Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
11:55:26 (1019266): wrapper (7.7.26015): starting
11:55:26 (1019266): wrapper: running run_atlas (--nthreads 4)
[2026-01-11 11:55:26] Arguments: --nthreads 4
[2026-01-11 11:55:26] Threads: 4
[2026-01-11 11:55:26] Checking for CVMFS
[2026-01-11 11:55:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 11:55:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 11:55:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 11:55:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 11:55:27] 2.12.7.0 11818 541 57704 155013 3 253 3996552 6144001 4590 130560 0 2697311 99.993 23665 768 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-11 11:55:27] CVMFS is ok
[2026-01-11 11:55:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 11:55:27] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-11 11:55:27] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-11 11:55:27] Further information can be found at the LHC@home message board.
[2026-01-11 11:55:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 11:55:27] Checking for apptainer binary...
[2026-01-11 11:55:27] apptainer is not installed, using version from CVMFS
[2026-01-11 11:55:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 11:55:27] biggy
[2026-01-11 11:55:27] apptainer works
[2026-01-11 11:55:27] Set ATHENA_PROC_NUMBER=4
[2026-01-11 11:55:27] Set ATHENA_CORE_NUMBER=4
[2026-01-11 11:55:27] Starting ATLAS job with PandaID=6965941357
[2026-01-11 11:55:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/single_8TB/boinc-client/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 13:28:52]  *** The last 200 lines of the pilot log: ***
[2026-01-11 13:28:52]  is_tar=False
[2026-01-11 13:28:52]  lfn=log.48039250._006921.job.log.tgz.1
[2026-01-11 13:28:52]  mtime=0
[2026-01-11 13:28:52]  protocol_id=None
[2026-01-11 13:28:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-11 13:28:52]  replicas=None
[2026-01-11 13:28:52]  scope=mc23_13p6TeV
[2026-01-11 13:28:52]  status=None
[2026-01-11 13:28:52]  status_code=0
[2026-01-11 13:28:52]  storage_token=
[2026-01-11 13:28:52]  surl=/single_8TB/boinc-client/slots/9/PanDA_Pilot-6965941357/log.48039250._006921.job.log.tgz.1
[2026-01-11 13:28:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/26/log.48039250._006921.job.log.tgz.1
[2026-01-11 13:28:52]  workdir=None
[2026-01-11 13:28:52] ]
[2026-01-11 13:28:52] 2026-01-11 12:28:11,097 | INFO     | transferring file log.48039250._006921.job.log.tgz.1 from /single_8TB/boinc-client/slots/9/PanDA_Pilot-6965941357/log.48039250._006921.job.log.tgz.1 to /single_8TB
[2026-01-11 13:28:52] 2026-01-11 12:28:11,097 | INFO     | executing command: /usr/bin/env mv /single_8TB/boinc-client/slots/9/PanDA_Pilot-6965941357/log.48039250._006921.job.log.tgz.1 /single_8TB/boinc-client/slots/9/log.
[2026-01-11 13:28:52] 2026-01-11 12:28:11,107 | INFO     | adding to output.list: log.48039250._006921.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/26/log.48039250._006921.job.log.tg
[2026-01-11 13:28:52] 2026-01-11 12:28:11,108 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-11 13:28:52] 2026-01-11 12:28:11,108 | INFO     | summary of transferred files:
[2026-01-11 13:28:52] 2026-01-11 12:28:11,108 | INFO     |  -- lfn=log.48039250._006921.job.log.tgz.1, status_code=0, status=transferred
[2026-01-11 13:28:52] 2026-01-11 12:28:11,108 | INFO     | stage-out finished correctly
[2026-01-11 13:28:52] 2026-01-11 12:28:11,141 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-11 13:28:52] 2026-01-11 12:28:11,173 | INFO     | job 6965941357 has state=finished
[2026-01-11 13:28:52] 2026-01-11 12:28:11,173 | INFO     | preparing for final server update for job 6965941357 in state='finished'
[2026-01-11 13:28:52] 2026-01-11 12:28:11,173 | INFO     | this job has now completed (state=finished)
