:12:49] -rw-r--r-- 1 boinc boinc       100 Jan 11 04:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 06:12:49] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 04:35 run_atlas
[2026-01-11 06:12:49] -rw-r--r-- 1 boinc boinc       105 Jan 11 04:35 job.xml
[2026-01-11 06:12:49] -rw-r--r-- 2 boinc boinc 926061253 Jan 11 04:35 EVNT.48039248._000020.pool.root.1
[2026-01-11 06:12:49] -rw-r--r-- 2 boinc boinc    592414 Jan 11 04:35 input.tar.gz
[2026-01-11 06:12:49] -rw-r--r-- 2 boinc boinc     15847 Jan 11 04:35 start_atlas.sh
[2026-01-11 06:12:49] drwxrwx--x 2 boinc boinc      4096 Jan 11 04:35 shared
[2026-01-11 06:12:49] -rw-r--r-- 1 boinc boinc         0 Jan 11 04:35 boinc_setup_complete
[2026-01-11 06:12:49] -rw-r--r-- 1 boinc boinc      6372 Jan 11 04:35 init_data.xml
[2026-01-11 06:12:49] -rw-r--r-- 1 boinc boinc         0 Jan 11 04:35 boinc_lockfile
[2026-01-11 06:12:49] -rw-r--r-- 1 boinc boinc      2590 Jan 11 04:35 pandaJob.out
[2026-01-11 06:12:49] -rw------- 1 boinc boinc    989548 Jan 11 04:35 agis_schedconf.cvmfs.json
[2026-01-11 06:12:49] -rw------- 1 boinc boinc   1516240 Jan 11 04:35 agis_ddmendpoints.agis.ALL.json
[2026-01-11 06:12:49] drwx------ 5 boinc boinc      4096 Jan 11 04:35 pilot3
[2026-01-11 06:12:49] -rw------- 1 boinc boinc 252708921 Jan 11 06:11 HITS.48039250._006891.pool.root.1
[2026-01-11 06:12:49] -rw-r--r-- 1 boinc boinc       530 Jan 11 06:11 boinc_task_state.xml
[2026-01-11 06:12:49] -rw------- 1 boinc boinc        95 Jan 11 06:12 pilot_heartbeat.json
[2026-01-11 06:12:49] -rw------- 1 boinc boinc      1019 Jan 11 06:12 memory_monitor_summary.json
[2026-01-11 06:12:49] -rw------- 1 boinc boinc    272983 Jan 11 06:12 log.48039250._006891.job.log.tgz.1
[2026-01-11 06:12:49] -rw------- 1 boinc boinc      7763 Jan 11 06:12 heartbeat.json
[2026-01-11 06:12:49] -rw-r--r-- 1 boinc boinc      8192 Jan 11 06:12 boinc_mmap_file
[2026-01-11 06:12:49] -rw-r--r-- 1 boinc boinc        27 Jan 11 06:12 wrapper_checkpoint.txt
[2026-01-11 06:12:49] -rw------- 1 boinc boinc       746 Jan 11 06:12 pilotlog.txt
[2026-01-11 06:12:49] -rw------- 1 boinc boinc    842911 Jan 11 06:12 log.48039250._006891.job.log.1
[2026-01-11 06:12:49] -rw------- 1 boinc boinc       357 Jan 11 06:12 output.list
[2026-01-11 06:12:49] -rw-r--r-- 1 boinc boinc       620 Jan 11 06:12 runtime_log
[2026-01-11 06:12:49] -rw------- 1 boinc boinc   1136640 Jan 11 06:12 result.tar.gz
[2026-01-11 06:12:49] -rw------- 1 boinc boinc       663 Jan 11 06:12 wv8KDmMO1y8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPghKDmPHB8fn.diag
[2026-01-11 06:12:49] -rw-r--r-- 1 boinc boinc      8917 Jan 11 06:12 runtime_log.err
[2026-01-11 06:12:49] -rw-r--r-- 1 boinc boinc     11831 Jan 11 06:12 stderr.txt
[2026-01-11 06:12:49] HITS file was successfully produced:
[2026-01-11 06:12:49] -rw------- 1 boinc boinc 252708921 Jan 11 06:11 shared/HITS.pool.root.1
[2026-01-11 06:12:49]  *** Contents of shared directory: ***
[2026-01-11 06:12:49] total 1152864
[2026-01-11 06:12:49] -rw-r--r-- 2 boinc boinc 926061253 Jan 11 04:35 ATLAS.root_0
[2026-01-11 06:12:49] -rw-r--r-- 2 boinc boinc    592414 Jan 11 04:35 input.tar.gz
[2026-01-11 06:12:49] -rw-r--r-- 2 boinc boinc     15847 Jan 11 04:35 start_atlas.sh
[2026-01-11 06:12:49] -rw------- 1 boinc boinc 252708921 Jan 11 06:11 HITS.pool.root.1
[2026-01-11 06:12:49] -rw------- 1 boinc boinc   1136640 Jan 11 06:12 result.tar.gz
06:12:51 (434388): run_atlas exited; CPU time 22114.344800
06:12:51 (434388): called boinc_finish(0)

</stderr_txt>
]]>

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