Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:37:38 (31421): wrapper (7.7.26015): starting
22:37:38 (31421): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 22:37:38] Arguments: --nthreads 12
[2026-01-10 22:37:38] Threads: 12
[2026-01-10 22:37:38] Checking for CVMFS
[2026-01-10 22:37:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 22:37:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 22:37:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 22:37:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 22:37:38] 2.11.2.0 2925 353391 96736 155002 2 1 15381879 20275201 1 130560 1 147423011 99.955 20470377 15957 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 22:37:38] CVMFS is ok
[2026-01-10 22:37:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 22:37:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 22:37:38] Further information can be found at the LHC@home message board.
[2026-01-10 22:37:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 22:37:38] Checking for apptainer binary...
[2026-01-10 22:37:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 22:37:38] Running /usr/bin/apptainer --version
[2026-01-10 22:37:38] apptainer version 1.3.2-1.el7
[2026-01-10 22:37:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 22:37:40] c-205-10.aglt2.org
[2026-01-10 22:37:40] apptainer works
[2026-01-10 22:37:40] Set ATHENA_PROC_NUMBER=12
[2026-01-10 22:37:40] Set ATHENA_CORE_NUMBER=12
[2026-01-10 22:37:40] Starting ATLAS job with PandaID=6965941348
[2026-01-10 22:37:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 00:16:11]  *** The last 200 lines of the pilot log: ***
[2026-01-11 00:16:11]  protocol_id=None
[2026-01-11 00:16:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-11 00:16:11]  replicas=None
[2026-01-11 00:16:11]  scope=mc23_13p6TeV
[2026-01-11 00:16:11]  status=None
[2026-01-11 00:16:11]  status_code=0
[2026-01-11 00:16:11]  storage_token=
[2026-01-11 00:16:11]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6965941348/log.48039250._006912.job.log.tgz.1
[2026-01-11 00:16:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/23/log.48039250._006912.job.log.tgz.1
[2026-01-11 00:16:11]  workdir=None
[2026-01-11 00:16:11] ]
[2026-01-11 00:16:11] 2026-01-11 05:15:00,922 | INFO     | transferring file log.48039250._006912.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6965941348/log.48039250._006912.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-11 00:16:11] 2026-01-11 05:15:00,922 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6965941348/log.48039250._006912.job.log.tgz.1 /tmp/boinchome/slots/0/log.48039250._006912.job
[2026-01-11 00:16:11] 2026-01-11 05:15:00,945 | INFO     | adding to output.list: log.48039250._006912.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/23/log.48039250._006912.job.log.tg
[2026-01-11 00:16:11] 2026-01-11 05:15:00,946 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 00:16:11] 2026-01-11 05:15:00,946 | INFO     | summary of transferred files:
[2026-01-11 00:16:11] 2026-01-11 05:15:00,946 | INFO     |  -- lfn=log.48039250._006912.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 00:16:11] 2026-01-11 05:15:00,947 | INFO     | stage-out finished correctly
[2026-01-11 00:16:11] 2026-01-11 05:15:01,029 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 00:16:11] 2026-01-11 05:15:01,460 | INFO     | monitor loop #433: job 0:6965941348 is in state 'finished'
[2026-01-11 00:16:11] 2026-01-11 05:15:01,460 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 00:16:11] 2026-01-11 05:15:01,736 | INFO     | job 6965941348 has state=finished
[2026-01-11 00:16:11] 2026-01-11 05:15:01,737 | INFO     | preparing for final server update for job 6965941348 in state='finished'
[2026-01-11 00:16:11] 2026-01-11 05:15:01,737 | INFO     | this job has now completed (state=finished)