[2026-01-11 13:28:52] 2026-01-11 12:28:11,173 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-11 13:28:52] 2026-01-11 12:28:11,173 | INFO     | log transfer has been attempted: DONE
[2026-01-11 13:28:52] 2026-01-11 12:28:11,173 | INFO     | job 6965941357 has finished - writing final server update
[2026-01-11 13:28:52] 2026-01-11 12:28:11,173 | INFO     | total number of processed events: 400 (read)
[2026-01-11 13:28:52] 2026-01-11 12:28:11,174 | INFO     | executing command: lscpu
[2026-01-11 13:28:52] 2026-01-11 12:28:11,191 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-11 13:28:52] 2026-01-11 12:28:11,465 | WARNING  | process 1029785 can no longer be monitored (due to stat problems) - aborting
[2026-01-11 13:28:52] 2026-01-11 12:28:11,465 | INFO     | using path: /single_8TB/boinc-client/slots/9/PanDA_Pilot-6965941357/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 13:28:52] 2026-01-11 12:28:11,555 | INFO     | number of running child processes to parent process 1029785: 1
[2026-01-11 13:28:52] 2026-01-11 12:28:11,555 | INFO     | maximum number of monitored processes: 6
[2026-01-11 13:28:52] 2026-01-11 12:28:11,658 | INFO     | time since job start (5555s) is within the limit (349056.0s)
[2026-01-11 13:28:52] 2026-01-11 12:28:12,786 | INFO     | PID=1023106 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 13:28:52] 2026-01-11 12:28:12,786 | INFO     | .. there are 3 such processes running
[2026-01-11 13:28:52] 2026-01-11 12:28:12,934 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-11 13:28:52] 2026-01-11 12:28:12,936 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 5236.3435625
[2026-01-11 13:28:52] 2026-01-11 12:28:12,938 | INFO     | using path: /single_8TB/boinc-client/slots/9/PanDA_Pilot-6965941357/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 13:28:52] 2026-01-11 12:28:12,939 | INFO     | extracted standard info from prmon json
[2026-01-11 13:28:52] 2026-01-11 12:28:12,939 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 13:28:52] 2026-01-11 12:28:12,939 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 13:28:52] 2026-01-11 12:28:12,939 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 13:28:52] 2026-01-11 12:28:12,939 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 13:28:52] 2026-01-11 12:28:12,940 | INFO     | fitting pss+swap vs Time
[2026-01-11 13:28:52] 2026-01-11 12:28:12,940 | INFO     | sum of square deviations: 183761585.0
[2026-01-11 13:28:52] 2026-01-11 12:28:12,940 | INFO     | sum of deviations: 747970501.5
[2026-01-11 13:28:52] 2026-01-11 12:28:12,940 | INFO     | mean x: 1768131791.5
[2026-01-11 13:28:52] 2026-01-11 12:28:12,940 | INFO     | mean y: 2371331.5595238097
[2026-01-11 13:28:52] 2026-01-11 12:28:12,940 | INFO     | intersect: -7194510556.493132
[2026-01-11 13:28:52] 2026-01-11 12:28:12,940 | INFO     | chi2: 0.004177987157488009
[2026-01-11 13:28:52] 2026-01-11 12:28:12,940 | INFO     | current memory leak: 4.07 B/s (using 84 data points, chi2=0.00)
[2026-01-11 13:28:52] 2026-01-11 12:28:12,940 | INFO     | could have reported an average CPU frequency of 5237 MHz (7 samples)
[2026-01-11 13:28:52] 2026-01-11 12:28:12,940 | INFO     | ..............................
[2026-01-11 13:28:52] 2026-01-11 12:28:12,940 | INFO     | . Timing measurements:
[2026-01-11 13:28:52] 2026-01-11 12:28:12,941 | INFO     | . get job = 0 s
[2026-01-11 13:28:52] 2026-01-11 12:28:12,941 | INFO     | . initial setup = 1 s
[2026-01-11 13:28:52] 2026-01-11 12:28:12,941 | INFO     | . payload setup = 2 s
[2026-01-11 13:28:52] 2026-01-11 12:28:12,941 | INFO     | . stage-in = 0 s
[2026-01-11 13:28:52] 2026-01-11 12:28:12,941 | INFO     | . payload execution = 5534 s
[2026-01-11 13:28:52] 2026-01-11 12:28:12,941 | INFO     | . stage-out = 0 s
[2026-01-11 13:28:52] 2026-01-11 12:28:12,941 | INFO     | . log creation = 0 s
[2026-01-11 13:28:52] 2026-01-11 12:28:12,941 | INFO     | ..............................