[2026-01-11 00:16:11] 2026-01-11 05:15:01,737 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 00:16:11] 2026-01-11 05:15:01,737 | INFO     | log transfer has been attempted: DONE
[2026-01-11 00:16:11] 2026-01-11 05:15:01,738 | INFO     | job 6965941348 has finished - writing final server update
[2026-01-11 00:16:11] 2026-01-11 05:15:01,738 | INFO     | total number of processed events: 400 (read)
[2026-01-11 00:16:11] 2026-01-11 05:15:01,739 | INFO     | executing command: lscpu
[2026-01-11 00:16:11] 2026-01-11 05:15:01,766 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 00:16:11] 2026-01-11 05:15:02,555 | INFO     | time since job start (5826s) is within the limit (349056.0s)
[2026-01-11 00:16:11] 2026-01-11 05:15:03,963 | INFO     | monitor loop #434: job 0:6965941348 is in state 'finished'
[2026-01-11 00:16:11] 2026-01-11 05:15:03,963 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 00:16:11] 2026-01-11 05:15:04,561 | INFO     | time since job start (5828s) is within the limit (349056.0s)
[2026-01-11 00:16:11] 2026-01-11 05:15:06,466 | INFO     | monitor loop #435: job 0:6965941348 is in state 'finished'
[2026-01-11 00:16:11] 2026-01-11 05:15:06,466 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 00:16:11] 2026-01-11 05:15:06,566 | INFO     | time since job start (5830s) is within the limit (349056.0s)
[2026-01-11 00:16:11] 2026-01-11 05:15:06,659 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-11 00:16:11] 2026-01-11 05:15:06,663 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1740.1666666666667
[2026-01-11 00:16:11] 2026-01-11 05:15:06,665 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6965941348/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 00:16:11] 2026-01-11 05:15:06,666 | INFO     | extracted standard info from prmon json
[2026-01-11 00:16:11] 2026-01-11 05:15:06,666 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 00:16:11] 2026-01-11 05:15:06,667 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 00:16:11] 2026-01-11 05:15:06,667 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 00:16:11] 2026-01-11 05:15:06,667 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 00:16:11] 2026-01-11 05:15:06,669 | INFO     | fitting pss+swap vs Time
[2026-01-11 00:16:11] 2026-01-11 05:15:06,669 | INFO     | sum of square deviations: 211285822.0
[2026-01-11 00:16:11] 2026-01-11 05:15:06,669 | INFO     | sum of deviations: -11270561178.000002
[2026-01-11 00:16:11] 2026-01-11 05:15:06,670 | INFO     | mean x: 1768105663.5
[2026-01-11 00:16:11] 2026-01-11 05:15:06,670 | INFO     | mean y: 2822166.409090909
[2026-01-11 00:16:11] 2026-01-11 05:15:06,670 | INFO     | intersect: 94318393656.31737
[2026-01-11 00:16:11] 2026-01-11 05:15:06,670 | INFO     | chi2: 0.09933479439358951
[2026-01-11 00:16:11] 2026-01-11 05:15:06,670 | INFO     | current memory leak: -53.34 B/s (using 88 data points, chi2=0.10)
[2026-01-11 00:16:11] 2026-01-11 05:15:06,670 | INFO     | could have reported an average CPU frequency of 2131 MHz (7 samples)
[2026-01-11 00:16:11] 2026-01-11 05:15:06,671 | INFO     | ..............................
[2026-01-11 00:16:11] 2026-01-11 05:15:06,671 | INFO     | . Timing measurements:
[2026-01-11 00:16:11] 2026-01-11 05:15:06,671 | INFO     | . get job = 0 s
[2026-01-11 00:16:11] 2026-01-11 05:15:06,671 | INFO     | . initial setup = 2 s
[2026-01-11 00:16:11] 2026-01-11 05:15:06,671 | INFO     | . payload setup = 7 s
[2026-01-11 00:16:11] 2026-01-11 05:15:06,671 | INFO     | . stage-in = 0 s
[2026-01-11 00:16:11] 2026-01-11 05:15:06,671 | INFO     | . payload execution = 5795 s
[2026-01-11 00:16:11] 2026-01-11 05:15:06,671 | INFO     | . stage-out = 0 s
[2026-01-11 00:16:11] 2026-01-11 05:15:06,671 | INFO     | . log creation = 0 s
[2026-01-11 00:16:11] 2026-01-11 05:15:06,672 | INFO     | ..............................