[2026-01-11 13:28:52] 2026-01-11 12:28:13,351 | INFO     | 
[2026-01-11 13:28:52] 2026-01-11 12:28:13,351 | INFO     | job summary report
[2026-01-11 13:28:52] 2026-01-11 12:28:13,351 | INFO     | --------------------------------------------------
[2026-01-11 13:28:52] 2026-01-11 12:28:13,351 | INFO     | PanDA job id: 6965941357
[2026-01-11 13:28:52] 2026-01-11 12:28:13,351 | INFO     | task id: 48039250
[2026-01-11 13:28:52] 2026-01-11 12:28:13,351 | INFO     | errors: (none)
[2026-01-11 13:28:52] 2026-01-11 12:28:13,351 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 13:28:52] 2026-01-11 12:28:13,351 | INFO     | pilot state: finished 
[2026-01-11 13:28:52] 2026-01-11 12:28:13,351 | INFO     | transexitcode: 0
[2026-01-11 13:28:52] 2026-01-11 12:28:13,352 | INFO     | exeerrorcode: 0
[2026-01-11 13:28:52] 2026-01-11 12:28:13,352 | INFO     | exeerrordiag: 
[2026-01-11 13:28:52] 2026-01-11 12:28:13,352 | INFO     | exitcode: 0
[2026-01-11 13:28:52] 2026-01-11 12:28:13,352 | INFO     | exitmsg: OK
[2026-01-11 13:28:52] 2026-01-11 12:28:13,352 | INFO     | cpuconsumptiontime: 21525 s
[2026-01-11 13:28:52] 2026-01-11 12:28:13,352 | INFO     | nevents: 400
[2026-01-11 13:28:52] 2026-01-11 12:28:13,352 | INFO     | neventsw: 0
[2026-01-11 13:28:52] 2026-01-11 12:28:13,352 | INFO     | pid: 1029785
[2026-01-11 13:28:52] 2026-01-11 12:28:13,352 | INFO     | pgrp: 1029785
[2026-01-11 13:28:52] 2026-01-11 12:28:13,352 | INFO     | corecount: 4
[2026-01-11 13:28:52] 2026-01-11 12:28:13,352 | INFO     | event service: False
[2026-01-11 13:28:52] 2026-01-11 12:28:13,352 | INFO     | sizes: {0: 2283808, 1: 2284063, 3: 2284325, 11: 2284353, 5540: 2311115, 5542: 2320317, 5543: 2320455}
[2026-01-11 13:28:52] 2026-01-11 12:28:13,352 | INFO     | --------------------------------------------------
[2026-01-11 13:28:52] 2026-01-11 12:28:13,352 | INFO     | 
[2026-01-11 13:28:52] 2026-01-11 12:28:13,352 | INFO     | executing command: ls -lF /single_8TB/boinc-client/slots/9
[2026-01-11 13:28:52] 2026-01-11 12:28:13,370 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | job 6965941357 has completed (purged errors)
[2026-01-11 13:28:52] 2026-01-11 12:28:13,371 | INFO     | overall cleanup function is called
[2026-01-11 13:28:52] 2026-01-11 12:28:14,375 | INFO     | --- collectZombieJob: --- 10, [1029785]
[2026-01-11 13:28:52] 2026-01-11 12:28:14,375 | INFO     | zombie collector waiting for pid 1029785
[2026-01-11 13:28:52] 2026-01-11 12:28:14,375 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 13:28:52] 2026-01-11 12:28:14,375 | INFO     | collected zombie processes
[2026-01-11 13:28:52] 2026-01-11 12:28:14,375 | INFO     | will attempt to kill all subprocesses of pid=1029785
[2026-01-11 13:28:52] 2026-01-11 12:28:14,466 | INFO     | process IDs to be killed: [1029785] (in reverse order)
[2026-01-11 13:28:52] 2026-01-11 12:28:14,510 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 13:28:52] 2026-01-11 12:28:14,510 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 13:28:52] 2026-01-11 12:28:14,513 | INFO     | did not find any defunct processes belonging to 1029785
[2026-01-11 13:28:52] 2026-01-11 12:28:14,516 | INFO     | did not find any defunct processes belonging to 1029785
[2026-01-11 13:28:52] 2026-01-11 12:28:14,517 | INFO     | ready for new job
[2026-01-11 13:28:52] 2026-01-11 12:28:14,517 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 13:28:52] 2026-01-11 12:28:14,517 | INFO     | ***************************************