[2026-01-11 00:16:11] 2026-01-11 05:15:07,053 | INFO     | 
[2026-01-11 00:16:11] 2026-01-11 05:15:07,054 | INFO     | job summary report
[2026-01-11 00:16:11] 2026-01-11 05:15:07,054 | INFO     | --------------------------------------------------
[2026-01-11 00:16:11] 2026-01-11 05:15:07,054 | INFO     | PanDA job id: 6965941348
[2026-01-11 00:16:11] 2026-01-11 05:15:07,054 | INFO     | task id: 48039250
[2026-01-11 00:16:11] 2026-01-11 05:15:07,054 | INFO     | errors: (none)
[2026-01-11 00:16:11] 2026-01-11 05:15:07,054 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 00:16:11] 2026-01-11 05:15:07,055 | INFO     | pilot state: finished 
[2026-01-11 00:16:11] 2026-01-11 05:15:07,055 | INFO     | transexitcode: 0
[2026-01-11 00:16:11] 2026-01-11 05:15:07,055 | INFO     | exeerrorcode: 0
[2026-01-11 00:16:11] 2026-01-11 05:15:07,055 | INFO     | exeerrordiag: 
[2026-01-11 00:16:11] 2026-01-11 05:15:07,055 | INFO     | exitcode: 0
[2026-01-11 00:16:11] 2026-01-11 05:15:07,055 | INFO     | exitmsg: OK
[2026-01-11 00:16:11] 2026-01-11 05:15:07,056 | INFO     | cpuconsumptiontime: 63840 s
[2026-01-11 00:16:11] 2026-01-11 05:15:07,056 | INFO     | nevents: 400
[2026-01-11 00:16:11] 2026-01-11 05:15:07,056 | INFO     | neventsw: 0
[2026-01-11 00:16:11] 2026-01-11 05:15:07,056 | INFO     | pid: 9375
[2026-01-11 00:16:11] 2026-01-11 05:15:07,056 | INFO     | pgrp: 9375
[2026-01-11 00:16:11] 2026-01-11 05:15:07,056 | INFO     | corecount: 12
[2026-01-11 00:16:11] 2026-01-11 05:15:07,056 | INFO     | event service: False
[2026-01-11 00:16:11] 2026-01-11 05:15:07,056 | INFO     | sizes: {0: 2283798, 1: 2284053, 6: 2284315, 12: 2284343, 5807: 2311021, 5809: 2320203, 5815: 2320341}
[2026-01-11 00:16:11] 2026-01-11 05:15:07,056 | INFO     | --------------------------------------------------
[2026-01-11 00:16:11] 2026-01-11 05:15:07,056 | INFO     | 
[2026-01-11 00:16:11] 2026-01-11 05:15:07,057 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-11 00:16:11] 2026-01-11 05:15:07,081 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,081 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,081 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,082 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,082 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,082 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,082 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,082 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,083 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,083 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,083 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,083 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,083 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,083 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,084 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,084 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,084 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,084 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 00:16:11] 2026-01-11 05:15:07,084 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,084 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 00:16:11] 2026-01-11 05:15:07,085 | INFO     | job 6965941348 has completed (purged errors)
[2026-01-11 00:16:11] 2026-01-11 05:15:07,085 | INFO     | overall cleanup function is called
[2026-01-11 00:16:11] 2026-01-11 05:15:08,093 | INFO     | --- collectZombieJob: --- 10, [9375]
[2026-01-11 00:16:11] 2026-01-11 05:15:08,094 | INFO     | zombie collector waiting for pid 9375
[2026-01-11 00:16:11] 2026-01-11 05:15:08,094 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 00:16:11] 2026-01-11 05:15:08,094 | INFO     | collected zombie processes
[2026-01-11 00:16:11] 2026-01-11 05:15:08,094 | INFO     | will attempt to kill all subprocesses of pid=9375
[2026-01-11 00:16:11] 2026-01-11 05:15:08,184 | INFO     | process IDs to be killed: [9375] (in reverse order)
[2026-01-11 00:16:11] 2026-01-11 05:15:08,236 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 00:16:11] 2026-01-11 05:15:08,236 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 00:16:11] 2026-01-11 05:15:08,240 | INFO     | did not find any defunct processes belonging to 9375
[2026-01-11 00:16:11] 2026-01-11 05:15:08,244 | INFO     | did not find any defunct processes belonging to 9375
[2026-01-11 00:16:11] 2026-01-11 05:15:08,244 | INFO     | ready for new job
[2026-01-11 00:16:11] 2026-01-11 05:15:08,244 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 00:16:11] 2026-01-11 05:15:08,246 | INFO     | ***************************************
[2026-01-11 00:16:11] 2026-01-11 05:15:08,246 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 00:16:11] 2026-01-11 05:15:08,246 | INFO     | ***************************************
[2026-01-11 00:16:11] 2026-01-11 05:15:08,246 | INFO     | 
[2026-01-11 00:16:11] 2026-01-11 05:15:08,247 | INFO     | architecture information:
[2026-01-11 00:16:11] 2026-01-11 05:15:08,247 | INFO     | executing command: cat /etc/os-release
[2026-01-11 00:16:11] 2026-01-11 05:15:08,262 | INFO     | cat /etc/os-release:
[2026-01-11 00:16:11] NAME="CentOS Linux"
[2026-01-11 00:16:11] VERSION="7 (Core)"
[2026-01-11 00:16:11] ID="centos"
[2026-01-11 00:16:11] ID_LIKE="rhel fedora"
[2026-01-11 00:16:11] VERSION_ID="7"
[2026-01-11 00:16:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 00:16:11] ANSI_COLOR="0;31"
[2026-01-11 00:16:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 00:16:11] HOME_URL="https://www.centos.org/"
[2026-01-11 00:16:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 00:16:11] 
[2026-01-11 00:16:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 00:16:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 00:16:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 00:16:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 00:16:11] 
[2026-01-11 00:16:11] 2026-01-11 05:15:08,262 | INFO     | ***************************************
[2026-01-11 00:16:11] 2026-01-11 05:15:08,765 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-11 00:16:11] 2026-01-11 05:15:08,781 | INFO     | sufficient remaining disk space (27866955776 B)
[2026-01-11 00:16:11] 2026-01-11 05:15:08,781 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 00:16:11] 2026-01-11 05:15:08,781 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 00:16:11] 2026-01-11 05:15:08,782 | INFO     | update_server=False
[2026-01-11 00:16:11] 2026-01-11 05:15:08,782 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 00:16:11] 2026-01-11 05:15:08,820 | INFO     | all data control threads have been joined
[2026-01-11 00:16:11] 2026-01-11 05:15:08,969 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-11 00:16:11] 2026-01-11 05:15:08,969 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-11 00:16:11] 2026-01-11 05:15:08,969 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 00:16:11] 2026-01-11 05:15:08,969 | INFO     | will abort loop
[2026-01-11 00:16:11] 2026-01-11 05:15:09,038 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 00:16:11] 2026-01-11 05:15:09,255 | INFO     | all job control threads have been joined
[2026-01-11 00:16:11] 2026-01-11 05:15:09,787 | INFO     | [job] retrieve thread has finished
[2026-01-11 00:16:11] 2026-01-11 05:15:09,825 | INFO     | [data] control thread has finished
[2026-01-11 00:16:11] 2026-01-11 05:15:09,901 | INFO     | all payload control threads have been joined
[2026-01-11 00:16:11] 2026-01-11 05:15:09,911 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 00:16:11] 2026-01-11 05:15:09,950 | INFO     | [payload] validate_post thread has finished