[2026-01-11 13:28:52] 2026-01-11 12:28:14,517 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 13:28:52] 2026-01-11 12:28:14,517 | INFO     | ***************************************
[2026-01-11 13:28:52] 2026-01-11 12:28:14,517 | INFO     | 
[2026-01-11 13:28:52] 2026-01-11 12:28:14,518 | INFO     | architecture information:
[2026-01-11 13:28:52] 2026-01-11 12:28:14,518 | INFO     | executing command: cat /etc/os-release
[2026-01-11 13:28:52] 2026-01-11 12:28:14,529 | INFO     | cat /etc/os-release:
[2026-01-11 13:28:52] NAME="CentOS Linux"
[2026-01-11 13:28:52] VERSION="7 (Core)"
[2026-01-11 13:28:52] ID="centos"
[2026-01-11 13:28:52] ID_LIKE="rhel fedora"
[2026-01-11 13:28:52] VERSION_ID="7"
[2026-01-11 13:28:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 13:28:52] ANSI_COLOR="0;31"
[2026-01-11 13:28:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 13:28:52] HOME_URL="https://www.centos.org/"
[2026-01-11 13:28:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 13:28:52] 
[2026-01-11 13:28:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 13:28:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 13:28:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 13:28:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 13:28:52] 
[2026-01-11 13:28:52] 2026-01-11 12:28:14,530 | INFO     | ***************************************
[2026-01-11 13:28:52] 2026-01-11 12:28:15,032 | INFO     | executing command: df -mP /single_8TB/boinc-client/slots/9
[2026-01-11 13:28:52] 2026-01-11 12:28:15,043 | INFO     | sufficient remaining disk space (3331177054208 B)
[2026-01-11 13:28:52] 2026-01-11 12:28:15,044 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 13:28:52] 2026-01-11 12:28:15,044 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 13:28:52] 2026-01-11 12:28:15,044 | INFO     | update_server=False
[2026-01-11 13:28:52] 2026-01-11 12:28:15,044 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 13:28:52] 2026-01-11 12:28:15,044 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 13:28:52] 2026-01-11 12:28:15,063 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 13:28:52] 2026-01-11 12:28:15,063 | INFO     | aborting loop
[2026-01-11 13:28:52] 2026-01-11 12:28:15,093 | INFO     | all data control threads have been joined
[2026-01-11 13:28:52] 2026-01-11 12:28:15,841 | INFO     | all payload control threads have been joined
[2026-01-11 13:28:52] 2026-01-11 12:28:15,912 | INFO     | all job control threads have been joined
[2026-01-11 13:28:52] 2026-01-11 12:28:16,048 | INFO     | [job] retrieve thread has finished
[2026-01-11 13:28:52] 2026-01-11 12:28:16,068 | INFO     | [job] job monitor thread has finished
[2026-01-11 13:28:52] 2026-01-11 12:28:16,100 | INFO     | [data] control thread has finished
[2026-01-11 13:28:52] 2026-01-11 12:28:16,289 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 13:28:52] 2026-01-11 12:28:16,608 | INFO     | [data] copytool_in thread has finished
[2026-01-11 13:28:52] 2026-01-11 12:28:16,709 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 13:28:52] 2026-01-11 12:28:16,846 | INFO     | [payload] control thread has finished
[2026-01-11 13:28:52] 2026-01-11 12:28:16,865 | INFO     | [payload] failed_post thread has finished
[2026-01-11 13:28:52] 2026-01-11 12:28:16,917 | INFO     | [job] control thread has finished
[2026-01-11 13:28:52] 2026-01-11 12:28:17,048 | INFO     | [data] copytool_out thread has finished
[2026-01-11 13:28:52] 2026-01-11 12:28:17,179 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 13:28:52] 2026-01-11 12:28:17,330 | INFO     | [job] validate thread has finished
[2026-01-11 13:28:52] 2026-01-11 12:28:17,433 | INFO     | [payload] validate_post thread has finished
[2026-01-11 13:28:52] 2026-01-11 12:28:17,502 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 13:28:52] 2026-01-11 12:28:17,527 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 13:28:52] 2026-01-11 12:28:17,983 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 13:28:52] 2026-01-11 12:28:18,988 | INFO     | [job] queue monitor thread has finished
[2026-01-11 13:28:52] 2026-01-11 12:28:21,184 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 13:28:52] 2026-01-11 12:28:44,968 | INFO     | PID=1023106 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 13:28:52] 2026-01-11 12:28:44,968 | INFO     | .. there are 3 such processes running
[2026-01-11 13:28:52] 2026-01-11 12:28:44,968 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 13:28:52] 2026-01-11 12:28:44,968 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 13:28:52] 2026-01-11 12:28:44,968 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 13:28:52] 2026-01-11 12:28:45,604 | INFO     | [monitor] cgroup control has ended
[2026-01-11 13:28:52] 2026-01-11 12:28:46,990 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 134374988052288)>', '<ExcThread(monitor, started 134374578165504)>']
[2026-01-11 13:28:52] 2026-01-11 12:28:47,983 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 13:28:52] 2026-01-11 12:28:47,983 | INFO     | [monitor] control thread has ended
[2026-01-11 13:28:52] 2026-01-11 12:28:52,015 | INFO     | all workflow threads have been joined
[2026-01-11 13:28:52] 2026-01-11 12:28:52,015 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 13:28:52] 2026-01-11 12:28:52,015 | INFO     | traces error code: 0
[2026-01-11 13:28:52] 2026-01-11 12:28:52,015 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 13:28:52] 2026-01-11 12:28:52,067 [wrapper] ==== pilot stdout END ====
[2026-01-11 13:28:52] 2026-01-11 12:28:52,069 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 13:28:52] 2026-01-11 12:28:52,070 [wrapper] pilotpid: 1023106
[2026-01-11 13:28:52] 2026-01-11 12:28:52,072 [wrapper] Pilot exit status: 0
[2026-01-11 13:28:52] 2026-01-11 12:28:52,077 [wrapper] pandaids: 6965941357
[2026-01-11 13:28:52] 2026-01-11 12:28:52,106 [wrapper] cleanup supervisor_pilot 1133141 1023107
[2026-01-11 13:28:52] 2026-01-11 12:28:52,107 [wrapper] Test setup, not cleaning
[2026-01-11 13:28:52] 2026-01-11 12:28:52,108 [wrapper] apfmon messages muted
[2026-01-11 13:28:52] 2026-01-11 12:28:52,110 [wrapper] ==== wrapper stdout END ====
[2026-01-11 13:28:52] 2026-01-11 12:28:52,111 [wrapper] ==== wrapper stderr END ====
[2026-01-11 13:28:52]  *** Error codes and diagnostics ***
[2026-01-11 13:28:52]     "exeErrorCode": 0,
[2026-01-11 13:28:52]     "exeErrorDiag": "",
[2026-01-11 13:28:52]     "pilotErrorCode": 0,
[2026-01-11 13:28:52]     "pilotErrorDiag": "",
[2026-01-11 13:28:52]  *** Listing of results directory ***
[2026-01-11 13:28:52] total 1161384
[2026-01-11 13:28:52] -rw-r--r-- 1 boinc boinc    579449 Jan 11 04:29 pilot3.tar.gz
[2026-01-11 13:28:52] -rw-r--r-- 1 boinc boinc      5112 Jan 11 04:33 queuedata.json
[2026-01-11 13:28:52] -rwx------ 1 boinc boinc     36322 Jan 11 04:33 runpilot2-wrapper.sh
[2026-01-11 13:28:52] -rw-r--r-- 1 boinc boinc       100 Jan 11 11:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 13:28:52] -rw-r--r-- 1 boinc boinc       105 Jan 11 11:55 job.xml