[2026-01-11 00:16:11] 2026-01-11 05:15:09,973 | INFO     | [job] job monitor thread has finished
[2026-01-11 00:16:11] 2026-01-11 05:15:10,058 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 00:16:11] 2026-01-11 05:15:10,255 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 00:16:11] 2026-01-11 05:15:10,256 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 00:16:11] 2026-01-11 05:15:10,260 | INFO     | [job] control thread has finished
[2026-01-11 00:16:11] 2026-01-11 05:15:10,745 | INFO     | [data] copytool_in thread has finished
[2026-01-11 00:16:11] 2026-01-11 05:15:10,907 | INFO     | [payload] control thread has finished
[2026-01-11 00:16:11] 2026-01-11 05:15:10,945 | INFO     | [job] validate thread has finished
[2026-01-11 00:16:11] 2026-01-11 05:15:10,971 | INFO     | [payload] failed_post thread has finished
[2026-01-11 00:16:11] 2026-01-11 05:15:11,043 | INFO     | [data] copytool_out thread has finished
[2026-01-11 00:16:11] 2026-01-11 05:15:11,614 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 00:16:11] 2026-01-11 05:15:11,763 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 00:16:11] 2026-01-11 05:15:12,769 | INFO     | [job] queue monitor thread has finished
[2026-01-11 00:16:11] 2026-01-11 05:15:15,619 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 00:16:11] 2026-01-11 05:15:39,765 | INFO     | PID=2830 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-11 00:16:11] 2026-01-11 05:15:39,765 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 00:16:11] 2026-01-11 05:15:39,766 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 00:16:11] 2026-01-11 05:15:39,766 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 00:16:11] 2026-01-11 05:16:04,772 | INFO     | [monitor] cgroup control has ended
[2026-01-11 00:16:11] 2026-01-11 05:16:06,063 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140653316257600)>', '<ExcThread(monitor, started 140652528531200)>']
[2026-01-11 00:16:11] 2026-01-11 05:16:06,889 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 00:16:11] 2026-01-11 05:16:06,889 | INFO     | [monitor] control thread has ended
[2026-01-11 00:16:11] 2026-01-11 05:16:11,080 | INFO     | all workflow threads have been joined
[2026-01-11 00:16:11] 2026-01-11 05:16:11,115 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 00:16:11] 2026-01-11 05:16:11,116 | INFO     | traces error code: 0
[2026-01-11 00:16:11] 2026-01-11 05:16:11,116 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 00:16:11] 2026-01-11 05:16:11,208 [wrapper] ==== pilot stdout END ====
[2026-01-11 00:16:11] 2026-01-11 05:16:11,211 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 00:16:11] 2026-01-11 05:16:11,215 [wrapper] pilotpid: 2830
[2026-01-11 00:16:11] 2026-01-11 05:16:11,219 [wrapper] Pilot exit status: 0
[2026-01-11 00:16:11] 2026-01-11 05:16:11,233 [wrapper] pandaids: 6965941348
[2026-01-11 00:16:11] 2026-01-11 05:16:11,275 [wrapper] cleanup supervisor_pilot  8620 2831
[2026-01-11 00:16:11] 2026-01-11 05:16:11,279 [wrapper] Test setup, not cleaning
[2026-01-11 00:16:11] 2026-01-11 05:16:11,283 [wrapper] apfmon messages muted
[2026-01-11 00:16:11] 2026-01-11 05:16:11,287 [wrapper] ==== wrapper stdout END ====
[2026-01-11 00:16:11] 2026-01-11 05:16:11,290 [wrapper] ==== wrapper stderr END ====
[2026-01-11 00:16:11]  *** Error codes and diagnostics ***
[2026-01-11 00:16:11]     "exeErrorCode": 0,
[2026-01-11 00:16:11]     "exeErrorDiag": "",
[2026-01-11 00:16:11]     "pilotErrorCode": 0,
[2026-01-11 00:16:11]     "pilotErrorDiag": "",
[2026-01-11 00:16:11]  *** Listing of results directory ***
[2026-01-11 00:16:11] total 1160480
[2026-01-11 00:16:11] -rw-r--r-- 1 boincer umatlas    579449 Jan 10 22:29 pilot3.tar.gz
[2026-01-11 00:16:11] -rwx------ 1 boincer umatlas     36322 Jan 10 22:33 runpilot2-wrapper.sh