[2026-01-11 13:28:52] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 11:55 run_atlas
[2026-01-11 13:28:52] -rw-r--r-- 2 boinc boinc 930022336 Jan 11 11:55 EVNT.48039248._000024.pool.root.1
[2026-01-11 13:28:52] drwxrwx--x 2 boinc boinc         5 Jan 11 11:55 shared
[2026-01-11 13:28:52] -rw-r--r-- 2 boinc boinc    592416 Jan 11 11:55 input.tar.gz
[2026-01-11 13:28:52] -rw-r--r-- 2 boinc boinc     15847 Jan 11 11:55 start_atlas.sh
[2026-01-11 13:28:52] -rw-r--r-- 1 boinc boinc         0 Jan 11 11:55 boinc_setup_complete
[2026-01-11 13:28:52] -rw-r--r-- 1 boinc boinc     10105 Jan 11 11:55 init_data.xml
[2026-01-11 13:28:52] -rw-r--r-- 1 boinc boinc         0 Jan 11 11:55 boinc_lockfile
[2026-01-11 13:28:52] -rw-r--r-- 1 boinc boinc      2591 Jan 11 11:55 pandaJob.out
[2026-01-11 13:28:52] -rw------- 1 boinc boinc    989548 Jan 11 11:55 agis_schedconf.cvmfs.json
[2026-01-11 13:28:52] -rw------- 1 boinc boinc   1516240 Jan 11 11:55 agis_ddmendpoints.agis.ALL.json
[2026-01-11 13:28:52] drwx------ 5 boinc boinc        22 Jan 11 11:55 pilot3
[2026-01-11 13:28:52] -rw------- 1 boinc boinc 253159493 Jan 11 13:27 HITS.48039250._006921.pool.root.1
[2026-01-11 13:28:52] -rw-r--r-- 1 boinc boinc       530 Jan 11 13:27 boinc_task_state.xml
[2026-01-11 13:28:52] -rw------- 1 boinc boinc      1036 Jan 11 13:28 memory_monitor_summary.json
[2026-01-11 13:28:52] -rw------- 1 boinc boinc    348829 Jan 11 13:28 log.48039250._006921.job.log.tgz.1
[2026-01-11 13:28:52] -rw------- 1 boinc boinc      7751 Jan 11 13:28 heartbeat.json
[2026-01-11 13:28:52] -rw-r--r-- 1 boinc boinc      8192 Jan 11 13:28 boinc_mmap_file
[2026-01-11 13:28:52] -rw-r--r-- 1 boinc boinc        27 Jan 11 13:28 wrapper_checkpoint.txt
[2026-01-11 13:28:52] -rw------- 1 boinc boinc        95 Jan 11 13:28 pilot_heartbeat.json
[2026-01-11 13:28:52] -rw------- 1 boinc boinc      4835 Jan 11 13:28 pilotlog.txt
[2026-01-11 13:28:52] -rw------- 1 boinc boinc    831948 Jan 11 13:28 log.48039250._006921.job.log.1
[2026-01-11 13:28:52] -rw------- 1 boinc boinc       357 Jan 11 13:28 output.list
[2026-01-11 13:28:52] -rw------- 1 boinc boinc   1198080 Jan 11 13:28 result.tar.gz
[2026-01-11 13:28:52] -rw-r--r-- 1 boinc boinc       620 Jan 11 13:28 runtime_log
[2026-01-11 13:28:52] -rw-r--r-- 1 boinc boinc      8939 Jan 11 13:28 runtime_log.err
[2026-01-11 13:28:52] -rw------- 1 boinc boinc       651 Jan 11 13:28 EZ0LDmMO1y8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpghKDmQehNom.diag
[2026-01-11 13:28:52] -rw-r--r-- 1 boinc boinc     21805 Jan 11 13:28 stderr.txt
[2026-01-11 13:28:52] HITS file was successfully produced:
[2026-01-11 13:28:52] -rw------- 1 boinc boinc 253159493 Jan 11 13:27 shared/HITS.pool.root.1
[2026-01-11 13:28:52]  *** Contents of shared directory: ***
[2026-01-11 13:28:52] total 1156944
[2026-01-11 13:28:52] -rw-r--r-- 2 boinc boinc 930022336 Jan 11 11:55 ATLAS.root_0
[2026-01-11 13:28:52] -rw-r--r-- 2 boinc boinc    592416 Jan 11 11:55 input.tar.gz
[2026-01-11 13:28:52] -rw-r--r-- 2 boinc boinc     15847 Jan 11 11:55 start_atlas.sh
[2026-01-11 13:28:52] -rw------- 1 boinc boinc 253159493 Jan 11 13:27 HITS.pool.root.1
[2026-01-11 13:28:52] -rw------- 1 boinc boinc   1198080 Jan 11 13:28 result.tar.gz
13:28:54 (1019266): run_atlas exited; CPU time 21587.242110
13:28:54 (1019266): called boinc_finish(0)

</stderr_txt>
]]>

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