[2026-01-11 00:16:11] -rw-r--r-- 1 boincer umatlas      5112 Jan 10 22:33 queuedata.json
[2026-01-11 00:16:11] -rw-r--r-- 1 boincer umatlas       100 Jan 10 22:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 00:16:11] -rwxr-xr-x 1 boincer umatlas      7986 Jan 10 22:37 run_atlas
[2026-01-11 00:16:11] -rw-r--r-- 1 boincer umatlas       105 Jan 10 22:37 job.xml
[2026-01-11 00:16:11] -rw-r--r-- 2 boincer umatlas 930022336 Jan 10 22:37 EVNT.48039248._000024.pool.root.1
[2026-01-11 00:16:11] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 22:37 start_atlas.sh
[2026-01-11 00:16:11] drwxrwx--x 2 boincer umatlas      4096 Jan 10 22:37 shared
[2026-01-11 00:16:11] -rw-r--r-- 2 boincer umatlas    592417 Jan 10 22:37 input.tar.gz
[2026-01-11 00:16:11] -rw-r--r-- 1 boincer umatlas         0 Jan 10 22:37 boinc_lockfile
[2026-01-11 00:16:11] -rw-r--r-- 1 boincer umatlas      2591 Jan 10 22:37 pandaJob.out
[2026-01-11 00:16:11] -rw------- 1 boincer umatlas        57 Jan 10 22:37 setup.sh.local
[2026-01-11 00:16:11] -rw------- 1 boincer umatlas    989548 Jan 10 22:37 agis_schedconf.cvmfs.json
[2026-01-11 00:16:11] -rw------- 1 boincer umatlas   1516240 Jan 10 22:37 agis_ddmendpoints.agis.ALL.json
[2026-01-11 00:16:11] drwx------ 5 boincer umatlas      4096 Jan 10 22:37 pilot3
[2026-01-11 00:16:11] -rw-r--r-- 1 boincer umatlas      5953 Jan 11 00:10 init_data.xml
[2026-01-11 00:16:11] -rw------- 1 boincer umatlas 251830893 Jan 11 00:14 HITS.48039250._006912.pool.root.1
[2026-01-11 00:16:11] -rw-r--r-- 1 boincer umatlas       531 Jan 11 00:14 boinc_task_state.xml
[2026-01-11 00:16:11] -rw------- 1 boincer umatlas      1047 Jan 11 00:14 memory_monitor_summary.json
[2026-01-11 00:16:11] -rw------- 1 boincer umatlas    445793 Jan 11 00:15 log.48039250._006912.job.log.tgz.1
[2026-01-11 00:16:11] -rw------- 1 boincer umatlas      7849 Jan 11 00:15 heartbeat.json
[2026-01-11 00:16:11] -rw------- 1 boincer umatlas        95 Jan 11 00:15 pilot_heartbeat.json
[2026-01-11 00:16:11] -rw-r--r-- 1 boincer umatlas        27 Jan 11 00:15 wrapper_checkpoint.txt
[2026-01-11 00:16:11] -rw-r--r-- 1 boincer umatlas      8192 Jan 11 00:15 boinc_mmap_file
[2026-01-11 00:16:11] -rw------- 1 boincer umatlas      4931 Jan 11 00:16 pilotlog.txt
[2026-01-11 00:16:11] -rw------- 1 boincer umatlas    830903 Jan 11 00:16 log.48039250._006912.job.log.1
[2026-01-11 00:16:11] -rw------- 1 boincer umatlas       357 Jan 11 00:16 output.list
[2026-01-11 00:16:11] -rw-r--r-- 1 boincer umatlas       620 Jan 11 00:16 runtime_log
[2026-01-11 00:16:11] -rw------- 1 boincer umatlas   1300480 Jan 11 00:16 result.tar.gz
[2026-01-11 00:16:11] -rw-r--r-- 1 boincer umatlas      9344 Jan 11 00:16 runtime_log.err
[2026-01-11 00:16:11] -rw------- 1 boincer umatlas       659 Jan 11 00:16 7loLDmMO1y8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgghKDmprRpen.diag
[2026-01-11 00:16:11] -rw-r--r-- 1 boincer umatlas     21831 Jan 11 00:16 stderr.txt
[2026-01-11 00:16:11] HITS file was successfully produced:
[2026-01-11 00:16:11] -rw------- 1 boincer umatlas 251830893 Jan 11 00:14 shared/HITS.pool.root.1
[2026-01-11 00:16:11]  *** Contents of shared directory: ***
[2026-01-11 00:16:11] total 1156036
[2026-01-11 00:16:11] -rw-r--r-- 2 boincer umatlas 930022336 Jan 10 22:37 ATLAS.root_0
[2026-01-11 00:16:11] -rw-r--r-- 2 boincer umatlas     15847 Jan 10 22:37 start_atlas.sh
[2026-01-11 00:16:11] -rw-r--r-- 2 boincer umatlas    592417 Jan 10 22:37 input.tar.gz
[2026-01-11 00:16:11] -rw------- 1 boincer umatlas 251830893 Jan 11 00:14 HITS.pool.root.1
[2026-01-11 00:16:11] -rw------- 1 boincer umatlas   1300480 Jan 11 00:16 result.tar.gz
00:16:13 (31421): run_atlas exited; CPU time 63713.644300
00:16:13 (31421): called boinc_finish(0)

</stderr_txt>
]]>

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